Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 6.8e-204 713.8 359 100.0
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 1.8e-196 689.1 347 99.7
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 2.2e-194 682.2 350 98.6
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 1.6e-192 676.0 360 95.3
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 3.8e-186 654.8 347 94.2
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 1.6e-181 639.4 347 93.9
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 2.9e-178 628.6 350 92.3
arahy.Tifrunner.gnm1.ann1.PT41Y0 Arachis hypogaea HOM05D003517 ORTHO05D009798 3.8e-178 628.2 346 92.8
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 3.6e-173 611.7 347 90.8
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 2.6e-171 605.5 347 89.9
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.3e-165 586.6 342 88.6
A04p09560 Brassica napus HOM05D003517 ORTHO05D009798 3.4e-163 578.6 366 85.0
BolSC28t60322H Brassica oleracea HOM05D003517 ORTHO05D009798 3.4e-163 578.6 366 85.0
BraSC48t46302Z Brassica rapa HOM05D003517 ORTHO05D009798 3.4e-163 578.6 366 85.0
Thhalv10023100m.g Eutrema salsugineum HOM05D003517 ORTHO05D009798 4.5e-163 578.2 366 84.7
AT2G07734 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 4.9e-162 574.7 366 84.2
ATMG00290 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 4.9e-162 574.7 366 84.2
BraSC48t46288Z Brassica rapa HOM05D003517 ORTHO05D009798 2.7e-160 568.9 367 83.9
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 3.7e-157 558.5 364 81.9
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 6.7e-151 537.7 333 85.0
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 1.4e-145 520.0 278 93.9
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 1.4e-145 520.0 278 93.9
Ca_14831_v3 Cicer arietinum L. HOM05D003517 ORTHO05D009798 1.6e-144 516.5 322 84.2
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 6.1e-144 514.6 311 84.9
HanXRQChr16g0504301 Helianthus annuus HOM05D003517 ORTHO05D009798 1.2e-139 500.4 325 81.2
HanXRQMTg0579381 Helianthus annuus HOM05D003517 ORTHO05D009798 1.2e-139 500.4 325 81.2
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 4.2e-137 491.9 281 89.7
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 4.1e-132 475.3 278 86.0
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 3.0e-127 459.1 297 81.8
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 7.7e-123 444.5 255 88.6
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 1.8e-116 423.3 290 76.6
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 2.8e-109 399.4 235 88.9
Zm00001eb384400 Zea mays HOM05D003517 ORTHO05D009798 7.7e-107 391.3 261 79.7
TPR.G20538 Trifolium pratense HOM05D003517 ORTHO05D009798 1.0e-106 391.0 202 98.0
Eucgr.C02512 Eucalyptus grandis HOM05D003517 ORTHO05D009798 6.6e-106 388.3 227 87.7
Sp3g25550 Schrenkiella parvula HOM05D003517 ORTHO05D009798 1.1e-105 387.5 341 65.7
Lsat_1_v5_gn_7_67721 Lactuca sativa HOM05D003517 ORTHO05D009798 2.8e-104 382.9 256 78.9
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 5.2e-103 378.6 228 86.4
Hma1.2p1_0020F.1_g014210 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 3.7e-101 372.5 209 89.5
Hma1.2p1_0020F.1_g014220 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 3.5e-99 365.9 202 92.6
Gorai.001G161800 Gossypium raimondii HOM05D003517 ORTHO05D009798 2.2e-93 346.7 347 60.5
CAN.G1109.3 Capsicum annuum HOM05D003517 ORTHO05D009798 3.7e-93 345.9 201 88.6
Eucgr.H02717 Eucalyptus grandis HOM05D003517 ORTHO05D009798 3.2e-92 342.8 215 83.3
Lalb_Chr22g0353801 Lupinus albus HOM05D003517 ORTHO05D009798 4.6e-91 339.0 189 91.5
BolSC28t60424H Brassica oleracea HOM05D003517 ORTHO05D009798 6.0e-91 338.6 216 83.3
Zm00001eb438100 Zea mays HOM05D003517 ORTHO05D009798 8.3e-85 318.2 210 79.5
Zm00001eb438980 Zea mays HOM05D003517 ORTHO05D009798 8.3e-85 318.2 210 79.5
Zm00001eb439060 Zea mays HOM05D003517 ORTHO05D009798 8.3e-85 318.2 210 79.5
TPR.G36113 Trifolium pratense HOM05D003517 ORTHO05D009798 3.4e-78 296.2 146 99.3
EL10Ac7g18051 Beta vulgaris HOM05D003517 ORTHO05D009798 4.0e-71 272.7 227 64.8
PGSC0003DMG400033608 Solanum tuberosum HOM05D003517 ORTHO05D009798 1.0e-66 258.1 149 88.6
HanXRQChr10g0310901 Helianthus annuus HOM05D003517 ORTHO05D009798 8.7e-66 255.0 164 81.1
unitig_87.g28026 Utricularia gibba HOM05D003517 ORTHO05D009798 5.6e-65 252.3 199 69.8
Nitab4.5_0000172g1110 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.2e-61 240.4 173 74.0
SHI35305 Sapria himalayana HOM05D003517 ORTHO05D009798 2.4e-60 236.9 175 73.1
SEGI_36410 Sequoiadendron giganteum HOM05D003517 ORTHO05D009798 2.4e-60 236.9 263 55.1
Nitab4.5_0003945g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.7e-58 230.7 139 82.7
Nitab4.5_0000172g2130 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.3e-58 230.3 135 84.4
PSO585G0042 Papaver somniferum HOM05D003517 ORTHO05D009798 1.3e-56 224.6 253 54.2
PSO063G7170 Papaver somniferum HOM05D003517 ORTHO05D009798 1.6e-56 224.2 253 53.8
Zm00001eb438110 Zea mays HOM05D003517 ORTHO05D009798 6.4e-53 212.2 152 73.0
Zm00001eb438970 Zea mays HOM05D003517 ORTHO05D009798 6.4e-53 212.2 152 73.0
Zm00001eb439050 Zea mays HOM05D003517 ORTHO05D009798 6.4e-53 212.2 152 73.0
Zm00001eb440630 Zea mays HOM05D003517 ORTHO05D009798 6.4e-53 212.2 152 73.0
Solyc11g030940.3 Solanum lycopersicum HOM05D003517 ORTHO05D009798 4.2e-52 209.5 149 75.2
SGA_v2.0_scaffold648G53338 Striga asiatica HOM05D003517 ORTHO05D009798 1.2e-51 208.0 134 79.9
Nitab4.5_0003945g0070 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.5e-51 206.5 162 71.6
Oeu013683.1 Olea europaea HOM05D003517 ORTHO05D009798 5.1e-50 202.6 174 63.8
BraSC48t46337Z Brassica rapa HOM05D003517 ORTHO05D009798 1.1e-49 201.4 138 81.9
Nitab4.5_0001152g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.0e-46 190.7 134 73.9
Nitab4.5_0000172g2160 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.5e-43 179.9 127 72.4
TPR.G31549 Trifolium pratense HOM05D003517 ORTHO05D009798 1.5e-41 174.5 91 92.3
Nn1g09918 Nelumbo nucifera HOM05D003517 ORTHO05D009798 6.2e-40 169.1 88 93.2
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.0e-37 161.8 137 62.0
Gohir.A13G071500 Gossypium hirsutum HOM05D003517 ORTHO05D009798 5.5e-36 156.0 103 78.6
HanXRQChr10g0302361 Helianthus annuus HOM05D003517 ORTHO05D009798 1.6e-32 144.4 110 67.3
Solyc10g045740.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 8.2e-32 142.1 98 69.4
Nitab4.5_0001152g1080 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.5e-30 136.3 92 79.3
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.2e-29 134.0 110 66.4
Nitab4.5_0001152g0480 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.5e-28 130.6 184 46.7
CARHR287140 Cardamine hirsuta HOM05D003517 ORTHO05D009798 4.2e-28 129.8 80 83.8
BraSC159t45733Z Brassica rapa HOM05D003517 ORTHO05D009798 1.4e-23 114.8 83 74.7
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 2.6e-22 110.5 119 58.0
Solyc11g030935.1 Solanum lycopersicum HOM05D003517 ORTHO05D009798 2.6e-22 110.5 98 63.3
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.5e-20 102.8 58 84.5
Lalb_Chr22g0353791 Lupinus albus HOM05D003517 ORTHO05D009798 6.1e-19 99.4 58 84.5
Nitab4.5_0008059g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 7.9e-19 99.0 64 82.8
PSO339G1469 Papaver somniferum HOM05D003517 ORTHO05D009798 5.7e-17 92.8 95 53.7
PSO513G0171 Papaver somniferum HOM05D003517 ORTHO05D009798 1.3e-16 91.7 122 43.4
Dinv18903 Davidia involucrata HOM05D003517 ORTHO05D009798 1.8e-15 87.8 135 52.6
Nitab4.5_0001152g0970 Nicotiana tabacum HOM05D003517 ORTHO05D025894 9.1e-15 85.5 66 65.2
Nitab4.5_0000351g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009798 5.5e-12 76.3 62 62.9
Lj2g0009144 Lotus japonicus HOM05D000751 ORTHO05D000889 8.0e-11 72.4 37 94.6
Medtr0030s0090 Medicago truncatula HOM05D003517 ORTHO05D009798 1.5e-09 68.2 36 86.1
Nitab4.5_0010321g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.4e-09 66.6 47 83.0
Nitab4.5_0006196g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 8.2e-08 62.4 41 75.6
CSS0018598 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 5.3e-07 59.7 45 64.4


User provided reference genes

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