Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 2.5e-214 748.8 478 100.0
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 2.0e-171 606.3 488 81.8
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 3.4e-166 589.0 479 80.8
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 5.6e-161 571.6 507 74.8
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 2.8e-160 569.3 484 77.1
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 6.8e-159 564.7 499 75.4
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 1.9e-156 556.6 506 72.1
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 2.6e-134 483.0 478 62.3
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 5.8e-134 481.9 486 73.3
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 3.9e-130 469.2 494 59.3
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 7.3e-129 464.9 476 58.2
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 1.3e-128 464.2 503 72.0
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 1.8e-127 460.3 480 66.7
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 3.1e-127 459.5 480 61.9
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 5.3e-127 458.8 484 65.9
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 5.3e-127 458.8 478 62.3
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.2e-126 457.6 481 65.7
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 1.5e-126 457.2 494 55.9
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 9.9e-126 454.5 481 63.2
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.8e-125 452.6 482 65.8
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 8.4e-125 451.4 482 64.9
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 1.1e-124 451.1 479 61.2
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.2e-123 447.6 482 66.6
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 2.7e-123 446.4 477 67.1
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 3.9e-122 442.6 492 56.3
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 1.5e-121 440.7 482 57.1
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 4.3e-121 439.1 490 57.1
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 2.1e-120 436.8 482 57.1
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 3.6e-120 436.0 508 53.0
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.8e-120 435.6 479 55.5
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.4e-119 434.1 492 58.3
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 4.0e-119 432.6 486 60.1
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.2e-118 431.0 484 59.5
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.5e-118 430.6 484 57.6
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 1.5e-118 430.6 475 59.4
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.0e-118 430.3 491 59.9
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 4.5e-118 429.1 507 52.7
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 9.9e-118 427.9 507 52.9
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.9e-117 425.6 507 52.5
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.9e-116 423.7 484 54.1
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 1.9e-116 423.7 489 57.7
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 1.2e-115 421.0 489 54.6
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 7.9e-115 418.3 495 56.8
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 1.3e-114 417.5 484 57.6
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 1.8e-114 417.2 480 54.0
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.8e-114 417.2 478 55.0
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.0e-114 416.4 480 55.4
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 8.7e-114 414.8 488 56.8
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 3.3e-113 412.9 479 55.5
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 7.4e-113 411.8 485 57.3
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 1.6e-112 410.6 486 56.6
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 2.1e-112 410.2 476 53.8
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 1.1e-111 407.9 498 61.0
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 1.4e-111 407.5 485 58.1
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 1.2e-110 404.4 483 57.3
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 1.5e-110 404.1 489 55.8
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 2.6e-110 403.3 484 56.6
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.5e-110 402.5 490 54.3
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.7e-109 400.6 490 54.9
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 2.9e-109 399.8 544 50.0
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 1.1e-108 397.9 477 57.9
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.9e-108 397.1 487 54.6
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 3.2e-108 396.4 517 50.9
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 4.2e-108 396.0 480 53.5
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 3.0e-106 389.8 485 54.4
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 5.1e-106 389.0 480 51.7
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 5.1e-106 389.0 480 68.1
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 6.7e-106 388.7 502 55.8
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 1.9e-105 387.1 494 51.0
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 3.7e-104 382.9 480 53.3
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 4.8e-104 382.5 500 54.8
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 6.3e-104 382.1 477 53.9
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.4e-103 380.2 480 52.9
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 2.4e-103 380.2 480 56.7
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 1.5e-102 377.5 479 56.6
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 3.4e-102 376.3 487 53.6
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 3.4e-102 376.3 484 55.0
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 1.0e-101 374.8 493 49.9
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 5.0e-101 372.5 493 54.4
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 8.5e-101 371.7 493 49.7
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 1.9e-100 370.5 477 56.8
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 4.2e-100 369.4 489 52.4
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 4.2e-100 369.4 507 48.1
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 1.2e-99 367.9 491 49.9
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 1.8e-98 364.0 491 49.7
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 6.7e-98 362.1 498 49.2
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 2.5e-97 360.1 494 48.6
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 2.5e-97 360.1 459 58.2
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 4.8e-96 355.9 489 54.0
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 6.3e-96 355.5 485 48.7
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 1.8e-95 354.0 484 52.5
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 2.9e-93 346.7 490 52.7
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 1.9e-92 344.0 455 55.6
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 3.2e-92 343.2 478 57.1
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 1.2e-91 341.3 466 51.3
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 3.9e-90 336.3 493 46.7
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.1e-89 334.7 482 57.7
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 2.0e-89 334.0 490 47.3
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 3.3e-89 333.2 496 51.0
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.2e-86 324.7 468 48.9
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.5e-86 324.3 487 45.6
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 3.4e-86 323.2 506 47.6
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 1.0e-85 321.6 491 45.8
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 1.0e-85 321.6 446 49.1
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 3.0e-82 310.1 509 42.6
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 1.5e-81 307.8 197 78.2
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 5.7e-81 305.8 504 41.7
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 1.7e-77 294.3 170 85.3
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 3.2e-76 290.0 462 51.1
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 6.1e-75 285.8 447 43.8
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 2.0e-73 280.8 470 42.8
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 7.5e-73 278.9 171 81.9
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 2.8e-72 276.9 508 40.0
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.8e-71 274.2 190 74.2
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 7.7e-70 268.9 478 42.9
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 1.7e-69 267.7 512 43.4
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 4.2e-68 263.1 416 48.1
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 9.4e-68 261.9 500 41.8
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 1.1e-63 248.4 424 43.9
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 6.1e-59 232.6 379 48.8
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 2.0e-57 227.6 171 72.5
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 6.3e-56 222.6 127 85.0
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 1.9e-52 211.1 418 40.4
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 6.4e-48 196.1 541 33.8
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 3.5e-46 190.3 267 50.2
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 3.0e-45 187.2 428 36.2
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 8.6e-37 159.1 158 52.5
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.8e-34 151.4 445 31.5
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 2.3e-34 151.0 162 48.8
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 2.0e-33 147.9 442 34.4
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 9.2e-31 139.0 147 47.6
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 8.9e-26 122.5 81 75.3
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 1.5e-25 121.7 142 50.7
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 9.9e-25 119.0 64 92.2
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.9e-24 117.5 96 65.6
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 3.6e-19 100.5 97 57.7
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 7.8e-14 82.8 170 34.7
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 1.7e-13 81.6 113 44.2
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 1.7e-13 81.6 113 44.2
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 3.0e-13 80.9 65 67.7
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.0e-13 80.9 116 48.3
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 3.3e-12 77.4 60 65.0
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 9.6e-12 75.9 451 26.2
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 9.6e-12 75.9 451 26.2
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 3.6e-11 73.9 92 52.2
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 2.7e-06 57.8 125 31.2
EL10Ac4g10331 Beta vulgaris HOM05D000230 ORTHO05D000176 7.9e-06 56.2 123 27.6
AUR62000045 Chenopodium quinoa HOM05D000230 ORTHO05D000176 7.9e-06 56.2 123 27.6
AUR62019215 Chenopodium quinoa HOM05D000230 ORTHO05D000176 7.9e-06 56.2 123 27.6


User provided reference genes

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