Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 6.3e-106 387.5 201 100.0
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 2.0e-83 312.8 199 77.9
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.1e-78 297.0 191 77.0
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.6e-77 292.0 191 75.4
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.6e-75 285.8 191 73.8
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.4e-73 280.0 196 71.9
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 1.3e-71 273.5 195 68.7
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 1.7e-71 273.1 198 67.7
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 5.0e-71 271.6 196 67.3
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 1.9e-70 269.6 201 67.2
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 2.5e-70 269.2 188 70.7
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 3.2e-70 268.9 196 67.3
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 1.6e-69 266.5 194 68.0
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 8.0e-69 264.2 198 67.2
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 1.0e-68 263.8 195 66.2
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.4e-68 263.5 191 70.2
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 1.8e-68 263.1 199 68.8
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 1.8e-68 263.1 200 64.0
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 1.8e-68 263.1 200 63.0
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 1.2e-67 260.4 199 68.3
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.2e-67 260.4 196 65.8
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 2.0e-67 259.6 200 63.0
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 3.4e-67 258.8 191 64.4
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 3.4e-67 258.8 199 63.8
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 5.7e-67 258.1 196 66.8
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 7.5e-67 257.7 198 65.2
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 7.5e-67 257.7 198 65.2
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 2.8e-66 255.8 198 62.6
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 6.3e-66 254.6 198 63.1
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 8.3e-66 254.2 193 65.8
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.4e-65 252.7 193 64.2
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 4.1e-65 251.9 189 65.6
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 4.1e-65 251.9 196 62.8
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 1.2e-64 250.4 196 64.8
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 2.0e-64 249.6 191 63.9
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.5e-64 248.8 193 62.7
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 5.9e-64 248.1 201 63.2
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 7.7e-64 247.7 189 65.1
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.3e-63 246.9 195 62.6
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.3e-63 246.9 192 63.0
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.6e-63 244.6 191 62.8
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 8.6e-63 244.2 198 60.6
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 3.3e-62 242.3 201 61.7
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 3.3e-62 242.3 195 60.0
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 4.2e-62 241.9 195 58.5
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 5.5e-62 241.5 194 60.3
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 7.2e-62 241.1 195 58.5
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 7.2e-62 241.1 198 61.1
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 7.2e-62 241.1 195 61.0
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 9.5e-62 240.7 199 60.8
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 9.5e-62 240.7 198 59.6
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 9.5e-62 240.7 192 62.0
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.2e-61 240.4 198 59.1
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.6e-61 240.0 191 61.8
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.6e-61 240.0 195 61.0
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 1.6e-61 240.0 195 59.0
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.1e-61 239.6 199 60.8
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 2.8e-61 239.2 199 60.8
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 3.6e-61 238.8 198 60.6
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 4.7e-61 238.4 185 63.8
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 6.1e-61 238.0 245 51.0
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 8.0e-61 237.7 192 61.5
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 1.0e-60 237.3 201 58.7
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.8e-60 236.5 198 60.1
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 4.0e-60 235.3 198 60.6
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 4.0e-60 235.3 192 60.4
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 5.2e-60 235.0 198 58.6
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 6.8e-60 234.6 195 60.5
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 6.8e-60 234.6 195 57.4
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 8.9e-60 234.2 196 59.7
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 1.2e-59 233.8 195 55.9
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 1.2e-59 233.8 192 59.9
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.5e-59 233.4 195 56.4
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.5e-59 233.4 198 60.6
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.0e-59 233.0 195 59.0
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.6e-59 232.6 195 58.5
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 3.4e-59 232.3 195 58.5
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 3.4e-59 232.3 192 59.4
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 4.4e-59 231.9 197 62.4
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 7.5e-59 231.1 195 57.9
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 7.5e-59 231.1 195 56.9
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 9.8e-59 230.7 198 56.1
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 3.7e-58 228.8 198 56.1
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 3.7e-58 228.8 174 64.4
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 4.9e-58 228.4 198 58.1
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 6.3e-58 228.0 187 57.2
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 6.3e-58 228.0 198 58.6
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 6.3e-58 228.0 198 59.6
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-57 227.3 198 57.1
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 1.4e-57 226.9 198 58.1
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 1.8e-57 226.5 198 57.6
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 2.4e-57 226.1 198 57.6
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 3.1e-57 225.7 199 58.8
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.1e-57 225.3 198 58.1
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 5.4e-57 224.9 149 71.1
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 7.0e-57 224.6 198 57.1
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 7.0e-57 224.6 197 54.8
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 1.6e-56 223.4 198 57.1
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 2.0e-56 223.0 200 55.5
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 5.9e-56 221.5 199 57.3
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.7e-55 219.9 191 57.6
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 5.0e-55 218.4 193 58.5
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.6e-55 218.0 193 55.4
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 6.6e-55 218.0 203 56.7
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 6.6e-55 218.0 198 57.1
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 6.6e-55 218.0 198 58.1
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 8.6e-55 217.6 191 57.1
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 1.5e-54 216.9 202 55.4
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.5e-54 216.9 198 55.6
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 1.9e-54 216.5 198 57.6
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.9e-54 216.5 196 56.1
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 2.5e-54 216.1 194 54.1
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 5.6e-54 214.9 187 56.7
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 7.3e-54 214.5 195 52.8
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 9.5e-54 214.2 195 56.4
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 9.5e-54 214.2 194 53.6
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.1e-53 213.0 187 57.2
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.8e-53 212.6 178 62.4
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 1.0e-52 210.7 177 59.9
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.0e-52 210.7 187 57.8
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 6.8e-52 208.0 181 56.4
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 1.5e-51 206.8 194 50.0
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.4e-51 205.7 195 53.3
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 4.4e-51 205.3 194 50.0
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 5.8e-51 204.9 194 53.6
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 2.2e-50 203.0 195 52.8
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 2.9e-50 202.6 194 49.0
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 3.7e-50 202.2 189 48.7
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.1e-49 200.7 177 58.2
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.4e-49 200.3 193 47.7
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 3.2e-49 199.1 193 47.2
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 3.2e-49 199.1 174 58.0
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 1.2e-48 197.2 194 47.9
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 6.0e-48 194.9 193 46.6
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 1.0e-47 194.1 193 46.6
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.3e-47 193.7 189 50.8
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 8.6e-47 191.0 144 62.5
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 3.3e-46 189.1 191 50.3
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 4.3e-46 188.7 166 54.8
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 2.3e-44 183.0 195 49.7
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 4.0e-44 182.2 170 56.5
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 1.3e-42 177.2 199 47.7
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.2e-42 176.4 189 46.0
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 2.9e-42 176.0 190 45.3
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.7e-42 175.6 198 46.0
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 8.3e-42 174.5 195 46.7
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 3.2e-41 172.6 193 43.0
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 9.2e-41 171.0 163 50.9
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.2e-40 170.6 128 65.6
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.1e-40 169.9 158 57.6
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 3.5e-40 169.1 196 47.4
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 5.6e-38 161.8 145 53.1
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 5.6e-38 161.8 189 42.9
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 7.3e-38 161.4 126 58.7
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 7.3e-38 161.4 165 49.1
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 9.5e-38 161.0 195 43.1
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 4.7e-37 158.7 195 43.1
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 6.2e-37 158.3 198 43.9
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 5.2e-36 155.2 157 47.1
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 7.5e-35 151.4 193 43.5
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.3e-34 150.6 130 53.1
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 7.1e-33 144.8 153 52.3
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 3.1e-28 129.4 113 54.0
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.4e-25 120.6 194 39.7
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.3e-23 113.2 195 38.5
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 4.7e-21 105.5 185 38.9
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 1.4e-20 104.0 112 52.7
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 2.4e-17 93.2 83 59.0
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 7.1e-17 91.7 105 45.7
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 7.1e-17 91.7 201 32.8
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 1.6e-16 90.5 210 29.5
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 1.9e-14 83.6 198 28.3
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 4.3e-14 82.4 165 32.1
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 6.2e-13 78.6 178 30.3
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 4.0e-12 75.9 76 47.4
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 1.2e-08 64.3 147 29.3
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.3e-07 60.1 95 40.0
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 5.1e-07 58.9 81 43.2


User provided reference genes

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