Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 0.0e+00 1291.6 756 100.0
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 4.2e-264 914.8 842 59.7
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 8.6e-257 890.6 840 58.5
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 3.3e-248 862.1 835 57.5
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 2.6e-245 852.4 834 56.5
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 7.0e-243 844.3 835 57.1
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 2.3e-241 839.3 857 55.2
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 1.1e-240 837.0 836 56.2
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 2.2e-236 822.8 839 56.0
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 3.2e-235 818.9 789 56.3
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 1.2e-234 817.0 795 56.0
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 5.6e-232 808.1 838 54.3
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.5e-155 554.3 788 41.9
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.2e-152 544.7 788 41.9
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 1.2e-152 544.7 788 41.9
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.7e-151 540.8 787 41.8
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 6.3e-151 538.9 809 41.7
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 4.1e-150 536.2 805 42.0
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.7e-148 530.8 778 43.7
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 2.2e-148 530.4 818 42.3
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 3.2e-147 526.6 801 40.9
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 4.2e-147 526.2 788 40.9
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 4.2e-147 526.2 776 41.2
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 5.5e-147 525.8 788 41.0
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 8.8e-145 518.5 844 39.1
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 1.4e-142 511.1 853 40.6
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 5.4e-142 509.2 802 41.0
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 3.8e-140 503.1 821 40.2
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 2.5e-139 500.4 783 41.3
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 7.0e-134 482.3 787 39.9
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 1.7e-132 477.6 803 38.7
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 1.9e-131 474.2 612 45.9
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 1.8e-129 467.6 639 44.3
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 2.3e-121 440.7 569 47.3
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 3.1e-121 440.3 810 36.8
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 6.0e-117 426.0 847 34.0
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 1.0e-116 425.2 940 32.6
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.7e-116 424.5 789 35.4
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.9e-116 423.3 814 35.0
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.1e-116 422.9 800 35.2
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 1.5e-115 421.4 794 35.9
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.5e-115 421.4 814 35.0
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 2.8e-114 417.2 798 35.3
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 8.1e-114 415.6 557 46.9
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 4.0e-113 413.3 826 35.8
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 5.2e-113 412.9 829 34.1
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 5.2e-113 412.9 829 34.3
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 6.8e-113 412.5 476 49.4
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.2e-111 407.5 929 32.7
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 3.7e-111 406.8 793 35.1
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 1.9e-110 404.4 583 43.6
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 1.6e-109 401.4 780 35.3
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.3e-108 397.5 550 43.6
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.3e-108 397.5 548 44.0
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.3e-108 397.5 548 43.8
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 6.6e-108 396.0 722 38.2
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 6.6e-108 396.0 952 32.4
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 8.6e-108 395.6 771 34.5
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 3.3e-107 393.7 734 35.3
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 3.3e-107 393.7 770 36.1
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 2.1e-106 391.0 507 46.0
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 1.5e-104 384.8 865 34.6
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.1e-102 378.6 715 36.8
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 5.4e-102 376.3 805 33.2
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.2e-101 375.2 835 32.8
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.2e-101 375.2 889 32.4
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.2e-101 375.2 806 33.3
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 6.0e-101 372.9 734 35.4
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 1.0e-100 372.1 801 34.2
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 1.0e-100 372.1 839 33.6
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.3e-100 371.7 805 33.7
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 4.3e-99 366.7 830 34.8
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 5.6e-99 366.3 821 34.1
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 3.1e-97 360.5 827 32.3
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 9.0e-97 359.0 777 32.9
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.5e-96 358.2 788 32.7
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 2.0e-96 357.8 805 32.4
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 7.6e-96 355.9 520 41.9
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.7e-95 354.8 832 30.8
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.7e-95 354.8 510 43.1
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.2e-93 348.6 832 30.9
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.1e-93 347.8 793 32.9
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 2.7e-93 347.4 843 33.3
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 1.7e-92 344.7 726 34.4
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 1.4e-89 335.1 809 33.0
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 4.0e-89 333.6 771 33.2
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 9.0e-89 332.4 819 33.0
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.7e-87 328.2 484 44.0
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.9e-87 327.4 832 31.2
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 4.9e-87 326.6 481 42.8
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 8.4e-87 325.9 560 35.7
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 2.4e-86 324.3 820 32.4
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 2.7e-85 320.9 548 41.2
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 4.3e-83 313.5 724 31.6
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 9.6e-83 312.4 797 30.6
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 9.6e-83 312.4 711 32.3
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 8.1e-82 309.3 907 27.9
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.4e-81 308.5 540 38.3
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 6.9e-81 306.2 853 30.1
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 1.3e-79 302.0 792 30.6
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.1e-78 298.9 770 30.8
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 7.9e-77 292.7 546 35.9
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 6.7e-76 289.7 664 31.9
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 8.7e-76 289.3 516 37.8
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 8.2e-74 282.7 504 38.9
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.5e-72 278.5 490 37.6
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.0e-72 278.1 480 38.8
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 2.6e-72 277.7 504 37.9
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 5.9e-72 276.6 483 37.3
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.7e-71 275.0 509 36.1
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 2.9e-71 274.2 512 36.9
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 1.1e-70 272.3 482 37.3
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.7e-69 267.7 530 34.7
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 2.3e-68 264.6 499 34.9
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 4.3e-67 260.4 506 36.0
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 4.3e-67 260.4 506 36.0
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 4.3e-67 260.4 495 36.2
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 8.2e-66 256.1 494 37.7
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 6.9e-65 253.1 486 37.2
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 2.0e-64 251.5 487 36.6
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 3.4e-64 250.8 497 37.0
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.9e-62 245.0 516 33.9
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 7.2e-62 243.0 484 35.1
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 7.2e-62 243.0 484 35.1
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 7.9e-61 239.6 473 34.9
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 3.3e-59 234.2 487 35.1
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 9.7e-59 232.6 487 34.9
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 5.3e-57 226.9 432 36.1
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 1.3e-55 222.2 675 28.3
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 8.5e-55 219.5 408 35.5
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 3.6e-53 214.2 479 31.5
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 4.4e-51 207.2 720 26.9
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 7.4e-51 206.5 295 45.1
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.2e-50 204.9 429 36.8
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 3.1e-49 201.1 390 37.7
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.1e-45 188.3 192 53.1
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 6.1e-45 186.8 254 45.7
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.8e-44 185.3 521 30.9
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 2.0e-43 181.8 478 31.2
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 7.5e-43 179.9 483 30.8
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 4.5e-40 170.6 507 31.8
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 6.3e-34 150.2 847 22.1
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 5.2e-28 130.6 730 23.7
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 4.4e-27 127.5 363 33.1
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 1.3e-26 125.9 105 54.3
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 6.3e-26 123.6 107 51.4
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 8.3e-26 123.2 344 32.8
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 1.0e-23 116.3 364 27.5
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 1.7e-23 115.5 103 48.5
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 3.8e-23 114.4 132 50.0
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 8.6e-23 113.2 764 21.3
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 7.3e-22 110.2 153 45.1
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.3e-15 89.4 712 22.6
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.1e-14 86.3 78 48.7
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 2.5e-14 85.1 95 43.2
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 8.9e-12 76.6 81 49.4
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 5.8e-11 73.9 105 37.1
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 2.9e-10 71.6 451 24.6
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 3.7e-10 71.2 72 47.2
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 1.5e-06 59.3 78 39.7
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 2.5e-06 58.5 51 52.9
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 3.3e-06 58.2 78 39.7
AagrBONN_evm.TU.Sc2ySwM_340.1970 Anthoceros agrestis HOM05D000465 ORTHO05D000301 7.3e-06 57.0 63 47.6
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 7.3e-06 57.0 65 33.8
AagrBONN_evm.TU.Sc2ySwM_344.3182 Anthoceros agrestis HOM05D000465 ORTHO05D000301 9.5e-06 56.6 67 44.8


User provided reference genes

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