Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 5.4e-150 534.3 262 100.0
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 7.3e-123 444.1 307 75.9
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 7.3e-123 444.1 307 75.9
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 7.3e-123 444.1 307 75.9
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 3.6e-122 441.8 307 75.6
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 3.6e-122 441.8 307 75.6
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 3.6e-122 441.8 306 75.8
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 3.6e-122 441.8 307 75.6
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 6.2e-122 441.0 307 75.6
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 3.1e-121 438.7 307 75.2
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 9.0e-121 437.2 307 75.2
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 1.5e-120 436.4 307 74.9
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 1.5e-120 436.4 307 74.9
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 1.5e-120 436.4 307 74.9
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 5.8e-120 434.5 306 74.8
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 1.4e-118 429.9 307 73.9
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 7.9e-117 424.1 307 73.6
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 1.0e-116 423.7 307 73.3
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.0e-116 422.2 302 72.2
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 3.9e-116 421.8 307 73.3
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 3.9e-116 421.8 307 73.3
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 3.9e-116 421.8 307 73.3
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 3.9e-116 421.8 307 73.3
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 3.9e-116 421.8 307 73.3
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 3.9e-116 421.8 307 73.3
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 3.9e-116 421.8 307 73.3
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 3.9e-116 421.8 307 73.3
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 7.4e-115 417.5 307 72.3
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 2.1e-114 416.0 283 77.0
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 9.6e-107 390.6 263 77.6
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 5.8e-104 381.3 278 73.0
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 1.0e-103 380.6 278 73.0
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.1e-102 377.1 278 72.7
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.1e-102 377.1 278 72.7
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.1e-102 377.1 278 72.7
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 1.6e-101 373.2 247 79.4
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 1.8e-100 369.8 285 71.9
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 1.9e-99 366.3 278 71.2
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.8e-98 362.5 278 70.9
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 3.4e-96 355.5 268 71.3
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 9.4e-94 347.4 326 60.4
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.5e-91 340.1 269 70.3
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 3.2e-86 322.4 236 74.2
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 1.1e-83 313.9 242 69.0
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 5.5e-78 295.0 236 68.2
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 5.5e-78 295.0 236 68.2
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 4.7e-77 292.0 234 67.9
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 2.6e-75 286.2 215 72.6
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 4.4e-75 285.4 254 64.6
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 1.7e-74 283.5 137 100.0
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 4.8e-74 282.0 231 66.7
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 2.4e-73 279.6 235 65.1
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 9.1e-73 277.7 227 67.0
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 5.9e-72 275.0 137 97.8
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 2.9e-71 272.7 137 97.1
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.9e-70 270.0 234 64.1
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.2e-70 269.2 262 59.2
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.0e-68 264.2 236 62.3
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 2.0e-67 260.0 222 65.3
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 6.5e-63 245.0 235 60.4
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 4.4e-59 232.3 112 98.2
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 1.3e-58 230.7 374 42.5
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 3.0e-52 209.5 127 82.7
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 1.7e-50 203.8 215 54.9
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.1e-49 199.1 105 90.5
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.1e-49 199.1 105 90.5
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 5.4e-49 198.7 100 97.0
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.3e-47 194.1 105 89.5
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 2.3e-47 193.4 159 68.6
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 6.6e-47 191.8 105 90.5
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 1.9e-46 190.3 97 93.8
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 5.6e-46 188.7 105 90.5
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 7.3e-46 188.3 97 90.7
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 2.8e-45 186.4 97 93.8
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 4.0e-44 182.6 234 51.3
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 6.8e-44 181.8 193 57.5
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 1.2e-43 181.0 271 40.2
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 2.6e-43 179.9 97 91.8
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 1.7e-42 177.2 223 51.6
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.7e-39 167.2 104 78.8
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 1.1e-38 164.5 81 95.1
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 3.3e-38 162.9 303 38.6
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.4e-35 152.9 224 46.0
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 7.5e-35 151.8 124 65.3
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 3.7e-34 149.4 105 74.3
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 6.4e-34 148.7 105 74.3
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 4.3e-30 136.0 70 94.3
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.6e-29 132.9 159 49.1
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 8.1e-29 131.7 66 95.5
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 1.4e-28 131.0 177 48.0
Lalb_Chr00c21g0405811 Lupinus albus HOM05D004537 ORTHO05D005492 8.3e-26 121.7 56 100.0
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.3e-23 113.6 67 88.1
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.3e-23 113.6 67 88.1
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 4.7e-21 105.9 164 44.5
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 1.1e-20 104.8 65 80.0
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 1.1e-20 104.8 72 70.8
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 1.8e-20 104.0 101 49.5
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.8e-20 104.0 66 77.3
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 2.0e-19 100.5 62 83.9
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 2.0e-19 100.5 62 83.9
C04p32420 Brassica napus HOM05D004537 ORTHO05D005492 1.7e-18 97.4 70 74.3
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 4.9e-18 95.9 52 84.6
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 4.9e-18 95.9 59 79.7
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 4.2e-17 92.8 56 82.1
EL10Ac5g12760 Beta vulgaris HOM05D004537 ORTHO05D005492 9.3e-17 91.7 46 91.3
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 1.0e-15 88.2 54 81.5
TPR.G39033 Trifolium pratense HOM05D004537 ORTHO05D005492 2.3e-15 87.0 50 84.0
Nitab4.5_0001127g0350 Nicotiana tabacum HOM05D004537 ORTHO05D005492 8.7e-15 85.1 42 92.9
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 2.5e-14 83.6 54 77.8
Nitab4.5_0002322g0200 Nicotiana tabacum HOM05D004537 ORTHO05D015169 7.3e-14 82.0 41 95.1
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 2.1e-13 80.5 95 54.7
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 4.8e-13 79.3 48 83.3
ATR1125G006 Amborella trichopoda HOM05D004537 ORTHO05D005492 1.2e-11 74.7 33 97.0
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.5e-11 74.3 101 44.6
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 7.6e-11 72.0 42 83.3
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 6.4e-10 68.9 34 94.1
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.4e-10 68.9 36 88.9
BolC4t24790H Brassica oleracea HOM05D004537 ORTHO05D005492 8.4e-10 68.6 35 88.6
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 4.2e-09 66.2 38 81.6
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 1.3e-07 61.2 32 84.4
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 2.3e-07 60.5 39 71.8
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 8.7e-07 58.5 36 83.3
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.3e-06 56.2 33 87.9
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 4.3e-06 56.2 33 87.9
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 4.3e-06 56.2 33 87.9
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 5.6e-06 55.8 51 62.7
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 7.3e-06 55.5 66 50.0


User provided reference genes

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