Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.3e-213 746.1 378 100.0
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 8.2e-184 647.1 365 88.5
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.7e-181 639.4 377 87.8
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 3.8e-181 638.3 363 88.4
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.2e-179 633.3 373 86.6
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 3.6e-179 631.7 369 86.2
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 8.8e-178 627.1 384 85.4
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.1e-175 620.2 376 84.0
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.6e-174 616.3 372 85.2
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 9.8e-169 597.0 360 82.8
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 9.8e-161 570.5 357 80.4
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.1e-159 567.0 353 81.6
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.4e-159 566.6 348 81.0
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 1.8e-159 566.2 352 79.8
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 2.7e-158 562.4 352 80.1
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 4.6e-158 561.6 348 81.0
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 1.0e-157 560.5 352 80.4
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.3e-157 560.1 353 79.9
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.3e-157 559.3 352 80.1
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 5.0e-157 558.1 357 78.2
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.1e-155 552.7 353 78.8
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 3.6e-155 552.0 348 78.4
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 4.7e-155 551.6 352 78.4
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 6.2e-155 551.2 352 77.8
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 6.8e-154 547.7 352 77.8
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 6.8e-154 547.7 352 77.8
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 6.8e-154 547.7 353 78.2
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.5e-153 546.6 352 77.6
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.2e-152 542.7 347 76.9
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 2.9e-152 542.3 348 78.4
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 2.9e-152 542.3 348 77.9
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 3.7e-152 542.0 348 79.0
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.9e-151 539.7 356 74.4
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.9e-151 539.7 348 76.1
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.9e-151 539.7 348 76.1
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.2e-151 538.9 347 78.1
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 1.2e-150 537.0 347 76.9
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.6e-150 536.6 349 77.7
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 2.7e-150 535.8 348 77.9
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.3e-149 533.5 330 80.9
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 2.5e-148 529.3 366 73.2
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 3.3e-148 528.9 351 74.9
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 9.5e-148 527.3 322 81.4
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 9.5e-148 527.3 359 74.1
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 9.5e-148 527.3 354 73.7
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.7e-147 525.0 360 73.1
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 6.2e-147 524.6 386 70.2
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.1e-146 523.9 356 73.9
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 1.8e-146 523.1 349 73.9
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 5.2e-146 521.5 349 73.6
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.2e-145 520.4 353 73.7
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 1.5e-145 520.0 353 74.5
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 2.0e-145 519.6 350 74.3
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 2.6e-145 519.2 332 78.3
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 9.8e-145 517.3 355 73.0
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.3e-144 516.9 347 73.2
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.2e-144 516.2 353 73.4
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 6.4e-144 514.6 370 71.6
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.9e-143 513.1 310 82.9
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.9e-143 513.1 350 74.9
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.2e-143 512.3 353 72.2
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 5.4e-143 511.5 380 69.5
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 2.1e-142 509.6 329 76.6
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.0e-141 507.3 354 72.0
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.9e-141 505.4 352 71.3
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 5.1e-141 505.0 350 72.3
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.1e-140 503.8 354 70.9
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.5e-140 503.4 362 70.2
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 9.5e-140 500.7 347 73.5
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.2e-139 500.4 337 73.6
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.6e-139 500.0 408 64.5
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.6e-139 498.8 333 75.4
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 4.7e-139 498.4 329 73.6
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 6.2e-139 498.0 348 72.7
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.1e-138 495.7 350 71.4
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 3.4e-137 492.3 328 73.8
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 7.6e-137 491.1 351 70.1
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 2.2e-136 489.6 366 68.6
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 7.1e-135 484.6 348 70.1
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 1.2e-134 483.8 331 72.8
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 3.5e-134 482.3 325 72.6
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 3.5e-134 482.3 325 71.4
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.3e-133 480.3 328 73.2
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 6.6e-133 478.0 348 70.1
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 5.6e-132 474.9 325 71.7
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.2e-131 473.8 351 70.1
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 2.8e-131 472.6 329 70.5
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 3.6e-131 472.2 338 71.9
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.6e-131 472.2 336 70.5
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 4.7e-131 471.9 331 69.5
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 8.1e-131 471.1 328 70.7
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 8.1e-131 471.1 357 65.8
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 3.1e-130 469.2 342 66.7
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 4.0e-130 468.8 335 68.4
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 4.0e-130 468.8 349 68.2
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 8.9e-130 467.6 329 70.8
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.2e-129 467.2 329 70.5
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 2.0e-129 466.5 327 68.8
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 2.6e-129 466.1 326 69.6
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 5.8e-129 464.9 343 66.5
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 7.6e-129 464.5 343 66.5
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.7e-128 463.4 329 70.5
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.7e-128 463.4 324 69.1
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 2.2e-128 463.0 344 66.6
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 2.2e-128 463.0 365 65.8
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.2e-128 463.0 331 69.5
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 2.9e-128 462.6 350 66.0
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 8.4e-128 461.1 365 63.8
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 1.4e-127 460.3 326 69.0
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 1.4e-127 460.3 324 68.8
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 1.9e-127 459.9 326 68.7
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 2.4e-127 459.5 325 68.6
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 4.2e-127 458.8 329 70.2
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 1.6e-126 456.8 326 68.7
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 3.5e-126 455.7 331 68.6
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 1.7e-125 453.4 268 85.1
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 3.0e-125 452.6 349 66.8
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 6.6e-125 451.4 324 67.9
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.1e-124 450.7 312 71.2
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 5.6e-124 448.4 351 64.4
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 9.6e-124 447.6 268 82.1
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.3e-123 447.2 321 67.9
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 1.3e-123 447.2 337 66.5
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 5.3e-122 441.8 314 69.7
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 6.9e-122 441.4 326 68.1
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 9.9e-121 437.6 353 64.3
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.0e-117 427.6 276 79.3
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 9.6e-116 421.0 329 64.4
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 5.8e-113 411.8 290 74.1
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 2.9e-112 409.5 532 45.3
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 3.7e-99 365.9 329 58.4
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.8e-98 363.6 334 55.4
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 3.1e-98 362.8 345 55.4
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 3.2e-95 352.8 226 77.4
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 2.9e-88 329.7 279 62.4
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 1.1e-87 327.8 297 56.6
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 1.9e-87 327.0 243 65.4
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 6.1e-86 322.0 206 77.7
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 6.7e-85 318.5 231 68.8
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 3.7e-83 312.8 235 68.1
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 5.3e-82 308.9 267 61.0
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 3.4e-81 306.2 202 75.7
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 5.2e-77 292.4 188 78.2
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 2.2e-75 287.0 162 87.7
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 5.3e-66 255.8 371 41.0
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.6e-62 244.2 190 62.1
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.8e-61 240.7 200 63.0
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.8e-59 233.4 164 70.1
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 1.1e-58 231.5 188 64.4
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.4e-58 230.3 161 68.9
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 2.7e-57 226.9 211 56.4
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 9.8e-52 208.4 271 45.8
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 1.8e-50 204.1 145 69.0
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 1.8e-45 187.6 329 38.3
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 5.9e-41 172.6 115 75.7
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 9.5e-31 138.7 274 33.2
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 4.0e-29 133.3 392 31.4
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 4.0e-29 133.3 289 33.9
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 6.4e-27 125.9 155 46.5
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 3.0e-24 117.1 71 80.3
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.4e-21 107.5 215 34.4
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 3.1e-21 107.1 66 75.8
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.7e-19 101.3 63 73.0
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.9e-19 99.8 60 85.0
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 7.8e-17 92.4 57 75.4
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 2.1e-14 84.3 84 51.2
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 1.1e-13 82.0 62 69.4
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 5.8e-12 76.3 79 53.2
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.6e-09 68.2 54 61.1
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 1.6e-06 58.2 57 54.4
Cfa023540 Carpinus fangiana HOM05D000112 ORTHO05D001327 8.1e-06 55.8 35 68.6


User provided reference genes

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