Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00081g0017189 Lotus japonicus HOM05D008692 ORTHO05D011196 7.0e-205 717.2 407 100.0
LjContig00081g0016484 Lotus japonicus HOM05D008692 ORTHO05D011196 1.9e-69 267.3 215 72.1
LjContig00081g0007565 Lotus japonicus HOM05D001707 ORTHO05D001694 9.5e-53 211.8 152 80.3
LjContig00081g0012246 Lotus japonicus HOM05D008692 ORTHO05D011196 1.9e-32 144.4 261 41.4
Lj1g0006584 Lotus japonicus HOM05D008692 ORTHO05D011196 1.4e-27 128.3 153 50.3
TPR.G8604 Trifolium pratense HOM05D001707 ORTHO05D001694 1.1e-24 118.6 264 48.5
Ca_06393_v3 Cicer arietinum L. HOM05D001707 ORTHO05D001694 1.1e-21 108.6 124 61.3
Lalb_Chr10g0107401 Lupinus albus HOM05D001707 ORTHO05D001694 1.9e-21 107.8 128 60.9
Phvul.008G167500 Phaseolus vulgaris HOM05D008692 ORTHO05D011196 7.4e-21 105.9 201 38.3
TPR.G8609 Trifolium pratense HOM05D005718 ORTHO05D004853 1.3e-20 105.1 187 42.2
VMungo0647G1494 Vigna mungo HOM05D008692 ORTHO05D011196 1.6e-20 104.8 182 40.7
TPR.G8591 Trifolium pratense HOM05D005718 ORTHO05D004853 2.1e-20 104.4 189 41.8
Psat2g008360 Pisum sativum HOM05D008692 ORTHO05D011196 2.8e-20 104.0 216 38.9
Glyma.08G329100 Glycine max HOM05D001707 ORTHO05D001694 4.8e-20 103.2 154 57.8
Medtr5g095720 Medicago truncatula HOM05D001707 ORTHO05D001694 3.1e-19 100.5 155 56.8
QL08p004228 Quercus lobata HOM05D001707 ORTHO05D001694 3.1e-19 100.5 163 55.8
Ca_06382_v3 Cicer arietinum L. HOM05D008692 ORTHO05D011196 5.3e-19 99.8 234 38.0
Ca_29963_v3 Cicer arietinum L. HOM05D008692 ORTHO05D015071 5.3e-19 99.8 234 38.0
Glyma.18G077700 Glycine max HOM05D001707 ORTHO05D001694 5.3e-19 99.8 100 66.0
TPR.G8598 Trifolium pratense HOM05D005718 ORTHO05D004853 1.2e-18 98.6 223 38.6
VMungo0647G0491 Vigna mungo HOM05D009155 ORTHO05D004853 1.3e-17 95.1 225 36.0
Medtr5g095370 Medicago truncatula HOM05D008692 ORTHO05D011196 1.7e-17 94.7 232 37.1
Psat2g008400 Pisum sativum HOM05D008692 ORTHO05D011196 2.9e-17 94.0 194 39.2
VMungo0647G0384 Vigna mungo HOM05D008692 ORTHO05D011196 2.9e-17 94.0 221 37.1
arahy.Tifrunner.gnm1.ann1.706G3K Arachis hypogaea HOM05D001707 ORTHO05D001694 1.4e-16 91.7 100 59.0
VMungo0647G1912 Vigna mungo HOM05D008692 ORTHO05D011196 1.4e-16 91.7 181 40.3
Phvul.006G056800 Phaseolus vulgaris HOM05D001707 ORTHO05D001694 3.2e-16 90.5 100 64.0
Medtr5g094960 Medicago truncatula HOM05D008692 ORTHO05D015071 4.2e-16 90.1 168 42.3
Medtr5g094990 Medicago truncatula HOM05D008692 ORTHO05D015071 5.5e-16 89.7 165 42.4
Lalb_Chr15g0082041 Lupinus albus HOM05D001707 ORTHO05D001694 7.1e-16 89.4 152 51.3
VMungo0540G1466 Vigna mungo HOM05D001707 ORTHO05D001694 4.6e-15 86.7 100 62.0
Medtr5g095310 Medicago truncatula HOM05D005718 ORTHO05D004853 1.8e-14 84.7 150 41.3
Ciclev10007691m.g Citrus clementina HOM05D001707 ORTHO05D001694 2.3e-14 84.3 122 53.3
VMungo0647G1248 Vigna mungo HOM05D008692 ORTHO05D011196 2.3e-14 84.3 198 36.9
Medtr5g095400 Medicago truncatula HOM05D005718 ORTHO05D004853 5.1e-14 83.2 191 38.7
Lalb_Chr17g0348841 Lupinus albus HOM05D008692 ORTHO05D011196 2.5e-13 80.9 251 32.7
Glyma.14G015200 Glycine max HOM05D008692 ORTHO05D011196 5.7e-13 79.7 138 38.4
Medtr5g095430 Medicago truncatula HOM05D005718 ORTHO05D004853 5.7e-13 79.7 187 38.5
Manes.15G060500 Manihot esculenta HOM05D001707 ORTHO05D001694 9.6e-13 79.0 123 46.3
Psat2g007560 Pisum sativum HOM05D001707 ORTHO05D001694 1.3e-12 78.6 154 51.3
VMungo0540G1473 Vigna mungo HOM05D001707 ORTHO05D001694 1.6e-12 78.2 129 46.5
Phvul.008G277142 Phaseolus vulgaris HOM05D008692 ORTHO05D011196 2.1e-12 77.8 119 42.9
FAN16G3081 Fragaria x ananassa HOM05D001707 ORTHO05D001694 2.8e-12 77.4 154 46.8
Phvul.006G056900 Phaseolus vulgaris HOM05D001707 ORTHO05D001694 2.8e-12 77.4 130 46.9
Lalb_Chr04g0247871 Lupinus albus HOM05D001707 ORTHO05D001694 3.7e-12 77.0 118 51.7
Phvul.008G277400 Phaseolus vulgaris HOM05D008692 ORTHO05D011196 3.7e-12 77.0 220 32.3
Manes.03G140900 Manihot esculenta HOM05D001707 ORTHO05D001694 4.8e-12 76.6 156 47.4
Medtr5g094850 Medicago truncatula HOM05D008692 ORTHO05D015071 4.8e-12 76.6 206 34.5
arahy.Tifrunner.gnm1.ann1.A9Q4ZU Arachis hypogaea HOM05D001707 ORTHO05D001694 6.2e-12 76.3 96 52.1
Psat7g256720 Pisum sativum HOM05D008692 ORTHO05D011196 1.4e-11 75.1 138 44.9
Medtr5g094920 Medicago truncatula HOM05D008692 ORTHO05D015071 1.8e-11 74.7 211 35.1
TPR.G8600 Trifolium pratense HOM05D005718 ORTHO05D004853 2.4e-11 74.3 144 38.2
VMungo0647G2344 Vigna mungo HOM05D000176 ORTHO05D000106 2.4e-11 74.3 311 30.9
VMungo0647G1212 Vigna mungo HOM05D008692 ORTHO05D011196 6.9e-11 72.8 179 37.4
Medtr5g094950 Medicago truncatula HOM05D008692 ORTHO05D015071 9.0e-11 72.4 195 36.4
arahy.Tifrunner.gnm1.ann1.1YX8TX Arachis hypogaea HOM05D008692 ORTHO05D011196 1.5e-10 71.6 188 34.6
TWI38G1767 Tripterygium wilfordii HOM05D001707 ORTHO05D001694 1.7e-09 68.2 154 49.4
arahy.Tifrunner.gnm1.ann1.R1C8VV Arachis hypogaea HOM05D008692 ORTHO05D011196 5.0e-09 66.6 205 32.2
MELO3C014102.2 Cucumis melo HOM05D001707 ORTHO05D001694 5.0e-09 66.6 154 48.1
RcHm_v2.0_Chr5g0053741 Rosa chinensis HOM05D001707 ORTHO05D001694 5.0e-09 66.6 76 57.9
MD11G1200600 Malus domestica HOM05D001707 ORTHO05D001694 6.5e-09 66.2 76 59.2
arahy.Tifrunner.gnm1.ann1.JWE1IW Arachis hypogaea HOM05D017804 ORTHO05D011196 8.4e-09 65.9 177 33.3
CiPaw.11G203300 Carya illinoinensis HOM05D001707 ORTHO05D001694 2.5e-08 64.3 106 46.2
FAN25G3697 Fragaria x ananassa HOM05D001707 ORTHO05D001694 2.5e-08 64.3 94 51.1
Glyma.08G329200 Glycine max HOM05D001707 ORTHO05D001694 2.5e-08 64.3 155 41.3
TPR.G14169 Trifolium pratense HOM05D008692 ORTHO05D015071 3.2e-08 63.9 151 37.7
Cpa.g.sc12.152 Carica papaya HOM05D001707 ORTHO05D001694 4.2e-08 63.5 157 46.5
FvH4_3g29362 Fragaria vesca HOM05D001707 ORTHO05D001694 4.2e-08 63.5 112 43.8
FAN21G0111 Fragaria x ananassa HOM05D001707 ORTHO05D001694 7.1e-08 62.8 132 43.9
Hma1.2p1_1559F.1_g290640 Hydrangea macrophylla HOM05D001707 ORTHO05D001694 9.3e-08 62.4 101 45.5
Medtr3g058970 Medicago truncatula HOM05D001707 ORTHO05D001694 9.3e-08 62.4 159 38.4
PGR083G0672 Punica granatum HOM05D001707 ORTHO05D001694 1.2e-07 62.0 160 45.0
Medtr5g095390 Medicago truncatula HOM05D008692 ORTHO05D015071 3.5e-07 60.5 262 32.4
TWI38G0208 Tripterygium wilfordii HOM05D001707 ORTHO05D001694 3.5e-07 60.5 105 48.6
Ah.06g181390 Amaranthus hybridus HOM05D001707 ORTHO05D001694 4.6e-07 60.1 146 33.6
FAN11G4026 Fragaria x ananassa HOM05D001707 ORTHO05D001694 4.6e-07 60.1 111 40.5
Glyma.18G077600 Glycine max HOM05D001707 ORTHO05D001694 6.1e-07 59.7 208 41.3
Psat2g009200 Pisum sativum HOM05D008692 ORTHO05D015071 6.1e-07 59.7 204 32.4
Psat5g168800 Pisum sativum HOM05D001707 ORTHO05D001694 6.1e-07 59.7 102 47.1
CANSAT21G1170 Cannabis sativa HOM05D030939 ORTHO05D028422 1.3e-06 58.5 159 29.6
Solyc07g065490.3 Solanum lycopersicum HOM05D001707 ORTHO05D001694 1.3e-06 58.5 114 43.0
Sopen07g033700 Solanum pennellii HOM05D001707 ORTHO05D001694 1.3e-06 58.5 114 43.0
CSS0002645 Camellia sinensis var. sinensis HOM05D001707 ORTHO05D001694 3.0e-06 57.4 75 50.7
CiPaw.12G137800 Carya illinoinensis HOM05D001707 ORTHO05D001694 3.0e-06 57.4 109 41.3
TAR629G2834 Trochodendron aralioides HOM05D001707 ORTHO05D001694 3.0e-06 57.4 80 47.5
Dinv40853 Davidia involucrata HOM05D001707 ORTHO05D001694 5.1e-06 56.6 65 53.8
Lalb_Chr20g0113971 Lupinus albus HOM05D012393 ORTHO05D014595 6.7e-06 56.2 196 32.1
Sabra16G0240600 Salix brachista HOM05D001707 ORTHO05D001694 6.7e-06 56.2 157 45.2


User provided reference genes

Program Settings