Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 5.2e-309 1063.5 528 100.0
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 1.3e-307 1058.9 528 99.4
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 1.3e-307 1058.9 528 99.4
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 1.6e-305 1052.0 528 98.9
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 2.6e-300 1034.6 527 97.9
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 8.2e-299 1029.6 527 97.5
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 2.4e-298 1028.1 525 97.3
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 7.2e-295 1016.5 528 96.4
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 1.8e-293 1011.9 528 96.0
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 1.8e-293 1011.9 528 96.0
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 1.8e-293 1011.9 528 96.0
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 1.8e-293 1011.9 526 96.2
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 1.2e-292 1009.2 528 95.6
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 9.5e-287 989.6 528 94.7
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 9.5e-287 989.6 528 94.7
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 9.5e-287 989.6 528 94.7
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 9.5e-287 989.6 528 94.7
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 9.5e-287 989.6 528 94.7
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 1.4e-285 985.7 524 94.8
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 3.0e-285 984.6 527 93.7
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 3.0e-285 984.6 524 94.5
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 4.1e-282 974.2 527 93.0
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 5.2e-277 957.2 499 96.2
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.8e-277 956.8 499 96.2
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.8e-277 956.8 499 96.2
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.8e-277 956.8 499 96.2
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.3e-269 931.8 499 94.6
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 3.1e-269 931.4 499 94.2
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.7e-267 924.5 508 92.5
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 4.9e-267 924.1 499 94.0
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.2e-266 921.4 503 93.0
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 7.3e-263 910.2 516 90.9
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 6.2e-262 907.1 527 88.8
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 8.9e-261 903.3 525 87.4
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 4.4e-252 874.4 457 96.1
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.4e-251 870.5 528 84.1
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 3.1e-245 851.7 489 89.6
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 8.4e-243 843.6 498 86.9
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 2.3e-240 835.5 522 83.9
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.3e-239 831.6 479 88.7
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 6.2e-230 800.8 421 96.2
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.8e-229 799.3 457 89.9
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 2.4e-229 798.9 420 96.2
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 1.3e-224 783.1 489 84.0
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 6.7e-224 780.8 452 88.9
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 9.6e-223 776.9 455 88.8
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 5.7e-207 724.5 392 93.9
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 4.5e-204 714.9 462 81.2
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 1.2e-196 690.3 461 79.8
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 1.0e-192 677.2 355 94.9
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.3e-184 649.4 457 76.6
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 6.3e-174 614.8 400 80.5
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 6.3e-174 614.8 318 95.0
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 9.5e-162 574.3 297 98.3
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.9e-157 560.1 522 61.3
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 7.0e-157 558.1 355 81.1
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 8.3e-150 534.6 284 93.7
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 3.3e-146 522.7 317 84.5
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 5.6e-146 521.9 284 92.3
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 2.8e-145 519.6 365 75.9
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 8.9e-144 514.6 254 99.2
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 4.4e-135 485.7 254 94.9
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 7.1e-133 478.4 527 54.5
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 1.0e-131 474.6 254 93.3
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.1e-130 471.1 265 91.7
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 4.3e-130 469.2 659 46.7
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 2.1e-129 466.8 242 97.1
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.4e-128 463.4 250 92.4
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 7.1e-125 451.8 274 83.6
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 7.1e-125 451.8 274 83.6
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 3.3e-122 443.0 307 75.9
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 1.6e-116 424.1 227 95.6
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 1.0e-115 421.4 235 91.9
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 4.0e-112 409.5 222 95.0
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 9.3e-109 398.3 312 71.8
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 1.8e-104 384.0 235 83.4
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 6.9e-104 382.1 432 50.7
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 1.2e-100 371.3 427 54.6
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 7.9e-100 368.6 204 92.6
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 4.1e-96 356.3 189 93.1
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 4.1e-96 356.3 189 93.1
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 4.1e-96 356.3 189 93.1
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 9.0e-96 355.1 262 77.5
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 9.0e-96 355.1 355 59.2
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 1.7e-94 350.9 189 91.5
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 3.6e-92 343.2 189 89.9
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 3.8e-86 323.2 161 100.0
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.1e-84 317.4 504 42.7
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 7.4e-82 308.9 321 56.1
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.3e-81 308.1 328 54.3
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 2.9e-78 297.0 197 77.2
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 2.3e-75 287.3 373 40.8
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.2e-73 280.8 159 89.9
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.9e-71 272.7 434 45.2
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 3.0e-59 233.8 118 98.3
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 5.2e-59 233.0 180 69.4
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 1.2e-58 231.9 128 88.3
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 2.6e-58 230.7 244 56.1
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 5.4e-56 223.0 283 49.5
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 2.7e-55 220.7 134 75.4
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 3.5e-55 220.3 138 83.3
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 5.9e-55 219.5 183 66.7
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 1.5e-53 214.9 235 57.4
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 1.5e-53 214.9 137 82.5
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 2.1e-52 211.1 148 77.0
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 4.0e-51 206.8 175 64.6
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 8.3e-49 199.1 105 90.5
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 8.3e-49 199.1 105 90.5
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 1.1e-48 198.7 100 97.0
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 1.2e-47 195.3 227 52.0
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 8.6e-46 189.1 105 88.6
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 1.9e-45 188.0 91 97.8
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 1.2e-44 185.3 109 82.6
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 8.0e-44 182.6 153 68.0
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 1.0e-43 182.2 197 53.3
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 3.4e-42 177.2 95 95.8
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 5.8e-42 176.4 165 60.6
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 2.4e-40 171.0 95 88.4
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 5.4e-40 169.9 91 94.5
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.5e-39 167.2 104 78.8
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 3.5e-39 167.2 94 87.2
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 1.3e-38 165.2 156 60.3
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 3.0e-38 164.1 81 95.1
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 1.9e-37 161.4 91 86.8
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 8.9e-35 152.5 99 77.8
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 8.9e-35 152.5 92 81.5
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 2.0e-34 151.4 124 65.3
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 4.4e-34 150.2 170 57.1
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 2.9e-33 147.5 112 72.3
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 6.4e-33 146.4 119 65.5
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 3.5e-31 140.6 85 83.5
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 5.1e-30 136.7 129 61.2
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 1.1e-27 129.0 89 74.2
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 4.0e-27 127.1 80 78.8
Lalb_Chr00c21g0405811 Lupinus albus HOM05D004537 ORTHO05D005492 1.7e-25 121.7 56 100.0
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.6e-23 113.6 76 75.0
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.3e-22 111.3 82 78.0
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 1.1e-21 109.0 239 36.0
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 1.5e-21 108.6 109 56.0
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 2.8e-20 104.4 65 80.0
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 3.6e-20 104.0 68 79.4
C04p32420 Brassica napus HOM05D004537 ORTHO05D005492 3.4e-18 97.4 70 74.3
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 4.9e-17 93.6 47 95.7
EL10Ac5g12760 Beta vulgaris HOM05D004537 ORTHO05D005492 1.9e-16 91.7 46 91.3
TPR.G39033 Trifolium pratense HOM05D004537 ORTHO05D005492 4.6e-15 87.0 50 84.0
Nitab4.5_0001127g0350 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.7e-14 85.1 42 92.9
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 3.9e-14 84.0 53 77.4
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 5.1e-14 83.6 50 80.0
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 1.1e-13 82.4 63 69.8
Nitab4.5_0002322g0200 Nicotiana tabacum HOM05D004537 ORTHO05D015169 1.5e-13 82.0 41 95.1
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 7.3e-13 79.7 50 80.0
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 9.6e-13 79.3 48 83.3
ATR1125G006 Amborella trichopoda HOM05D004537 ORTHO05D005492 4.0e-11 73.9 33 97.0
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 1.3e-09 68.9 34 94.1
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.3e-09 68.9 36 88.9
BolC4t24790H Brassica oleracea HOM05D004537 ORTHO05D005492 1.7e-09 68.6 35 88.6
Nitab4.5_0003938g0030 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.9e-08 65.1 50 66.0


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