Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C641T18 Lonicera japonica HOM05D002214 ORTHO05D007367 2.7e-80 302.0 156 100.0
Hma1.2p1_0685F.1_g203250 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 1.2e-19 100.5 96 53.1
Hma1.2p1_0685F.1_g203260 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 1.2e-19 100.5 96 53.1
vmacro13697 Vaccinium macrocarpon HOM05D002214 ORTHO05D007367 3.8e-18 95.5 108 51.9
CSS0000146 Camellia sinensis var. sinensis HOM05D002214 ORTHO05D007367 6.5e-18 94.7 109 52.3
Rhsim07G0058900 Rhododendron simsii HOM05D002214 ORTHO05D007367 2.5e-17 92.8 108 47.2
SalBow6G2835 Salvia bowleyana HOM05D002214 ORTHO05D007367 1.2e-16 90.5 111 44.1
Oeu051405.1 Olea europaea HOM05D002214 ORTHO05D007367 2.1e-16 89.7 109 46.8
HanXRQChr04g0119861 Helianthus annuus HOM05D002214 ORTHO05D007367 1.0e-15 87.4 104 47.1
Cc02_g28820 Coffea canephora HOM05D002214 ORTHO05D007367 1.4e-15 87.0 100 48.0
Migut.N01800 Erythranthe guttata HOM05D002214 ORTHO05D007367 2.3e-15 86.3 98 50.0
SGA_v2.0_scaffold5G02954 Striga asiatica HOM05D002214 ORTHO05D007367 2.3e-15 86.3 113 40.7
QL04p010195 Quercus lobata HOM05D002214 ORTHO05D007367 3.0e-15 85.9 93 50.5
TWI09G0406 Tripterygium wilfordii HOM05D002214 ORTHO05D007367 5.2e-15 85.1 111 46.8
CiPaw.14G003400 Carya illinoinensis HOM05D002214 ORTHO05D007367 1.1e-14 84.0 82 53.7
Ciclev10031605m.g Citrus clementina HOM05D002214 ORTHO05D007367 2.0e-14 83.2 109 43.1
Actinidia19424 Actinidia chinensis HOM05D002214 ORTHO05D007367 2.6e-14 82.8 108 46.3
Hund16632 Selenicereus undatus HOM05D002214 ORTHO05D007367 3.7e-13 79.0 93 49.5
Prupe.2G024000 Prunus persica HOM05D002214 ORTHO05D007367 4.8e-13 78.6 97 49.5
Manes.07G010800 Manihot esculenta HOM05D002214 ORTHO05D007367 8.2e-13 77.8 85 51.8
Haze_03149 Corylus avellana HOM05D002214 ORTHO05D007367 1.8e-12 76.6 87 48.3
Haze_03152 Corylus avellana HOM05D002214 ORTHO05D007367 1.8e-12 76.6 87 48.3
ECA236G0637 Erigeron canadensis HOM05D002214 ORTHO05D001664 3.1e-12 75.9 104 42.3
CANSAT80G0536 Cannabis sativa HOM05D002214 ORTHO05D007367 5.3e-12 75.1 85 50.6
DCAR_022375 Daucus carota HOM05D002214 ORTHO05D007367 5.3e-12 75.1 106 43.4
CAN.G909.6 Capsicum annuum HOM05D002214 ORTHO05D007367 7.0e-12 74.7 86 52.3
Lsat_1_v5_gn_7_35840 Lactuca sativa HOM05D002214 ORTHO05D007367 7.0e-12 74.7 104 45.2
Nitab4.5_0008942g0050 Nicotiana tabacum HOM05D002214 ORTHO05D007367 7.0e-12 74.7 107 45.8
RcHm_v2.0_Chr1g0318361 Rosa chinensis HOM05D002214 ORTHO05D007367 9.1e-12 74.3 94 47.9
Sc11g0009040 Simmondsia chinensis HOM05D002214 ORTHO05D007367 9.1e-12 74.3 88 45.5
MBI03_g28525_MAGBIO Magnolia biondii HOM05D002214 ORTHO05D007367 1.2e-11 73.9 97 48.5
Potri.009G056500 Populus trichocarpa HOM05D002214 ORTHO05D007367 1.2e-11 73.9 92 47.8
Solyc01g087910.4 Solanum lycopersicum HOM05D002214 ORTHO05D007367 1.6e-11 73.6 96 45.8
Sopen01g034840 Solanum pennellii HOM05D002214 ORTHO05D007367 1.6e-11 73.6 96 45.8
Cfa010812 Carpinus fangiana HOM05D002214 ORTHO05D007367 2.0e-11 73.2 107 42.1
GSVIVG01032215001 Vitis vinifera HOM05D002214 ORTHO05D007367 4.5e-11 72.0 107 43.9
AUR62009418 Chenopodium quinoa HOM05D002214 ORTHO05D007367 5.9e-11 71.6 92 42.4
AUR62023095 Chenopodium quinoa HOM05D002214 ORTHO05D007367 5.9e-11 71.6 92 42.4
FAN10G2270 Fragaria x ananassa HOM05D002214 ORTHO05D007367 5.9e-11 71.6 97 41.2
Nn7g36334 Nelumbo nucifera HOM05D002214 ORTHO05D007367 7.7e-11 71.2 87 47.1
Gorai.004G170100 Gossypium raimondii HOM05D002214 ORTHO05D007367 1.3e-10 70.5 85 43.5
Cpa.g.sc125.51 Carica papaya HOM05D002214 ORTHO05D007367 2.2e-10 69.7 104 41.3
MD07G1023200 Malus domestica HOM05D002214 ORTHO05D007367 2.2e-10 69.7 87 47.1
Gohir.A08G142300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 2.9e-10 69.3 85 43.5
Sp5g10260 Schrenkiella parvula HOM05D002214 ORTHO05D007367 8.5e-10 67.8 87 41.4
FAN03G2729 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.5e-09 67.0 97 40.2
CsaV3_7G030710 Cucumis sativus L. HOM05D002214 ORTHO05D007367 1.9e-09 66.6 101 42.6
EL10Ac2g04369 Beta vulgaris HOM05D002214 ORTHO05D007367 2.5e-09 66.2 92 39.1
Duzib138G1340 Durio zibethinus HOM05D002214 ORTHO05D007367 4.2e-09 65.5 82 43.9
BcaC06g33377 Brassica carinata HOM05D002214 ORTHO05D007367 5.5e-09 65.1 90 42.2
A03p48610 Brassica napus HOM05D002214 ORTHO05D007367 5.5e-09 65.1 90 42.2
Sed0008197 Sechium edule HOM05D002214 ORTHO05D007367 5.5e-09 65.1 86 46.5
Thecc.01G406200 Theobroma cacao HOM05D002214 ORTHO05D007367 7.2e-09 64.7 83 43.4
C07p46730 Brassica napus HOM05D002214 ORTHO05D007367 9.4e-09 64.3 90 41.1
Thhalv10010397m.g Eutrema salsugineum HOM05D002214 ORTHO05D007367 1.2e-08 63.9 100 38.0
BolC7t45191H Brassica oleracea HOM05D002214 ORTHO05D007367 1.6e-08 63.5 90 41.1
BraA03t13966Z Brassica rapa HOM05D002214 ORTHO05D007367 2.7e-08 62.8 90 41.1
BcaC06g33020 Brassica carinata HOM05D002214 ORTHO05D007367 4.7e-08 62.0 87 39.1
Psat5g212440 Pisum sativum HOM05D002214 ORTHO05D007367 4.7e-08 62.0 109 42.2
AT3G52030 Arabidopsis thaliana HOM05D002214 ORTHO05D007367 1.0e-07 60.8 92 38.0
TPR.G14558 Trifolium pratense HOM05D002214 ORTHO05D007367 1.0e-07 60.8 83 42.2
CARHR161660 Cardamine hirsuta HOM05D002214 ORTHO05D007367 1.4e-07 60.5 95 40.0
AL5G32570 Arabidopsis lyrata HOM05D002214 ORTHO05D007367 4.0e-07 58.9 137 32.8
Aqoxy2G00221 Aquilegia oxysepala HOM05D002214 ORTHO05D007367 5.2e-07 58.5 85 44.7
Ca_24837_v3 Cicer arietinum L. HOM05D002214 ORTHO05D007367 1.2e-06 57.4 97 36.1
Phvul.005G035100 Phaseolus vulgaris HOM05D002214 ORTHO05D007367 1.2e-06 57.4 87 36.8
arahy.Tifrunner.gnm1.ann1.IP56PK Arachis hypogaea HOM05D002214 ORTHO05D007367 2.0e-06 56.6 98 30.6
Carub.0005s1835 Capsella rubella HOM05D002214 ORTHO05D007367 2.0e-06 56.6 87 37.9
Peaxi162Scf01270g00126 Petunia axillaris HOM05D002214 ORTHO05D007367 2.6e-06 56.2 125 35.2
CDE04G1985 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 4.4e-06 55.5 47 61.7
THA.LOC104817574 Tarenaya hassleriana HOM05D002214 ORTHO05D007367 5.7e-06 55.1 89 37.1
arahy.Tifrunner.gnm1.ann1.KRTV89 Arachis hypogaea HOM05D002214 ORTHO05D007367 7.5e-06 54.7 98 29.6
unitig_22.g5896 Utricularia gibba HOM05D002214 ORTHO05D007367 7.5e-06 54.7 93 25.8
Lj3g0007976 Lotus japonicus HOM05D002214 ORTHO05D007367 9.7e-06 54.3 98 37.8
VMungo1217G0001 Vigna mungo HOM05D002214 ORTHO05D007367 9.7e-06 54.3 87 33.3


User provided reference genes

Program Settings