Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00272g0005891 Lotus japonicus HOM05D006187 ORTHO05D007621 2.3e-119 432.2 209 100.0
Ca_06320_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 1.4e-111 406.4 209 93.3
Ca_30809_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 1.4e-111 406.4 209 93.3
arahy.Tifrunner.gnm1.ann1.KHU2SV Arachis hypogaea HOM05D006187 ORTHO05D007621 4.4e-110 401.4 209 90.4
arahy.Tifrunner.gnm1.ann1.YIAG1Z Arachis hypogaea HOM05D006187 ORTHO05D007621 4.4e-110 401.4 209 90.4
TPR.G1184 Trifolium pratense HOM05D006187 ORTHO05D007621 5.7e-110 401.0 209 91.4
Psat2g010920 Pisum sativum HOM05D006187 ORTHO05D007621 9.7e-110 400.2 209 90.4
COL.COLO4_09662 Corchorus olitorius HOM05D006187 ORTHO05D007621 9.1e-108 393.7 209 89.0
Phvul.008G266900 Phaseolus vulgaris HOM05D006187 ORTHO05D007621 2.6e-107 392.1 209 89.5
Manes.15G071900 Manihot esculenta HOM05D006187 ORTHO05D007621 3.5e-107 391.7 209 88.0
VMungo0647G0583 Vigna mungo HOM05D006187 ORTHO05D007621 5.9e-107 391.0 209 88.5
Gohir.D01G066500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 1.0e-106 390.2 209 87.6
Gorai.002G088500 Gossypium raimondii HOM05D006187 ORTHO05D007621 3.8e-106 388.3 209 87.1
Thecc.07G036900 Theobroma cacao HOM05D006187 ORTHO05D007621 1.9e-105 386.0 209 86.1
THA.LOC104816937 Tarenaya hassleriana HOM05D006187 ORTHO05D007621 4.2e-105 384.8 209 87.6
Potri.001G435500 Populus trichocarpa HOM05D006187 ORTHO05D007621 5.5e-105 384.4 209 86.1
Gohir.A01G079500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 7.2e-105 384.0 209 86.1
Haze_09689 Corylus avellana HOM05D006187 ORTHO05D007621 3.6e-104 381.7 209 86.6
MD11G1218600 Malus domestica HOM05D006187 ORTHO05D007621 6.1e-104 380.9 209 87.1
Duzib170G0579 Durio zibethinus HOM05D006187 ORTHO05D007621 1.4e-103 379.8 209 85.6
AUR62020447 Chenopodium quinoa HOM05D006187 ORTHO05D007621 2.3e-103 379.0 209 85.2
Cc05_g13690 Coffea canephora HOM05D006187 ORTHO05D007621 5.2e-103 377.9 209 85.2
TWI39G1048 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 5.2e-103 377.9 209 84.2
Potri.011G139500 Populus trichocarpa HOM05D006187 ORTHO05D007621 6.7e-103 377.5 209 85.2
TAR626G1058 Trochodendron aralioides HOM05D006187 ORTHO05D007621 6.7e-103 377.5 209 85.6
Prupe.4G212700 Prunus persica HOM05D006187 ORTHO05D007621 8.8e-103 377.1 209 85.2
CiPaw.11G189300 Carya illinoinensis HOM05D006187 ORTHO05D007621 1.1e-102 376.7 209 88.0
Ah.06g186030 Amaranthus hybridus HOM05D006187 ORTHO05D007621 4.4e-102 374.8 209 82.3
DCAR_022562 Daucus carota HOM05D006187 ORTHO05D007621 4.4e-102 374.8 209 82.8
Cfa020345 Carpinus fangiana HOM05D006187 ORTHO05D007621 5.7e-102 374.4 209 84.7
Nn1g03532 Nelumbo nucifera HOM05D006187 ORTHO05D007621 5.7e-102 374.4 209 83.3
Sed0017183 Sechium edule HOM05D006187 ORTHO05D007621 5.7e-102 374.4 209 84.2
Lalb_Chr10g0106971 Lupinus albus HOM05D006187 ORTHO05D007621 7.4e-102 374.0 209 83.7
Oeu005532.1 Olea europaea HOM05D006187 ORTHO05D007621 9.7e-102 373.6 209 83.3
MSTRG.26280 Avicennia marina HOM05D006187 ORTHO05D007621 1.3e-101 373.2 209 83.3
Eucgr.F00764 Eucalyptus grandis HOM05D006187 ORTHO05D007621 1.3e-101 373.2 209 83.3
RhsimUnG0250600 Rhododendron simsii HOM05D006187 ORTHO05D007621 1.7e-101 372.9 209 83.7
RcHm_v2.0_Chr5g0039431 Rosa chinensis HOM05D006187 ORTHO05D007621 1.7e-101 372.9 209 84.2
AUR62015764 Chenopodium quinoa HOM05D006187 ORTHO05D007621 2.2e-101 372.5 209 83.3
Ciclev10009486m.g Citrus clementina HOM05D006187 ORTHO05D007621 3.7e-101 371.7 209 83.7
Solyc07g064590.3 Solanum lycopersicum HOM05D006187 ORTHO05D007621 3.7e-101 371.7 209 83.7
CsaV3_7G021800 Cucumis sativus L. HOM05D006187 ORTHO05D007621 4.8e-101 371.3 209 83.3
PGR083G2749 Punica granatum HOM05D006187 ORTHO05D007621 4.8e-101 371.3 209 83.7
PGSC0003DMG400022319 Solanum tuberosum HOM05D006187 ORTHO05D007621 4.8e-101 371.3 209 83.3
A06p02950 Brassica napus HOM05D006187 ORTHO05D007621 1.1e-100 370.2 209 83.3
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 1.1e-100 370.2 209 83.7
FvH4_3g22670 Fragaria vesca HOM05D006187 ORTHO05D007621 1.1e-100 370.2 209 84.7
Medtr5g092720 Medicago truncatula HOM05D006187 ORTHO05D007621 1.1e-100 370.2 190 92.1
ECA246G0646 Erigeron canadensis HOM05D006187 ORTHO05D007621 2.4e-100 369.0 209 83.3
EL10Ac4g07806 Beta vulgaris HOM05D006187 ORTHO05D007621 3.1e-100 368.6 209 82.8
CANSAT11G0252 Cannabis sativa HOM05D006187 ORTHO05D007621 3.1e-100 368.6 209 83.3
CAN.G337.132 Capsicum annuum HOM05D006187 ORTHO05D007621 3.1e-100 368.6 209 82.8
Aa31LG10G3660 Aethionema arabicum HOM05D006187 ORTHO05D007621 4.1e-100 368.2 209 83.3
Sopen07g032780 Solanum pennellii HOM05D006187 ORTHO05D007621 4.1e-100 368.2 209 82.8
Zm00001eb207490 Zea mays HOM05D006187 ORTHO05D007621 7.0e-100 367.5 209 83.3
Dinv40753 Davidia involucrata HOM05D006187 ORTHO05D007621 1.6e-99 366.3 209 83.7
CiPaw.12G129700 Carya illinoinensis HOM05D006187 ORTHO05D007621 2.0e-99 365.9 209 84.2
Sp1g37520 Schrenkiella parvula HOM05D006187 ORTHO05D007621 2.0e-99 365.9 209 81.8
CARHR040720 Cardamine hirsuta HOM05D006187 ORTHO05D007621 3.5e-99 365.2 209 81.8
BcaB07g33507 Brassica carinata HOM05D006187 ORTHO05D007621 4.5e-99 364.8 209 81.8
C06p05930 Brassica napus HOM05D006187 ORTHO05D007621 4.5e-99 364.8 209 81.8
PSO210G0259 Papaver somniferum HOM05D006187 ORTHO05D007621 4.5e-99 364.8 209 81.3
AL1G58340 Arabidopsis lyrata HOM05D006187 ORTHO05D007621 5.9e-99 364.4 209 81.3
BraA06t23501Z Brassica rapa HOM05D006187 ORTHO05D007621 7.7e-99 364.0 210 82.9
AT1G50670 Arabidopsis thaliana HOM05D006187 ORTHO05D007621 1.0e-98 363.6 209 81.3
Migut.K00331 Erythranthe guttata HOM05D006187 ORTHO05D007621 1.0e-98 363.6 208 81.2
GSVIVG01037647001 Vitis vinifera HOM05D006187 ORTHO05D007621 1.0e-98 363.6 209 81.3
Peaxi162Scf00964g00021 Petunia axillaris HOM05D006187 ORTHO05D007621 1.3e-98 363.2 209 81.3
Aqoxy1G03401 Aquilegia oxysepala HOM05D006187 ORTHO05D007621 2.2e-98 362.5 209 80.9
PSO832G1277 Papaver somniferum HOM05D006187 ORTHO05D007621 3.8e-98 361.7 209 80.4
Sc16g0006050 Simmondsia chinensis HOM05D006187 ORTHO05D007621 5.0e-98 361.3 209 81.3
BcaC08g43245 Brassica carinata HOM05D006187 ORTHO05D007621 6.5e-98 360.9 209 81.3
Carub.0001s3971 Capsella rubella HOM05D006187 ORTHO05D007621 1.1e-97 360.1 209 81.3
FAN16G3112 Fragaria x ananassa HOM05D006187 ORTHO05D007621 4.2e-97 358.2 221 79.6
CSS0049447 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 5.5e-97 357.8 209 81.8
SGA_v2.0_scaffold347G49550 Striga asiatica HOM05D006187 ORTHO05D007621 1.2e-96 356.7 209 80.9
SalBow5G2755 Salvia bowleyana HOM05D006187 ORTHO05D007621 2.1e-96 355.9 225 76.0
Thhalv10011780m.g Eutrema salsugineum HOM05D006187 ORTHO05D007621 2.7e-96 355.5 209 79.9
HPP92_016292 Vanilla planifolia HOM05D006187 ORTHO05D007621 6.1e-96 354.4 208 80.8
FAN11G0395 Fragaria x ananassa HOM05D006187 ORTHO05D007621 1.0e-95 353.6 230 77.0
Glyma.02G291000 Glycine max HOM05D006187 ORTHO05D007621 1.8e-95 352.8 193 87.0
FAN25G1478 Fragaria x ananassa HOM05D006187 ORTHO05D007621 1.2e-94 350.1 230 76.1
unitig_746.g26546 Utricularia gibba HOM05D006187 ORTHO05D007621 2.0e-94 349.4 209 78.9
Lalb_Chr17g0348481 Lupinus albus HOM05D006187 ORTHO05D007621 4.4e-94 348.2 190 86.3
CSS0042680 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 7.5e-94 347.4 209 78.0
FAN21G2137 Fragaria x ananassa HOM05D006187 ORTHO05D007621 7.5e-94 347.4 240 73.3
ATR0794G016 Amborella trichopoda HOM05D006187 ORTHO05D007621 1.7e-93 346.3 209 78.0
Glyma.14G023700 Glycine max HOM05D006187 ORTHO05D007621 1.7e-93 346.3 185 88.6
Oeu062696.2 Olea europaea HOM05D006187 ORTHO05D007621 4.8e-93 344.7 243 69.5
Sabra11G0125500 Salix brachista HOM05D006187 ORTHO05D007621 3.5e-91 338.6 288 61.5
CDE05G0514 Ceratophyllum demersum HOM05D006187 ORTHO05D007621 1.7e-90 336.3 209 76.1
MELO3C013167.2 Cucumis melo HOM05D006187 ORTHO05D007621 1.7e-90 336.3 189 82.0
HanXRQChr08g0233871 Helianthus annuus HOM05D006187 ORTHO05D007621 5.0e-90 334.7 187 85.0
TWI38G1854 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 6.5e-90 334.3 187 83.4
ClCG09G010800 Citrullus lanatus HOM05D006187 ORTHO05D007621 1.1e-89 333.6 209 76.6
HanXRQChr05g0159371 Helianthus annuus HOM05D006187 ORTHO05D007621 1.6e-88 329.7 187 83.4
SMO201G0052 Selaginella moellendorffii HOM05D006187 ORTHO05D007621 1.6e-88 329.7 208 71.6
SEGI_20110 Sequoiadendron giganteum HOM05D006187 ORTHO05D007621 2.7e-88 328.9 206 75.7
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 1.4e-87 326.6 209 74.6
Lsat_1_v5_gn_5_3960 Lactuca sativa HOM05D006187 ORTHO05D007621 1.4e-87 326.6 191 81.2
Mapoly0105s0022 Marchantia polymorpha HOM05D006187 ORTHO05D007621 3.4e-86 322.0 209 72.2
Pp3c26_11120 Physcomitrium patens HOM05D006187 ORTHO05D007621 3.7e-85 318.5 206 72.3
AagrBONN_evm.TU.Sc2ySwM_344.4367 Anthoceros agrestis HOM05D004720 ORTHO05D007621 3.0e-79 298.9 205 67.3
QL08p010320 Quercus lobata HOM05D006187 ORTHO05D007621 3.0e-79 298.9 197 74.1
Nitab4.5_0011129g0020 Nicotiana tabacum HOM05D006187 ORTHO05D007621 8.3e-77 290.8 210 71.0
vmacro09715 Vaccinium macrocarpon HOM05D006187 ORTHO05D007621 1.5e-73 280.0 165 80.0
BolC6t35706H Brassica oleracea HOM05D006187 ORTHO05D007621 2.5e-73 279.3 165 78.8
Lj1A872G52 Lonicera japonica HOM05D006187 ORTHO05D007621 4.9e-69 265.0 151 82.1
MCO07G461 Micromonas commoda HOM05D006187 ORTHO05D007621 3.9e-66 255.4 208 61.1
Cre09.g409050 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 5.0e-66 255.0 203 60.1
SHI26611 Sapria himalayana HOM05D006187 ORTHO05D007621 1.2e-64 250.4 179 67.6
Hma1.2p1_0673F.1_g201350 Hydrangea macrophylla HOM05D006187 ORTHO05D007621 3.4e-62 242.3 209 59.8
CBR_g54108 Chara braunii HOM05D006187 ORTHO05D007621 4.4e-62 241.9 168 69.6
PSO675G5262 Papaver somniferum HOM05D006187 ORTHO05D007621 1.9e-60 236.5 210 54.3
HPP92_016312 Vanilla planifolia HOM05D006187 ORTHO05D007621 1.5e-57 226.9 135 79.3
PRCOL_00006206 Prasinoderma coloniale HOM05D006187 ORTHO05D007621 4.7e-56 221.9 206 54.4
Cpa.g.sc97.3 Carica papaya HOM05D006187 ORTHO05D007621 3.2e-52 209.1 193 59.1
PSO541G4439 Papaver somniferum HOM05D006187 ORTHO05D007621 2.6e-46 189.5 206 47.1
MBI18_g14476_MAGBIO Magnolia biondii HOM05D006187 ORTHO05D007621 3.3e-41 172.6 151 59.6
Haze_26155 Corylus avellana HOM05D006187 ORTHO05D007621 6.2e-40 168.3 207 39.6
Os02g0164800 Oryza sativa ssp. japonica HOM05D006187 ORTHO05D007621 2.1e-35 153.3 84 84.5
Cre06.g274700 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 3.9e-34 149.1 171 42.7
Prupe.4G233700 Prunus persica HOM05D006187 ORTHO05D007621 1.1e-33 147.5 126 61.1
Nitab4.5_0001913g0160 Nicotiana tabacum HOM05D006187 ORTHO05D007621 1.3e-32 144.1 84 76.2
PSO675G9324 Papaver somniferum HOM05D006187 ORTHO05D007621 6.9e-31 138.3 135 48.9
Cfa025770 Carpinus fangiana HOM05D006187 ORTHO05D007621 4.2e-28 129.0 227 35.7
HPP92_016311 Vanilla planifolia HOM05D006187 ORTHO05D007621 5.1e-26 122.1 74 78.4
AUR62015776 Chenopodium quinoa HOM05D006187 ORTHO05D007621 6.7e-18 95.1 83 61.4
QL08p010315 Quercus lobata HOM05D006187 ORTHO05D007621 8.7e-18 94.7 43 100.0


User provided reference genes

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