Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 1.7e-163 579.3 300 100.0
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 2.1e-150 535.8 300 94.3
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 1.8e-112 409.8 301 76.7
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 1.0e-107 394.0 301 74.1
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 1.3e-107 393.7 307 73.9
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 3.8e-107 392.1 305 73.1
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 7.2e-106 387.9 303 72.9
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 1.6e-105 386.7 308 72.1
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 3.0e-104 382.5 305 71.8
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 7.4e-103 377.9 301 72.8
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 3.8e-99 365.5 300 71.3
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 4.2e-98 362.1 300 71.0
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 9.4e-98 360.9 300 70.7
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 1.5e-92 343.6 280 72.9
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 1.5e-79 300.4 299 59.5
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 2.0e-79 300.1 307 59.9
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 1.1e-77 294.3 299 59.2
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 1.2e-76 290.8 298 57.7
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 4.5e-76 288.9 297 57.9
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 1.7e-75 287.0 301 60.1
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 8.5e-75 284.6 298 57.7
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 7.5e-71 271.6 275 64.0
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 1.7e-70 270.4 334 50.6
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 1.7e-70 270.4 299 56.9
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 3.7e-70 269.2 300 55.3
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 3.7e-70 269.2 299 55.9
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 7.0e-69 265.0 300 56.7
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 4.5e-68 262.3 300 55.7
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 4.5e-68 262.3 302 55.3
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 8.5e-67 258.1 302 54.6
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 1.1e-66 257.7 304 54.6
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 2.7e-65 253.1 350 49.7
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 1.4e-64 250.8 301 54.8
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 6.8e-64 248.4 297 54.9
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 1.5e-63 247.3 311 49.8
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 3.4e-63 246.1 290 52.4
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 1.7e-62 243.8 300 51.7
arahy.Tifrunner.gnm1.ann1.Z5WHM0 Arachis hypogaea HOM05D006277 ORTHO05D007673 2.8e-62 243.0 259 59.1
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 8.3e-62 241.5 299 53.2
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 8.3e-62 241.5 299 53.2
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 2.4e-61 240.0 299 52.8
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 5.4e-61 238.8 299 53.2
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 7.0e-61 238.4 309 49.8
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 2.0e-60 236.9 299 53.2
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 2.7e-60 236.5 279 53.8
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 5.0e-59 232.3 313 48.9
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 6.6e-59 231.9 312 50.3
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 4.3e-58 229.2 334 48.8
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 7.3e-58 228.4 304 52.0
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 3.6e-57 226.1 282 51.8
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 4.7e-57 225.7 300 51.7
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 4.7e-57 225.7 304 50.0
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 4.7e-57 225.7 271 55.7
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 1.4e-56 224.2 301 52.8
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 2.3e-56 223.4 305 48.9
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 3.0e-56 223.0 300 51.3
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 3.0e-56 223.0 289 51.2
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 3.0e-56 223.0 303 49.5
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 3.4e-55 219.5 309 47.9
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 4.9e-54 215.7 336 48.5
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 5.4e-53 212.2 298 49.7
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 7.0e-53 211.8 301 49.2
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 9.2e-53 211.5 211 61.6
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 1.6e-52 210.7 307 47.6
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 4.6e-52 209.1 269 49.8
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 7.8e-52 208.4 298 50.3
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 7.8e-52 208.4 297 48.1
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 6.6e-51 205.3 284 49.6
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 8.6e-51 204.9 197 59.9
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 1.1e-50 204.5 299 46.2
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 1.5e-50 204.1 208 60.1
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 1.9e-50 203.8 238 55.5
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.6e-49 200.7 218 56.0
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 2.8e-49 199.9 303 46.5
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 1.0e-48 198.0 196 61.2
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 1.4e-48 197.6 249 54.2
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 2.3e-48 196.8 321 44.2
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 2.3e-48 196.8 300 49.0
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 5.2e-48 195.7 282 47.9
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 1.7e-46 190.7 312 43.6
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 1.7e-46 190.7 300 47.0
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 2.2e-46 190.3 304 46.4
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 4.9e-46 189.1 319 42.9
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 8.3e-46 188.3 277 46.2
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 2.4e-45 186.8 298 44.3
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 2.4e-45 186.8 292 46.6
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 4.1e-45 186.0 276 49.6
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 7.0e-45 185.3 232 53.9
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 1.2e-44 184.5 293 43.3
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 7.8e-44 181.8 312 43.6
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 7.8e-44 181.8 339 39.5
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 1.0e-43 181.4 194 55.7
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 1.3e-43 181.0 310 42.9
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 2.3e-43 180.3 219 50.2
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 1.1e-42 177.9 262 48.9
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 1.5e-42 177.6 214 55.6
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 4.3e-42 176.0 220 49.5
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 1.4e-40 171.0 187 58.3
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 1.4e-40 171.0 205 50.2
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 1.8e-40 170.6 156 60.3
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 1.8e-40 170.6 252 43.7
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 3.1e-40 169.9 184 58.2
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 4.4e-39 166.0 297 41.8
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 5.8e-39 165.6 268 44.4
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 2.2e-38 163.7 325 40.3
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 2.2e-38 163.7 325 40.3
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 4.9e-38 162.5 295 41.7
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 2.1e-36 157.1 312 41.7
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 3.3e-34 149.8 140 60.7
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 3.4e-31 139.8 298 39.9
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 5.8e-31 139.0 218 45.9
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 1.4e-29 134.4 135 54.1
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 2.7e-28 130.2 167 51.5
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 8.6e-27 125.2 224 43.8
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 8.1e-25 118.6 200 44.5
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 1.3e-22 111.3 210 39.5
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 1.7e-22 110.9 107 59.8
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 3.2e-21 106.7 285 35.1
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 6.0e-20 102.4 199 38.2
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 1.3e-19 101.3 160 44.4
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 3.9e-19 99.8 264 35.2
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 6.2e-17 92.4 130 41.5
CiPaw.10G123600 Carya illinoinensis HOM05D006277 ORTHO05D007673 4.0e-16 89.7 66 71.2
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 1.3e-14 84.7 201 33.8
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 1.9e-13 80.9 192 32.3
Glyma.03G049200 Glycine max HOM05D006277 ORTHO05D007673 4.8e-09 66.2 54 68.5


User provided reference genes

Program Settings