Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 7.8e-103 377.1 186 100.0
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 7.8e-103 377.1 186 100.0
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 7.8e-103 377.1 186 100.0
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 4.7e-100 367.9 186 97.3
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 4.7e-100 367.9 186 97.3
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 4.7e-100 367.9 186 97.3
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 4.7e-100 367.9 186 97.3
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 1.8e-99 365.9 186 97.3
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 6.9e-99 364.0 186 96.8
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 6.9e-99 364.0 186 96.8
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 6.9e-99 364.0 186 96.8
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 3.4e-98 361.7 186 95.7
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 7.6e-98 360.5 186 96.2
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 7.6e-98 360.5 186 96.2
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 7.6e-98 360.5 186 96.2
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 9.9e-98 360.1 186 95.7
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 9.9e-98 360.1 186 95.7
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 9.9e-98 360.1 186 95.7
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 9.9e-98 360.1 184 96.2
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 1.3e-97 359.8 186 96.2
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 1.3e-97 359.8 186 96.2
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 3.2e-96 355.1 186 95.2
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 3.2e-96 355.1 184 95.7
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 7.8e-95 350.5 184 95.1
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.3e-94 349.7 187 94.1
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.3e-94 349.7 187 94.1
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 1.7e-94 349.4 184 94.0
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 3.9e-94 348.2 179 96.1
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 6.6e-94 347.4 189 92.6
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 3.3e-93 345.1 186 91.9
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 7.3e-93 344.0 183 91.8
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 1.8e-91 339.3 188 92.6
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 2.0e-90 335.9 186 91.9
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 2.9e-89 332.0 183 90.7
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 4.9e-89 331.3 186 89.8
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 4.9e-89 331.3 186 89.8
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 2.4e-88 328.9 188 89.9
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 4.2e-88 328.2 183 89.6
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 2.7e-87 325.5 185 89.7
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 7.9e-87 323.9 186 87.1
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 2.3e-86 322.4 188 89.9
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 2.3e-86 322.4 188 89.9
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 2.3e-86 322.4 188 89.9
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 2.3e-86 322.4 188 89.9
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 3.0e-86 322.0 188 87.8
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 3.0e-86 322.0 188 87.8
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 1.1e-85 320.1 186 87.6
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 2.5e-85 318.9 188 86.7
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 2.5e-85 318.9 188 86.7
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 4.0e-83 311.6 188 88.3
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 2.9e-81 305.4 191 84.3
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 2.7e-79 298.9 184 85.9
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 3.9e-78 295.0 159 93.1
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 1.1e-77 293.5 159 92.5
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 1.1e-75 287.0 182 81.9
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 1.1e-75 287.0 153 93.5
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 1.8e-75 286.2 173 87.3
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 5.3e-75 284.6 174 87.4
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 4.5e-74 281.6 173 86.1
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 1.7e-73 279.6 187 78.6
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 3.8e-73 278.5 188 80.3
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 8.4e-73 277.3 156 91.7
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 2.5e-72 275.8 161 90.7
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 1.9e-69 266.2 159 84.3
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.4e-67 260.0 188 76.1
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 5.9e-66 254.6 168 82.7
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 6.1e-63 244.6 147 85.0
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 5.5e-56 221.5 189 60.3
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 6.7e-54 214.5 134 79.1
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 5.7e-53 211.5 110 91.8
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 9.7e-53 210.7 150 75.3
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 4.8e-52 208.4 129 85.3
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 6.3e-52 208.0 133 83.5
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 2.0e-50 203.0 178 64.6
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 1.7e-49 199.9 181 63.0
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 3.6e-47 192.2 179 61.5
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 1.4e-46 190.3 181 59.7
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.4e-46 190.3 181 59.7
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 1.8e-46 189.9 115 86.1
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 3.9e-46 188.7 181 59.1
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 3.9e-46 188.7 181 59.1
ClCG06G009270 Citrullus lanatus HOM05D002864 ORTHO05D008485 1.7e-41 173.3 95 86.3
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 3.0e-38 162.5 109 78.9
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.5e-37 160.2 109 78.0
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.2e-34 150.6 174 55.7
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 1.6e-34 150.2 84 89.3
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 3.5e-34 149.1 85 87.1
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 1.7e-33 146.7 72 98.6
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 2.9e-33 146.0 72 97.2
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 8.5e-33 144.4 107 75.7
HanXRQChr13g0389471 Helianthus annuus HOM05D002864 ORTHO05D008485 4.2e-32 142.1 86 82.6
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 2.7e-31 139.4 77 89.6
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 6.1e-31 138.3 74 93.2
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 1.4e-30 137.1 68 97.1
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 1.4e-30 137.1 68 97.1
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.4e-30 137.1 108 70.4
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 8.8e-30 134.4 108 69.4
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 4.4e-29 132.1 74 86.5
CAN.G1542.4 Capsicum annuum HOM05D002864 ORTHO05D008485 3.1e-27 125.9 106 67.0
arahy.Tifrunner.gnm1.ann1.G1F49J Arachis hypogaea HOM05D002864 ORTHO05D008485 1.3e-25 120.6 66 86.4
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 9.5e-24 114.4 70 78.6
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 1.6e-23 113.6 184 37.5
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.1e-23 113.2 74 77.0
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.1e-23 113.2 69 79.7
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 1.4e-22 110.5 61 86.9
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 6.8e-22 108.2 69 75.4
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.4e-21 105.5 66 77.3
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 3.7e-20 102.4 71 74.6
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 6.3e-20 101.7 66 69.7
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.8e-19 100.1 55 85.5
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 9.5e-16 87.8 49 83.7
ClCG02G008120 Citrullus lanatus HOM05D002864 ORTHO05D008485 2.1e-15 86.7 53 81.1
Nitab4.5_0024895g0040 Nicotiana tabacum HOM05D002864 ORTHO05D008485 4.0e-14 82.4 53 81.1
Mapoly0023s0175 Marchantia polymorpha HOM05D002864 ORTHO05D008485 5.8e-13 78.6 62 66.1
MELO3C013035.2 Cucumis melo HOM05D002864 ORTHO05D008485 7.5e-13 78.2 68 60.3
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 1.3e-12 77.4 53 71.7
Solyc11g043190.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 4.6e-10 68.9 49 69.4
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 6.0e-10 68.6 36 88.9
CAN.G1439.9 Capsicum annuum HOM05D002864 ORTHO05D008485 2.3e-09 66.6 39 76.9
C09p10440 Brassica napus HOM05D002864 ORTHO05D008485 5.0e-09 65.5 34 88.2
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 8.6e-09 64.7 36 77.8
Rhsim05G0013600 Rhododendron simsii HOM05D007908 ORTHO05D009653 8.6e-09 64.7 42 78.6
MELO3C031088.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.2e-07 60.8 42 64.3
Nitab4.5_0000317g0150 Nicotiana tabacum HOM05D002578 ORTHO05D002698 1.6e-07 60.5 39 74.4
Psat1g132440 Pisum sativum HOM05D002864 ORTHO05D007972 2.8e-07 59.7 56 62.5
Solyc01g049950.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 3.6e-07 59.3 59 61.0
MELO3C030561.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.8e-06 57.0 40 72.5


User provided reference genes

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