Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 2263.0 1056 100.0
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1685.2 1162 68.6
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1582.4 1165 64.3
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1578.5 1165 64.2
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1576.6 1165 63.9
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1576.2 1165 64.8
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1573.5 1165 64.0
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1572.8 1162 64.9
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1570.4 1165 63.6
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1568.5 1160 63.8
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1567.4 1165 63.8
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1566.2 1160 64.7
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1564.7 1160 64.5
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1561.6 1118 67.2
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1560.4 1159 63.7
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1560.0 1164 64.2
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1558.9 1160 63.2
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1553.1 1162 63.3
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1550.8 1115 66.8
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1547.7 1149 64.7
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1546.2 1129 66.1
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1543.5 1165 62.8
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1542.7 1161 63.2
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1542.3 1168 64.0
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1535.0 1163 62.9
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1530.4 1131 65.3
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1528.8 1166 63.0
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1528.1 1161 63.4
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1525.8 1162 62.2
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1521.1 1172 62.2
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1519.6 1158 62.2
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1515.7 1168 61.6
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1513.0 1167 61.7
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1510.4 1164 62.2
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1510.0 1167 62.0
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1508.4 1167 61.8
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1508.0 1094 65.7
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1507.3 1140 63.6
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1506.9 1171 62.2
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1500.0 1164 61.3
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1492.2 1149 61.6
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1488.8 1163 61.0
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1487.6 1157 61.3
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1486.5 1161 60.8
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1486.1 1158 61.0
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1485.3 1156 61.2
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1485.3 1161 61.2
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1483.8 1156 61.2
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1483.8 1165 61.1
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1483.4 1156 60.6
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1483.4 1165 60.5
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1483.4 1157 60.8
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1482.6 1168 61.1
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1480.7 1165 60.4
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1480.3 1162 61.3
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1479.2 1165 61.0
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1478.4 1157 60.8
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1477.6 1159 61.2
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1477.2 1156 61.0
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1474.5 1155 60.9
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1474.1 1165 60.0
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1473.8 1273 58.0
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1473.0 1150 60.9
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1470.7 1152 60.9
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1466.1 1165 59.9
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1463.4 1141 61.8
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1462.6 1155 60.0
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1461.8 1160 60.4
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1459.9 1164 59.7
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1458.0 1150 60.7
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1457.6 1157 60.1
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1457.2 1153 59.8
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1456.0 1153 59.8
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1455.3 1173 59.8
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1453.7 1166 59.9
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1445.3 1158 61.6
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1434.9 1155 60.3
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1422.1 1117 60.9
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1409.4 1170 58.5
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1406.0 1145 58.8
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1389.0 1149 57.7
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1380.5 1041 63.9
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1377.8 1166 56.8
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1362.4 1169 56.1
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1337.0 1042 62.1
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1307.7 1128 55.8
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1238.0 941 62.6
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1222.6 948 62.4
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1182.5 1154 50.1
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1182.2 1180 48.5
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1148.3 1155 49.2
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1145.6 1066 54.4
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1106.7 831 63.4
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 0.0e+00 1077.8 718 70.2
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 7.2e-312 1073.9 833 61.7
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 1.0e-308 1063.5 751 67.1
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 2.5e-307 1058.9 1163 45.9
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 1.1e-294 1016.9 755 64.1
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 1.5e-291 1006.5 740 63.6
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 1.1e-270 937.2 1175 42.3
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 6.8e-252 874.8 1069 44.4
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 1.9e-233 813.5 549 71.4
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 2.7e-232 809.7 689 57.2
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 2.8e-205 719.9 569 60.8
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 6.9e-204 715.3 569 60.8
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.2e-168 598.2 533 55.3
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 8.8e-151 538.9 435 61.1
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 1.5e-150 538.1 1522 27.7
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 8.6e-146 522.3 647 43.6
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 1.5e-134 485.0 310 73.5
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 2.6e-110 404.4 270 70.4
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.6e-107 395.2 298 66.8
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 6.0e-107 393.3 624 38.0
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 1.8e-90 338.6 196 75.5
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 1.0e-82 312.8 259 56.4
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 3.0e-82 311.2 175 81.7
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 8.7e-82 309.7 199 70.4
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 7.4e-73 280.0 433 39.7
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.9e-68 265.4 158 75.9
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 2.2e-56 225.3 131 74.0
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 4.1e-55 221.1 132 74.2
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 2.2e-53 215.3 188 59.0
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 5.7e-49 200.7 123 70.7
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 4.0e-42 177.9 124 66.1
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 4.2e-36 157.9 144 52.8
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 6.1e-35 154.1 166 48.2
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 6.1e-35 154.1 105 60.0
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 1.0e-34 153.3 134 54.5
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 2.3e-34 152.1 138 51.4
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 3.0e-34 151.8 135 54.1
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 1.7e-32 146.0 137 51.8
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 2.8e-32 145.2 82 76.8
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 5.0e-29 134.4 89 67.4
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.2e-27 129.8 100 62.0
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 2.6e-25 122.1 161 46.0
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 7.5e-25 120.6 68 70.6
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 4.9e-24 117.9 67 73.1
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 2.4e-23 115.5 53 92.5
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 1.7e-21 109.4 110 55.5
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 4.0e-18 98.2 102 44.1
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 7.5e-17 94.0 45 80.0
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 7.5e-17 94.0 45 80.0
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 9.8e-17 93.6 45 80.0
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 4.9e-16 91.3 45 80.0
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 4.9e-16 91.3 88 50.0
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 4.9e-16 91.3 101 47.5
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 4.1e-15 88.2 45 75.6
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 5.4e-15 87.8 51 72.5
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 2.5e-12 79.0 157 36.9
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 3.6e-11 75.1 56 57.1
Lsat_1_v5_gn_5_181001 Lactuca sativa HOM05D005112 ORTHO05D006681 2.4e-07 62.4 90 40.0
CSS0027518 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D111919 3.2e-07 62.0 38 73.7


User provided reference genes

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