Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 7.9e-200 700.3 364 100.0
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 4.9e-141 505.0 413 68.5
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 8.1e-128 461.1 486 55.8
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 1.7e-125 453.4 488 57.2
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 3.7e-125 452.2 484 57.6
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 1.0e-122 444.1 501 53.9
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 5.1e-122 441.8 488 55.3
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 6.2e-120 434.9 491 55.0
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 5.2e-119 431.8 496 52.2
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 4.4e-118 428.7 492 53.5
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 5.8e-118 428.3 481 54.7
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 9.9e-118 427.6 488 52.9
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 2.2e-117 426.4 496 52.6
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 4.9e-117 425.2 393 63.6
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 1.3e-114 417.2 483 52.8
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 2.3e-114 416.4 431 56.6
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 4.3e-113 412.1 492 51.6
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 5.6e-113 411.8 480 53.5
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 5.6e-113 411.8 468 53.2
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 9.6e-113 411.0 475 53.9
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 1.6e-112 410.2 473 53.9
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 1.6e-112 410.2 446 54.9
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 3.6e-112 409.1 468 52.8
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 6.2e-112 408.3 465 54.2
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 4.0e-111 405.6 507 48.1
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 1.2e-110 404.1 495 52.5
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 5.8e-110 401.7 471 53.9
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 5.8e-110 401.7 470 54.0
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 1.3e-109 400.6 475 51.6
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 3.8e-109 399.1 486 52.1
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 6.4e-109 398.3 492 50.8
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 9.3e-108 394.4 476 52.7
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 1.2e-107 394.0 492 51.0
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 2.1e-107 393.3 447 51.2
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 2.1e-107 393.3 457 53.8
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 2.7e-107 392.9 477 52.4
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 3.5e-107 392.5 453 53.2
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 4.6e-107 392.1 470 51.5
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 7.8e-107 391.3 355 60.8
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 7.8e-107 391.3 466 50.4
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 1.3e-106 390.6 476 51.7
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 3.0e-106 389.4 459 51.4
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 8.7e-106 387.9 434 52.5
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 1.1e-105 387.5 439 53.5
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 1.5e-105 387.1 465 52.5
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.9e-105 386.7 348 59.5
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 1.6e-104 383.6 457 49.7
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.6e-104 383.6 459 51.2
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 3.6e-104 382.5 494 49.0
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 4.8e-104 382.1 576 44.8
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 6.2e-104 381.7 463 51.0
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 8.1e-104 381.3 499 48.5
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 1.1e-103 380.9 467 49.3
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.4e-103 380.6 459 51.9
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 1.8e-103 380.2 449 53.0
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 3.1e-103 379.4 462 51.9
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 5.3e-103 378.6 263 71.9
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.2e-102 377.5 460 50.4
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 9.9e-102 374.4 398 54.0
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 2.2e-101 373.2 485 50.3
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 2.9e-101 372.9 262 71.4
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 3.8e-101 372.5 401 57.6
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 1.4e-100 370.5 453 50.6
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 1.9e-100 370.2 464 53.2
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 4.2e-100 369.0 441 51.7
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 5.4e-100 368.6 263 70.7
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 1.2e-99 367.5 544 44.9
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 6.0e-99 365.2 442 53.6
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 7.9e-99 364.8 401 56.6
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.0e-98 364.4 431 52.7
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 1.8e-98 363.6 409 57.2
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 3.9e-98 362.5 412 55.3
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 5.6e-97 358.6 457 50.1
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 1.1e-95 354.4 473 47.8
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 5.3e-95 352.1 450 49.3
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 1.2e-94 350.9 452 49.8
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 1.5e-94 350.5 501 46.5
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 1.5e-94 350.5 436 51.1
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 1.5e-94 350.5 474 44.3
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 2.6e-94 349.7 441 49.7
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 4.5e-94 349.0 436 50.9
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 7.6e-94 348.2 433 53.3
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 1.0e-93 347.8 445 49.9
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 1.7e-93 347.1 481 43.2
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 2.2e-93 346.7 483 46.2
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 2.9e-93 346.3 481 45.7
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 4.9e-93 345.5 477 43.4
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 1.1e-92 344.4 458 50.4
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 1.1e-92 344.4 256 69.5
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 1.1e-92 344.4 262 66.0
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 3.2e-92 342.8 491 42.4
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 1.6e-91 340.5 436 51.1
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 1.0e-90 337.8 519 44.7
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 5.1e-90 335.5 263 63.9
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 1.5e-89 334.0 557 41.5
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 3.3e-89 332.8 436 49.8
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 9.6e-89 331.3 475 46.5
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 8.2e-88 328.2 263 62.4
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 1.4e-87 327.4 276 61.6
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.8e-87 327.0 264 59.1
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.8e-87 327.0 264 59.1
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 2.6e-86 323.2 262 61.8
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 1.5e-81 307.4 150 90.7
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 2.5e-81 306.6 283 58.3
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 9.7e-81 304.7 149 89.9
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 6.7e-74 282.0 433 44.8
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 7.4e-73 278.5 137 89.1
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 1.1e-71 274.6 399 44.6
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 5.9e-70 268.9 440 43.2
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 1.5e-65 254.2 144 82.6
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 1.3e-64 251.1 175 74.3
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 2.2e-61 240.4 215 55.3
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 2.6e-54 216.9 112 88.4
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 1.0e-53 214.9 268 46.6
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 8.0e-51 205.3 359 43.7
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 4.4e-49 199.5 393 39.2
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 5.7e-49 199.1 102 90.2
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 1.1e-47 194.9 261 41.8
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 3.1e-47 193.4 247 40.9
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 2.0e-46 190.7 93 89.2
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.3e-45 188.0 97 90.7
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 1.6e-43 181.0 96 87.5
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 4.7e-43 179.5 312 46.2
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 5.2e-42 176.0 167 55.7
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.2e-41 174.9 129 63.6
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 1.2e-41 174.9 97 84.5
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 7.7e-38 162.2 310 40.3
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 1.7e-37 161.0 84 85.7
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 8.6e-37 158.7 86 87.2
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 1.5e-36 157.9 388 34.8
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 1.9e-36 157.5 397 36.5
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 1.9e-36 157.5 83 84.3
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 6.1e-35 152.5 80 90.0
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 1.8e-34 151.0 301 41.5
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 2.6e-33 147.1 80 87.5
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 9.8e-33 145.2 373 36.5
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 2.2e-32 144.1 80 83.8
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 1.8e-31 141.0 358 37.2
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 8.6e-29 132.1 310 37.7
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.9e-28 131.0 421 33.5
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.8e-26 124.4 84 73.8
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 2.4e-23 114.0 71 76.1
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.2e-22 111.7 257 42.4
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 1.7e-21 107.8 78 66.7
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 1.5e-20 104.8 60 85.0
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 2.5e-20 104.0 311 34.7
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 3.7e-16 90.1 82 59.8
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 6.0e-14 82.8 260 35.0
FAN23G0276 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.3e-13 80.9 110 57.3
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.0e-13 80.5 242 35.5
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 4.3e-12 76.6 180 42.2
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 9.5e-12 75.5 43 81.4
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.2e-11 75.1 106 57.5
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 4.4e-09 66.6 133 34.6


User provided reference genes

Program Settings