Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 1.4e-196 689.5 363 100.0
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 1.0e-186 656.8 377 92.3
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 4.4e-142 508.4 363 76.6
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 5.7e-142 508.1 360 75.6
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 2.3e-138 496.1 369 74.8
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 1.0e-135 487.3 360 74.4
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 4.0e-135 485.3 366 70.5
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 8.9e-135 484.2 364 72.8
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 3.5e-131 472.2 364 72.0
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 1.4e-124 450.3 365 66.8
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 6.0e-123 444.9 367 65.4
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 1.3e-122 443.7 367 67.0
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 2.3e-122 443.0 366 66.9
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 3.9e-122 442.2 386 63.7
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 8.6e-122 441.0 368 66.3
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 1.1e-121 440.7 366 65.8
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 3.3e-121 439.1 366 66.7
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 4.3e-121 438.7 366 67.2
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 9.5e-121 437.6 380 63.4
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 3.6e-120 435.6 383 65.0
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 1.1e-119 434.1 368 66.0
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.4e-119 433.7 364 66.8
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.3e-119 433.0 364 66.8
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 5.2e-119 431.8 365 65.2
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 6.8e-119 431.4 368 66.0
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 8.9e-119 431.0 365 65.5
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 8.9e-119 431.0 367 66.8
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.2e-118 430.6 366 65.6
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.2e-118 430.6 366 65.6
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 1.2e-118 430.6 362 65.7
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 2.0e-118 429.9 365 67.7
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 2.0e-118 429.9 366 66.1
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 3.4e-118 429.1 366 64.8
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 4.4e-118 428.7 367 65.1
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 9.9e-118 427.6 366 64.8
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 3.7e-117 425.6 364 62.6
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 4.9e-117 425.2 365 64.7
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 1.9e-116 423.3 361 64.5
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 2.4e-116 422.9 366 64.8
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 4.1e-116 422.2 374 63.6
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 4.1e-116 422.2 363 63.6
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 5.4e-116 421.8 368 65.5
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 7.1e-116 421.4 366 62.8
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 9.2e-116 421.0 368 64.4
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.6e-115 420.2 379 63.1
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 1.6e-115 420.2 358 64.2
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 2.1e-115 419.9 371 64.4
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 2.7e-115 419.5 370 63.8
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 6.0e-115 418.3 366 62.6
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 7.8e-115 417.9 379 63.1
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 1.7e-114 416.8 365 65.2
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 1.7e-114 416.8 364 63.7
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 2.3e-114 416.4 368 64.7
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 2.3e-114 416.4 364 62.1
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 2.3e-114 416.4 365 62.7
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 3.0e-114 416.0 359 63.8
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 3.0e-114 416.0 364 63.7
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.5e-113 413.7 364 63.7
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 1.9e-113 413.3 363 62.5
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 2.5e-113 412.9 368 62.8
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 5.6e-113 411.8 366 62.8
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 7.3e-113 411.4 369 64.8
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 1.2e-112 410.6 367 63.8
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 1.2e-112 410.6 371 61.5
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 1.1e-111 407.5 362 62.4
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 1.8e-111 406.8 366 63.7
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 2.0e-110 403.3 366 62.0
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 2.0e-110 403.3 364 60.7
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 6.4e-109 398.3 362 60.2
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.4e-108 396.4 364 60.7
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 7.8e-107 391.3 399 57.1
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 1.0e-106 391.0 381 58.5
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 1.3e-106 390.6 381 58.5
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.3e-106 390.6 366 61.5
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.7e-106 390.2 357 60.5
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.6e-104 383.6 342 64.3
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 2.1e-104 383.3 431 52.9
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.4e-103 380.6 375 58.9
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 1.8e-103 380.2 360 59.7
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 5.8e-102 375.2 366 57.9
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 2.9e-101 372.9 368 57.6
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 6.4e-101 371.7 372 58.3
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 6.4e-101 371.7 369 58.3
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 1.4e-100 370.5 362 58.6
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 2.4e-100 369.8 368 58.4
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 1.6e-99 367.1 364 58.0
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 2.7e-99 366.3 437 52.2
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 1.7e-98 363.6 388 54.6
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 1.1e-97 360.9 381 56.4
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.9e-97 360.1 353 58.4
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 5.6e-97 358.6 367 56.1
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 2.8e-96 356.3 361 59.0
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 2.6e-94 349.7 386 54.4
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 1.7e-93 347.1 367 52.0
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 2.9e-93 346.3 384 55.2
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 6.4e-93 345.1 362 55.8
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.1e-92 344.4 358 55.9
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 1.1e-92 344.4 395 53.2
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.4e-92 344.0 358 55.9
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 1.6e-91 340.5 386 53.4
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 1.6e-91 340.5 386 53.4
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 6.7e-90 335.1 386 54.1
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 9.6e-89 331.3 345 54.8
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.8e-88 329.7 371 53.9
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 8.4e-85 318.2 301 61.8
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 3.5e-83 312.8 386 50.5
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 3.9e-82 309.3 385 49.9
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 8.7e-82 308.1 385 50.4
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 1.1e-81 307.8 385 50.1
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 1.1e-81 307.8 385 50.1
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 3.7e-80 302.8 380 49.7
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 3.7e-80 302.8 385 49.9
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.1e-79 301.2 359 50.4
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 4.9e-77 292.4 361 50.1
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 6.9e-71 271.9 311 52.7
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 1.2e-70 271.2 385 42.1
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 3.2e-68 263.1 235 63.0
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 1.2e-67 261.2 221 64.3
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 2.0e-65 253.8 365 46.0
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.6e-62 243.4 189 68.3
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 3.4e-62 243.0 348 43.1
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 9.4e-60 235.0 438 37.9
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 7.4e-49 198.7 261 47.9
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 5.9e-46 189.1 209 54.5
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 1.5e-44 184.5 360 37.2
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 7.2e-36 155.6 119 67.2
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.0e-34 151.8 161 56.5
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 5.7e-33 146.0 124 62.9
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 8.9e-18 95.5 443 24.6
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 3.4e-17 93.6 397 26.2
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 2.2e-16 90.9 56 82.1
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.2e-16 90.9 121 46.3
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 3.5e-14 83.6 63 63.5
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 3.0e-13 80.5 56 73.2
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 2.5e-12 77.4 117 43.6
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 4.7e-11 73.2 61 68.9
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 1.1e-10 72.0 61 68.9
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 1.4e-10 71.6 513 23.6
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 6.8e-10 69.3 58 65.5
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 6.8e-10 69.3 60 66.7
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 1.1e-07 62.0 50 60.0


User provided reference genes

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