Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 4.8e-105 384.4 184 100.0
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 1.3e-86 323.2 184 82.6
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 1.7e-86 322.8 186 83.3
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 8.6e-86 320.5 184 82.1
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 1.5e-85 319.7 187 83.4
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 5.6e-85 317.8 187 81.8
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 3.6e-84 315.1 186 82.8
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 3.6e-84 315.1 182 82.4
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 2.0e-82 309.3 186 79.0
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 3.4e-82 308.5 182 79.1
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 5.4e-80 301.2 180 80.6
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 1.0e-78 297.0 181 75.7
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 2.3e-78 295.8 177 76.8
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 6.6e-78 294.3 184 75.5
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 1.5e-77 293.1 181 74.6
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 1.6e-76 289.7 183 74.3
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.1e-76 289.3 177 73.4
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 2.8e-76 288.9 177 73.4
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 8.1e-76 287.3 181 72.4
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 1.8e-75 286.2 177 74.0
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 4.4e-74 281.6 179 70.4
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 5.8e-74 281.2 181 71.8
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 9.9e-74 280.4 183 69.4
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 1.3e-73 280.0 180 71.7
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.1e-72 276.9 176 71.0
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 1.4e-72 276.6 177 71.8
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 3.2e-72 275.4 181 69.1
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 9.2e-72 273.9 180 68.3
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 1.6e-71 273.1 176 68.8
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 1.6e-71 273.1 184 68.5
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 1.6e-71 273.1 172 72.7
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 2.7e-71 272.3 174 71.3
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 2.7e-71 272.3 174 71.3
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 6.0e-71 271.2 181 66.3
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 7.8e-71 270.8 173 71.7
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 1.3e-70 270.0 174 70.1
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 1.1e-69 266.9 181 66.3
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 1.1e-69 266.9 181 66.3
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 1.9e-69 266.2 184 66.8
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 2.5e-69 265.8 181 68.5
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 3.3e-69 265.4 180 66.7
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 4.3e-69 265.0 174 67.2
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.6e-68 263.1 177 68.9
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 1.6e-68 263.1 177 68.4
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 2.1e-68 262.7 180 67.2
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 2.8e-68 262.3 181 65.7
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 3.6e-68 261.9 176 66.5
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 6.2e-68 261.2 186 65.1
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 8.1e-68 260.8 181 65.7
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 1.1e-67 260.4 175 66.3
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 1.4e-67 260.0 173 68.2
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 1.4e-67 260.0 179 66.5
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 1.4e-67 260.0 174 65.5
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 1.4e-67 260.0 177 66.7
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 1.4e-67 260.0 174 67.8
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 1.8e-67 259.6 182 68.1
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 3.1e-67 258.8 173 67.1
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 4.0e-67 258.5 176 68.2
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 5.2e-67 258.1 178 68.0
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 6.8e-67 257.7 179 67.0
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 6.8e-67 257.7 174 67.2
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 1.2e-66 256.9 174 66.1
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 2.0e-66 256.1 179 65.4
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 3.4e-66 255.4 177 63.3
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 3.4e-66 255.4 177 63.3
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 9.9e-66 253.8 176 65.3
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 1.7e-65 253.1 178 65.2
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 3.8e-65 251.9 172 66.9
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 4.9e-65 251.5 180 65.6
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 8.4e-65 250.8 175 64.0
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 1.4e-64 250.0 180 64.4
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 1.9e-64 249.6 175 65.7
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 2.4e-64 249.2 186 63.4
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 1.2e-63 246.9 179 62.0
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 1.6e-63 246.5 178 65.2
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 2.1e-63 246.1 174 64.9
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 2.7e-63 245.7 178 65.2
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 2.7e-63 245.7 171 64.9
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 7.8e-63 244.2 152 72.4
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 3.0e-62 242.3 179 63.1
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 8.7e-62 240.7 146 74.0
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 8.7e-62 240.7 176 59.1
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 1.1e-61 240.4 165 65.5
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 1.1e-61 240.4 176 63.6
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 1.9e-61 239.6 178 61.8
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 2.5e-61 239.2 180 62.8
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 5.6e-61 238.0 179 60.9
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 5.6e-61 238.0 166 66.3
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 9.6e-61 237.3 166 65.7
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 2.8e-60 235.7 185 59.5
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 2.8e-60 235.7 185 59.5
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 1.8e-59 233.0 177 62.7
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 2.4e-59 232.6 180 57.8
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 2.4e-59 232.6 177 58.2
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 6.9e-59 231.1 165 64.8
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 2.0e-58 229.6 168 63.1
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 5.8e-58 228.0 153 66.0
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 4.9e-57 224.9 152 69.1
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 7.1e-56 221.1 176 58.0
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 7.1e-56 221.1 154 63.6
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 3.6e-52 208.8 152 61.8
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 1.5e-50 203.4 161 57.1
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 9.9e-50 200.7 165 55.8
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 1.4e-48 196.8 154 57.8
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 5.1e-46 188.3 175 49.7
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 3.3e-45 185.7 129 62.0
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 7.4e-45 184.5 179 46.4
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 3.7e-44 182.2 178 47.8
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 6.9e-43 177.9 128 61.7
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 2.7e-39 166.0 174 46.0
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 6.2e-36 154.8 139 53.2
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 4.5e-34 148.7 175 44.6
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.2e-26 124.0 127 48.8
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 3.9e-22 109.0 157 38.2
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 1.1e-19 100.9 178 36.5
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 3.1e-19 99.4 75 61.3
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 2.6e-18 96.3 174 32.8
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 2.2e-17 93.2 62 59.7
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 1.3e-09 67.4 97 38.1
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 3.2e-08 62.8 180 31.1
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 3.2e-08 62.8 180 31.1
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 4.2e-08 62.4 180 31.1
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 7.2e-08 61.6 177 29.9
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 9.4e-08 61.2 177 28.8
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 9.4e-08 61.2 177 28.8
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 9.4e-08 61.2 177 28.8
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 9.4e-08 61.2 182 30.2
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 9.4e-08 61.2 180 30.6
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 1.2e-07 60.8 182 29.7
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 1.2e-07 60.8 187 27.8
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.2e-07 60.8 182 30.2
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.2e-07 60.8 182 30.2
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 1.6e-07 60.5 178 27.0
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 1.6e-07 60.5 178 27.0
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 2.1e-07 60.1 176 29.0
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 2.7e-07 59.7 177 29.9
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 2.7e-07 59.7 182 29.7
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 2.7e-07 59.7 182 28.6
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 2.7e-07 59.7 180 28.3
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 2.7e-07 59.7 171 27.5
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 3.6e-07 59.3 177 29.9
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 4.7e-07 58.9 180 30.0
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 4.7e-07 58.9 185 27.6
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 6.1e-07 58.5 174 29.3
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 6.1e-07 58.5 156 32.1
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 8.0e-07 58.2 186 29.0
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 1.0e-06 57.8 178 29.2
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 1.0e-06 57.8 174 29.3
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 1.0e-06 57.8 177 31.1
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 1.0e-06 57.8 178 28.1
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 1.4e-06 57.4 180 27.8
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 1.4e-06 57.4 180 27.8
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 1.4e-06 57.4 183 26.8
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 1.8e-06 57.0 183 28.4
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 1.8e-06 57.0 180 27.8
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 2.3e-06 56.6 173 29.5
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 3.0e-06 56.2 182 28.6
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 3.0e-06 56.2 183 29.0
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 4.0e-06 55.8 152 30.3
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 5.2e-06 55.5 183 29.0
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 6.7e-06 55.1 180 27.2
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 8.8e-06 54.7 171 29.2
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 8.8e-06 54.7 180 28.3
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 8.8e-06 54.7 173 28.3
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 8.8e-06 54.7 173 30.1
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 8.8e-06 54.7 181 30.4
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 8.8e-06 54.7 180 28.9
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 8.8e-06 54.7 151 29.8


User provided reference genes

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