Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00318g0003846 Lotus japonicus HOM05D008622 ORTHO05D010757 7.6e-39 163.3 80 100.0
CAN.G612.10 Capsicum annuum HOM05D008622 ORTHO05D010757 1.8e-32 142.1 79 86.1
C06p21400 Brassica napus HOM05D008622 ORTHO05D010757 5.3e-32 140.6 79 83.5
BolSC37t60776H Brassica oleracea HOM05D008622 ORTHO05D010757 5.3e-32 140.6 79 83.5
BolSC45t60930H Brassica oleracea HOM05D008622 ORTHO05D010757 5.3e-32 140.6 79 83.5
BraSC25t45888Z Brassica rapa HOM05D008622 ORTHO05D010757 5.3e-32 140.6 79 83.5
BraSC59t46518Z Brassica rapa HOM05D008622 ORTHO05D010757 5.3e-32 140.6 79 83.5
Sed0001678 Sechium edule HOM05D008622 ORTHO05D010757 2.0e-31 138.7 79 82.3
Sed0011032 Sechium edule HOM05D008622 ORTHO05D010757 2.0e-31 138.7 79 82.3
Sed0018360 Sechium edule HOM05D008622 ORTHO05D010757 2.0e-31 138.7 79 82.3
CAN.G877.8 Capsicum annuum HOM05D008622 ORTHO05D010757 1.7e-30 135.6 79 83.5
Nn020s41492 Nelumbo nucifera HOM05D008622 ORTHO05D010757 1.7e-30 135.6 80 83.8
PSO548G0027 Papaver somniferum HOM05D008622 ORTHO05D010757 8.5e-30 133.3 80 82.5
PGR111G0016 Punica granatum HOM05D008622 ORTHO05D010757 5.5e-29 130.6 79 84.8
DCAR_032466 Daucus carota HOM05D008622 ORTHO05D010757 4.6e-28 127.5 77 81.8
Gohir.1Z050166 Gossypium hirsutum HOM05D008622 ORTHO05D010757 8.8e-27 123.2 79 78.5
ATCG00050 Arabidopsis thaliana HOM05D008622 ORTHO05D010757 1.3e-25 119.4 79 74.7
Thhalv10001859m.g Eutrema salsugineum HOM05D008622 ORTHO05D010757 1.4e-24 115.9 63 87.3
Peaxi162Scf00110g00044 Petunia axillaris HOM05D008622 ORTHO05D010757 1.4e-24 115.9 65 84.6
Glyma.15G248550 Glycine max HOM05D008622 ORTHO05D010757 2.4e-24 115.2 60 95.0
Glyma.16G088900 Glycine max HOM05D008622 ORTHO05D010757 3.1e-24 114.8 65 81.5
LjContig00489g0025793 Lotus japonicus HOM05D008622 ORTHO05D010757 5.3e-24 114.0 61 86.9
CARHR281850 Cardamine hirsuta HOM05D008622 ORTHO05D010757 6.9e-24 113.6 68 77.9
HanXRQChr00c0496g0575161 Helianthus annuus HOM05D008622 ORTHO05D010757 2.0e-23 112.1 61 86.9
MELO3C028501.2 Cucumis melo HOM05D008622 ORTHO05D010757 2.6e-23 111.7 63 82.5
BolSC44t60843H Brassica oleracea HOM05D008622 ORTHO05D010757 3.4e-23 111.3 75 69.3
BolSC45t60884H Brassica oleracea HOM05D008622 ORTHO05D010757 3.4e-23 111.3 75 69.3
BolSC46t60979H Brassica oleracea HOM05D008622 ORTHO05D010757 3.4e-23 111.3 75 69.3
BolSC49t61205H Brassica oleracea HOM05D008622 ORTHO05D010757 5.9e-23 110.5 59 86.4
Thhalv10028241m.g Eutrema salsugineum HOM05D008622 ORTHO05D010757 1.0e-22 109.8 65 80.0
BolSC29t60522H Brassica oleracea HOM05D008622 ORTHO05D010757 2.2e-22 108.6 60 83.3
CiPaw.06G085000 Carya illinoinensis HOM05D008622 ORTHO05D010757 4.2e-21 104.4 60 83.3
Gohir.A12G078500 Gossypium hirsutum HOM05D008622 ORTHO05D010757 1.4e-19 99.4 59 78.0
Gorai.012G044100 Gossypium raimondii HOM05D008622 ORTHO05D010757 3.0e-19 98.2 58 79.3
Gohir.D08G095680 Gossypium hirsutum HOM05D008622 ORTHO05D010757 1.5e-18 95.9 79 63.3
Migut.H01168 Erythranthe guttata HOM05D008622 ORTHO05D010757 7.4e-18 93.6 57 73.7
Gorai.001G180700 Gossypium raimondii HOM05D008622 ORTHO05D010757 4.8e-17 90.9 52 78.8
Gorai.003G055400 Gossypium raimondii HOM05D008622 ORTHO05D010757 2.6e-15 85.1 46 87.0
Gohir.D06G105260 Gossypium hirsutum HOM05D008622 ORTHO05D010757 3.5e-15 84.7 52 73.1
CiPaw.01G059700 Carya illinoinensis HOM05D008622 ORTHO05D010757 1.5e-13 79.3 56 67.9
Sed0025419 Sechium edule HOM05D008622 ORTHO05D010757 1.9e-13 79.0 74 55.4
MCO08G152 Micromonas commoda HOM05D003175 ORTHO05D010757 7.2e-13 77.0 74 50.0
Nitab4.5_0016174g0030 Nicotiana tabacum HOM05D001325 ORTHO05D001540 2.1e-12 75.5 57 66.7
Cre12.g494450 Chlamydomonas reinhardtii HOM05D003175 ORTHO05D010757 8.0e-12 73.6 73 49.3
ClCG00G002380 Citrullus lanatus HOM05D008622 ORTHO05D010757 5.7e-10 67.4 36 83.3
Solyc02g011995.1 Solanum lycopersicum HOM05D008622 ORTHO05D010757 7.5e-10 67.0 43 69.8
BcaNung04917 Brassica carinata HOM05D003175 ORTHO05D003591 8.2e-09 63.5 79 43.0
BcaNung04920 Brassica carinata HOM05D003175 ORTHO05D003591 8.2e-09 63.5 79 43.0
Carub.0007s0566 Capsella rubella HOM05D003175 ORTHO05D003591 8.2e-09 63.5 79 43.0
AL7G16580 Arabidopsis lyrata HOM05D003175 ORTHO05D003591 1.1e-08 63.2 79 43.0
BcaNung00682 Brassica carinata HOM05D003175 ORTHO05D003591 1.1e-08 63.2 79 43.0
A01p03870 Brassica napus HOM05D003175 ORTHO05D003591 1.1e-08 63.2 79 43.0
C01p04180 Brassica napus HOM05D003175 ORTHO05D003591 1.1e-08 63.2 79 43.0
BolC1t00406H Brassica oleracea HOM05D003175 ORTHO05D003591 1.1e-08 63.2 79 43.0
BraA01t00374Z Brassica rapa HOM05D003175 ORTHO05D003591 1.1e-08 63.2 79 43.0
Nitab4.5_0004864g0050 Nicotiana tabacum HOM05D000540 ORTHO05D000681 1.8e-08 62.4 37 78.4
Aa31LG2G15900 Aethionema arabicum HOM05D003175 ORTHO05D003591 3.1e-08 61.6 80 42.5
AT4G34620 Arabidopsis thaliana HOM05D003175 ORTHO05D003591 3.1e-08 61.6 79 41.8
Potri.013G128200 Populus trichocarpa HOM05D003175 ORTHO05D003591 5.3e-08 60.8 79 43.0
Sabra13G0107100 Salix brachista HOM05D003175 ORTHO05D003591 5.3e-08 60.8 79 43.0
Manes.05G131300 Manihot esculenta HOM05D003175 ORTHO05D003591 9.1e-08 60.1 79 40.5
BraSC58t46475Z Brassica rapa HOM05D008622 ORTHO05D010757 1.2e-07 59.7 50 54.0
Thhalv10026606m.g Eutrema salsugineum HOM05D003175 ORTHO05D003591 1.2e-07 59.7 80 40.0
Sp7g32410 Schrenkiella parvula HOM05D003175 ORTHO05D003591 1.2e-07 59.7 79 40.5
PGR102G2971 Punica granatum HOM05D003175 ORTHO05D003591 2.7e-07 58.5 81 40.7
Pp3c11_14140 Physcomitrium patens HOM05D003175 ORTHO05D003591 3.5e-07 58.2 79 41.8
Nn7g37004 Nelumbo nucifera HOM05D003175 ORTHO05D003591 7.7e-07 57.0 80 42.5
Sed0010998 Sechium edule HOM05D003175 ORTHO05D003591 7.7e-07 57.0 80 38.8
SEGI_09210 Sequoiadendron giganteum HOM05D003175 ORTHO05D003591 7.7e-07 57.0 83 37.3
GSVIVG01015186001 Vitis vinifera HOM05D003175 ORTHO05D003591 7.7e-07 57.0 80 40.0
Sed0014824 Sechium edule HOM05D003175 ORTHO05D003591 1.0e-06 56.6 80 40.0
TWI09G0130 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 1.0e-06 56.6 80 40.0
Ciclev10013100m.g Citrus clementina HOM05D003175 ORTHO05D003591 1.3e-06 56.2 80 40.0
COL.COLO4_18186 Corchorus olitorius HOM05D003175 ORTHO05D003591 1.3e-06 56.2 80 40.0
MBI16_g10338_MAGBIO Magnolia biondii HOM05D003175 ORTHO05D003591 1.3e-06 56.2 80 40.0
Manes.01G198600 Manihot esculenta HOM05D003175 ORTHO05D003591 1.3e-06 56.2 80 40.0
Atru.chr8.2333 Acer truncatum HOM05D003175 ORTHO05D003591 1.7e-06 55.8 80 40.0
FvH4_1g07750 Fragaria vesca HOM05D003175 ORTHO05D003591 1.7e-06 55.8 80 40.0
FAN19G2985 Fragaria x ananassa HOM05D003175 ORTHO05D003591 1.7e-06 55.8 80 40.0
Lalb_Chr07g0180911 Lupinus albus HOM05D003175 ORTHO05D003591 1.7e-06 55.8 83 34.9
MD02G1081900 Malus domestica HOM05D003175 ORTHO05D003591 1.7e-06 55.8 80 40.0
PSO170G4980 Papaver somniferum HOM05D003175 ORTHO05D003591 1.7e-06 55.8 80 40.0
PSO384G0167 Papaver somniferum HOM05D003175 ORTHO05D003591 1.7e-06 55.8 80 40.0
Peaxi162Scf01604g00008 Petunia axillaris HOM05D003175 ORTHO05D003591 1.7e-06 55.8 80 40.0
Prupe.7G207200 Prunus persica HOM05D003175 ORTHO05D003591 1.7e-06 55.8 80 40.0
RcHm_v2.0_Chr2g0093641 Rosa chinensis HOM05D003175 ORTHO05D003591 1.7e-06 55.8 80 40.0
SMO119G0404 Selaginella moellendorffii HOM05D003175 ORTHO05D003591 1.7e-06 55.8 82 41.5
Solyc07g008660.3 Solanum lycopersicum HOM05D003175 ORTHO05D003591 1.7e-06 55.8 80 40.0
Sopen07g004590 Solanum pennellii HOM05D003175 ORTHO05D003591 1.7e-06 55.8 80 40.0
QL01p015391 Quercus lobata HOM05D003175 ORTHO05D003591 2.2e-06 55.5 79 40.5
QL02p062322 Quercus lobata HOM05D003175 ORTHO05D003591 2.2e-06 55.5 80 38.8
SGA_v2.0_scaffold40G15473 Striga asiatica HOM05D003175 ORTHO05D003591 2.2e-06 55.5 80 38.8
AUR62003470 Chenopodium quinoa HOM05D003175 ORTHO05D003591 2.9e-06 55.1 78 37.2
ClCG03G015450 Citrullus lanatus HOM05D003175 ORTHO05D003591 2.9e-06 55.1 80 40.0
FAN26G0002 Fragaria x ananassa HOM05D003175 ORTHO05D003591 2.9e-06 55.1 80 38.8
FAN26G2348 Fragaria x ananassa HOM05D003175 ORTHO05D003591 2.9e-06 55.1 80 38.8
FAN28G0810 Fragaria x ananassa HOM05D003175 ORTHO05D003591 2.9e-06 55.1 80 38.8
MD15G1209200 Malus domestica HOM05D003175 ORTHO05D003591 2.9e-06 55.1 80 38.8
Pp3c2_38140 Physcomitrium patens HOM05D003175 ORTHO05D003591 2.9e-06 55.1 80 41.2
TAR629G2636 Trochodendron aralioides HOM05D003175 ORTHO05D003591 2.9e-06 55.1 80 40.0
HPP92_004704 Vanilla planifolia HOM05D003175 ORTHO05D003591 2.9e-06 55.1 79 40.5
Actinidia38453 Actinidia chinensis HOM05D003175 ORTHO05D003591 3.8e-06 54.7 80 38.8
ATR0626G012 Amborella trichopoda HOM05D003175 ORTHO05D003591 3.8e-06 54.7 80 40.0
CiPaw.08G005200 Carya illinoinensis HOM05D003175 ORTHO05D003591 3.8e-06 54.7 80 38.8
CsaV3_1G040590 Cucumis sativus L. HOM05D003175 ORTHO05D003591 3.8e-06 54.7 80 38.8
Migut.J00455 Erythranthe guttata HOM05D003175 ORTHO05D003591 3.8e-06 54.7 80 37.5
Lalb_Chr08g0232311 Lupinus albus HOM05D003175 ORTHO05D003591 3.8e-06 54.7 80 38.8
Nitab4.5_0001519g0020 Nicotiana tabacum HOM05D003175 ORTHO05D003591 3.8e-06 54.7 80 38.8
Nitab4.5_0004056g0030 Nicotiana tabacum HOM05D003175 ORTHO05D003591 3.8e-06 54.7 80 38.8
Ah.03g147100 Amaranthus hybridus HOM05D003175 ORTHO05D003591 5.0e-06 54.3 80 38.8
Ah.14g083830 Amaranthus hybridus HOM05D003175 ORTHO05D003591 5.0e-06 54.3 80 38.8
Aqoxy7G02783 Aquilegia oxysepala HOM05D003175 ORTHO05D003591 5.0e-06 54.3 80 40.0
arahy.Tifrunner.gnm1.ann1.24WPAI Arachis hypogaea HOM05D003175 ORTHO05D003591 5.0e-06 54.3 80 37.5
arahy.Tifrunner.gnm1.ann1.TVN50Z Arachis hypogaea HOM05D003175 ORTHO05D003591 5.0e-06 54.3 80 37.5
Glyma.09G064500 Glycine max HOM05D003175 ORTHO05D003591 5.0e-06 54.3 80 37.5
Glyma.15G170800 Glycine max HOM05D003175 ORTHO05D003591 5.0e-06 54.3 80 37.5
HanXRQChr10g0319441 Helianthus annuus HOM05D003175 ORTHO05D003591 5.0e-06 54.3 80 37.5
Medtr2g039750 Medicago truncatula HOM05D003175 ORTHO05D003591 5.0e-06 54.3 80 36.2
Nitab4.5_0001586g0160 Nicotiana tabacum HOM05D003175 ORTHO05D003591 5.0e-06 54.3 80 38.8
Nitab4.5_0002593g0030 Nicotiana tabacum HOM05D003175 ORTHO05D003591 5.0e-06 54.3 80 38.8
PSO063G1429 Papaver somniferum HOM05D003175 ORTHO05D003591 5.0e-06 54.3 80 41.2
Phvul.009G231300 Phaseolus vulgaris HOM05D003175 ORTHO05D003591 5.0e-06 54.3 80 37.5
THA.LOC104804346 Tarenaya hassleriana HOM05D003175 ORTHO05D003591 5.0e-06 54.3 79 38.0
TPR.G13431 Trifolium pratense HOM05D003175 ORTHO05D003591 5.0e-06 54.3 80 36.2
Actinidia29908 Actinidia chinensis HOM05D003175 ORTHO05D003591 6.5e-06 53.9 80 37.5
Cpa.g.sc128.7 Carica papaya HOM05D003175 ORTHO05D003591 6.5e-06 53.9 80 37.5
AUR62017777 Chenopodium quinoa HOM05D003175 ORTHO05D003591 6.5e-06 53.9 80 36.2
MELO3C015489.2 Cucumis melo HOM05D003175 ORTHO05D003591 6.5e-06 53.9 80 37.5
Duzib168G1627 Durio zibethinus HOM05D003175 ORTHO05D003591 6.5e-06 53.9 80 38.8
FAN23G2612 Fragaria x ananassa HOM05D003175 ORTHO05D003591 6.5e-06 53.9 80 37.5
Gohir.A10G064800 Gossypium hirsutum HOM05D003175 ORTHO05D003591 6.5e-06 53.9 80 38.8
Gohir.D05G031900 Gossypium hirsutum HOM05D003175 ORTHO05D003591 6.5e-06 53.9 80 38.8
Gohir.D10G066300 Gossypium hirsutum HOM05D003175 ORTHO05D003591 6.5e-06 53.9 80 38.8
Gorai.009G032100 Gossypium raimondii HOM05D003175 ORTHO05D003591 6.5e-06 53.9 80 38.8
Gorai.011G070400 Gossypium raimondii HOM05D003175 ORTHO05D003591 6.5e-06 53.9 80 38.8
Mapoly0011s0195 Marchantia polymorpha HOM05D003175 ORTHO05D003591 6.5e-06 53.9 79 41.8
PSO063G6037 Papaver somniferum HOM05D003175 ORTHO05D003591 6.5e-06 53.9 80 40.0
PSO384G0269 Papaver somniferum HOM05D003175 ORTHO05D003591 6.5e-06 53.9 80 38.8
PSO384G5082 Papaver somniferum HOM05D003175 ORTHO05D003591 6.5e-06 53.9 80 38.8
Potri.004G217400 Populus trichocarpa HOM05D003175 ORTHO05D003591 6.5e-06 53.9 80 38.8
Sabra04G0148100 Salix brachista HOM05D003175 ORTHO05D003591 6.5e-06 53.9 80 38.8
Thecc.09G086900 Theobroma cacao HOM05D003175 ORTHO05D003591 6.5e-06 53.9 80 38.8
TWI53G2020 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 6.5e-06 53.9 79 36.7
CANSAT11G2123 Cannabis sativa HOM05D003175 ORTHO05D003591 8.5e-06 53.5 80 37.5
CDE02G0210 Ceratophyllum demersum HOM05D003175 ORTHO05D003591 8.5e-06 53.5 80 38.8
Dinv42332 Davidia involucrata HOM05D003175 ORTHO05D003591 8.5e-06 53.5 80 37.5
Duzib150G0820 Durio zibethinus HOM05D003175 ORTHO05D003591 8.5e-06 53.5 80 38.8
ECA234G4558 Erigeron canadensis HOM05D003175 ORTHO05D003591 8.5e-06 53.5 80 37.5
Eucgr.C03471 Eucalyptus grandis HOM05D003175 ORTHO05D003591 8.5e-06 53.5 80 38.8
Eucgr.C03473 Eucalyptus grandis HOM05D003175 ORTHO05D003591 8.5e-06 53.5 80 38.8
Hma1.2p1_1838F.1_g304840 Hydrangea macrophylla HOM05D003175 ORTHO05D003591 8.5e-06 53.5 80 37.5
Lj6g0021196 Lotus japonicus HOM05D003175 ORTHO05D003591 8.5e-06 53.5 80 38.8
Pp3c1_7830 Physcomitrium patens HOM05D003175 ORTHO05D003591 8.5e-06 53.5 79 40.5
Sc18g0002200 Simmondsia chinensis HOM05D003175 ORTHO05D003591 8.5e-06 53.5 80 37.5


User provided reference genes

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