Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 2.8e-165 586.6 519 100.0
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 1.1e-60 239.2 455 47.3
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 5.4e-52 210.3 416 48.6
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 9.2e-52 209.5 178 57.3
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 2.1e-48 198.4 175 60.0
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 1.1e-47 196.1 404 50.2
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 1.7e-45 188.7 405 44.2
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 4.1e-44 184.1 136 64.7
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 7.1e-44 183.3 405 60.2
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 1.2e-43 182.6 402 43.5
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 1.6e-43 182.2 284 36.6
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 3.5e-43 181.0 142 62.7
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 7.8e-43 179.9 404 60.9
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 2.3e-42 178.3 181 52.5
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 3.9e-42 177.6 405 43.5
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 8.6e-42 176.4 127 65.4
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 2.5e-41 174.9 131 67.9
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 2.8e-40 171.4 132 64.4
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 2.4e-39 168.3 184 52.2
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 1.9e-36 158.7 128 57.8
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 5.4e-36 157.1 130 56.2
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 4.6e-35 154.1 411 39.7
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 6.6e-34 150.2 162 46.3
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 8.7e-34 149.8 151 47.7
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 1.5e-33 149.1 136 52.2
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 1.5e-33 149.1 405 58.5
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 1.6e-32 145.6 136 52.2
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 4.8e-32 144.1 137 47.4
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 1.5e-30 139.0 427 41.0
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 1.4e-28 132.5 128 46.9
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 1.9e-28 132.1 129 46.5
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 9.3e-28 129.8 126 46.8
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 2.1e-27 128.6 417 43.9
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 4.6e-27 127.5 144 43.1
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 1.0e-26 126.3 402 58.5
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 1.7e-26 125.6 294 39.5
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 5.1e-26 124.0 403 44.9
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 1.1e-25 122.9 403 48.9
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 1.5e-25 122.5 416 44.2
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 1.5e-25 122.5 138 42.8
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 3.3e-25 121.3 156 39.7
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 4.3e-25 120.9 167 44.3
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 5.6e-25 120.6 133 41.4
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 7.4e-25 120.2 127 44.9
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 1.6e-24 119.0 138 39.9
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 2.1e-24 118.6 418 38.0
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 8.1e-24 116.7 160 38.1
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 1.1e-23 116.3 158 40.5
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 1.8e-23 115.5 438 36.8
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 5.3e-23 114.0 130 40.8
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 1.5e-22 112.5 302 27.8
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 1.5e-22 112.5 121 37.2
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 9.9e-22 109.8 138 42.0
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 1.3e-21 109.4 404 56.9
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 2.9e-21 108.2 387 38.5
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 4.2e-20 104.4 125 43.2
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 7.1e-20 103.6 126 41.3
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 2.1e-19 102.1 141 38.3
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 2.7e-19 101.7 130 36.2
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 4.6e-19 100.9 143 35.0
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 4.6e-19 100.9 134 34.3
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 7.9e-19 100.1 130 36.2
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 1.8e-18 99.0 129 37.2
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 1.8e-18 99.0 134 33.6
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 2.3e-18 98.6 135 37.0
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 2.3e-18 98.6 517 21.9
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 3.9e-18 97.8 127 37.0
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 3.9e-18 97.8 130 36.2
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 2.5e-17 95.1 152 34.2
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 3.3e-17 94.7 125 35.2
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 9.6e-17 93.2 124 41.1
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 9.6e-17 93.2 139 33.8
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 2.1e-16 92.0 157 35.0
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 2.8e-16 91.7 256 26.2
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 2.8e-16 91.7 256 26.2
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 4.8e-16 90.9 149 40.9
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 4.8e-16 90.9 149 40.9
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 6.2e-16 90.5 140 33.6
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 8.1e-16 90.1 438 28.8
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 1.1e-15 89.7 166 34.3
FAN08G1130 Fragaria x ananassa HOM05D006287 ORTHO05D008192 2.4e-15 88.6 182 45.1
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 3.1e-15 88.2 78 51.3
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 6.9e-15 87.0 127 33.1
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 9.0e-15 86.7 141 37.6
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.2e-14 86.3 299 32.4
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 2.0e-14 85.5 259 42.1
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 5.8e-14 84.0 129 33.3
Gohir.A10G099700 Gossypium hirsutum HOM05D006287 ORTHO05D008192 2.2e-13 82.0 202 65.8
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 8.4e-13 80.1 139 36.7
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 8.4e-13 80.1 126 35.7
CAN.G1030.28 Capsicum annuum HOM05D006287 ORTHO05D008192 1.9e-12 79.0 51 68.6
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 1.9e-12 79.0 166 33.1
EL10Ac3g05636 Beta vulgaris HOM05D006287 ORTHO05D008192 3.2e-12 78.2 191 55.5
ATR0782G035 Amborella trichopoda HOM05D006287 ORTHO05D008192 2.7e-11 75.1 181 29.3
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 4.6e-11 74.3 129 31.0
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 4.6e-11 74.3 100 36.0
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 2.3e-10 72.0 78 46.2
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 3.0e-10 71.6 182 28.0
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 5.1e-10 70.9 129 28.7
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 5.1e-10 70.9 119 31.1
Manes.03G017400 Manihot esculenta HOM05D006287 ORTHO05D008192 6.7e-10 70.5 68 51.5
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 8.7e-10 70.1 73 35.6
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 3.3e-09 68.2 128 27.3
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.3e-08 66.2 127 29.1
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 8.2e-08 63.5 134 32.8
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 2.4e-07 62.0 74 43.2
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 3.1e-07 61.6 135 31.1
MBI01_g07128_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 2.0e-06 58.9 39 61.5
Os01g0611900 Oryza sativa ssp. japonica HOM05D006287 ORTHO05D008192 2.0e-06 58.9 181 63.5
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 2.6e-06 58.5 75 42.7
MELO3C018417.2 Cucumis melo HOM05D007083 ORTHO05D008801 1.0e-05 56.6 121 31.4


User provided reference genes

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