Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 3.1e-61 238.4 133 100.0
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 2.2e-30 136.0 132 61.4
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 3.1e-29 132.1 129 67.4
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 7.7e-28 127.5 145 57.9
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 7.7e-28 127.5 145 54.5
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 4.0e-24 115.2 132 58.3
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 1.7e-22 109.8 148 53.4
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 7.0e-21 104.4 144 56.2
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 7.0e-21 104.4 152 50.0
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 5.9e-20 101.3 144 48.6
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.1e-18 97.1 135 50.4
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 1.5e-18 96.7 150 52.0
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 4.2e-18 95.1 137 46.0
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 9.5e-18 94.0 145 45.5
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 1.2e-17 93.6 121 49.6
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 1.6e-17 93.2 145 48.3
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.6e-17 93.2 145 48.3
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 4.7e-17 91.7 62 75.8
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 4.7e-17 91.7 60 76.7
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 6.1e-17 91.3 61 73.8
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 1.0e-16 90.5 61 73.8
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 1.0e-16 90.5 61 73.8
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.4e-16 90.1 147 47.6
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 1.4e-16 90.1 144 44.4
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 4.0e-16 88.6 95 54.7
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 4.0e-16 88.6 140 43.6
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 1.2e-15 87.0 147 44.9
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 4.4e-15 85.1 61 73.8
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 4.4e-15 85.1 106 50.0
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 4.4e-15 85.1 61 70.5
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 7.5e-15 84.3 137 43.8
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 9.8e-15 84.0 141 41.8
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 1.3e-14 83.6 127 39.4
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 1.7e-14 83.2 127 39.4
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 1.7e-14 83.2 127 39.4
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 1.7e-14 83.2 61 65.6
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 2.2e-14 82.8 127 39.4
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 2.2e-14 82.8 127 39.4
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 2.2e-14 82.8 127 39.4
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 2.2e-14 82.8 127 39.4
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 2.2e-14 82.8 127 39.4
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 2.2e-14 82.8 141 46.8
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 3.7e-14 82.0 127 39.4
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 3.7e-14 82.0 136 43.4
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 4.9e-14 81.6 104 45.2
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 6.3e-14 81.3 141 47.5
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 6.3e-14 81.3 138 42.8
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 8.3e-14 80.9 58 69.0
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 1.1e-13 80.5 142 47.2
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 1.1e-13 80.5 111 44.1
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 1.1e-13 80.5 111 44.1
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 1.1e-13 80.5 62 59.7
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.1e-13 80.5 61 65.6
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.1e-13 80.5 61 65.6
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.1e-13 80.5 62 64.5
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.4e-13 80.1 62 64.5
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 1.4e-13 80.1 90 54.4
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.8e-13 79.7 61 62.3
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 2.4e-13 79.3 62 66.1
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 2.4e-13 79.3 54 70.4
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 4.1e-13 78.6 91 50.5
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 4.1e-13 78.6 91 50.5
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 5.4e-13 78.2 127 37.8
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 5.4e-13 78.2 127 37.8
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 7.0e-13 77.8 61 62.3
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 9.2e-13 77.4 58 60.3
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 9.2e-13 77.4 127 37.8
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 9.2e-13 77.4 112 42.0
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.2e-12 77.0 128 43.8
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.2e-12 77.0 128 43.8
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 1.2e-12 77.0 61 60.7
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 1.2e-12 77.0 95 48.4
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 1.6e-12 76.6 103 48.5
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.6e-12 76.6 61 59.0
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 1.6e-12 76.6 127 40.9
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 2.0e-12 76.3 129 45.7
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 3.5e-12 75.5 131 40.5
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 3.5e-12 75.5 61 60.7
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 3.5e-12 75.5 61 62.3
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 4.5e-12 75.1 127 40.2
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 5.9e-12 74.7 125 43.2
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 7.8e-12 74.3 128 40.6
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 7.8e-12 74.3 61 59.0
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.0e-11 73.9 61 59.0
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 1.0e-11 73.9 138 41.3
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 1.7e-11 73.2 133 42.1
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 2.3e-11 72.8 128 42.2
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 5.0e-11 71.6 127 42.5
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 8.6e-11 70.9 100 46.0
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 1.5e-10 70.1 127 37.8
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 3.3e-10 68.9 63 57.1
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 7.3e-10 67.8 96 46.9
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 7.3e-10 67.8 96 46.9
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 7.3e-10 67.8 96 46.9
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 7.3e-10 67.8 96 46.9
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 1.6e-09 66.6 55 60.0
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 1.6e-09 66.6 55 60.0
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 1.6e-09 66.6 96 45.8
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 2.1e-09 66.2 64 51.6
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 2.1e-09 66.2 133 39.8
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 4.7e-09 65.1 59 52.5
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 6.1e-09 64.7 50 64.0
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 1.0e-08 63.9 128 38.3
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 1.4e-08 63.5 99 41.4
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 1.8e-08 63.2 64 53.1
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 1.8e-08 63.2 64 53.1
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 1.8e-08 63.2 64 53.1
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 2.3e-08 62.8 128 37.5
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 2.0e-07 59.7 49 55.1
Eucgr.A01970 Eucalyptus grandis HOM05D006973 ORTHO05D008636 3.4e-07 58.9 62 54.8
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 7.5e-07 57.8 55 47.3
HPP92_024628 Vanilla planifolia HOM05D006973 ORTHO05D008636 1.3e-06 57.0 61 45.9


User provided reference genes

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