Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 3980.6 2049 100.0
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2229.9 2123 60.4
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 2182.1 1970 61.4
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 2140.2 1683 67.0
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 2130.5 2156 57.1
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 2105.9 1612 68.7
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 2087.0 2125 57.1
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 2076.6 2142 56.5
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2075.4 1608 68.0
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 2073.9 2119 57.7
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 2067.7 2120 56.5
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 2051.9 2138 55.9
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 2050.4 2254 54.1
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 2047.3 2142 56.6
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2044.6 2119 55.5
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 2043.9 2119 55.4
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2040.0 2119 55.5
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 2039.6 2111 56.1
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 2039.2 2128 56.2
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 2031.5 2138 55.6
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 2015.7 2149 55.7
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 2009.6 2065 56.2
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 1987.2 2131 55.0
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 1984.1 2134 54.9
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1966.4 1752 63.5
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1962.6 1921 56.6
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1960.7 1798 59.6
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1952.2 2128 54.0
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 1937.2 2135 53.9
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1930.6 1963 56.0
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1929.1 2125 53.8
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1926.4 2138 53.3
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 1916.0 2133 53.3
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1914.0 1960 55.7
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1912.5 2127 53.5
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1907.9 2126 53.4
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 1899.4 2122 53.1
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 1887.8 1940 55.9
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1886.3 1934 54.9
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1885.2 2112 53.1
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 1877.4 1983 54.9
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 1870.5 2121 52.5
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1870.1 1935 55.4
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1865.1 2116 52.7
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1863.6 2094 52.6
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 1862.0 1941 55.5
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1860.1 1951 54.3
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1858.2 2130 52.1
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 1857.0 1987 53.8
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1854.7 1963 54.3
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1853.6 1927 55.8
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1853.6 1927 55.8
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 1853.2 1936 54.8
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 1845.9 1942 54.5
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1841.2 2126 51.6
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1831.2 1958 54.3
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1830.8 1944 54.3
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1830.1 1951 53.6
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1829.7 2119 52.8
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1828.9 1963 53.5
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1825.4 2236 50.1
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1816.2 1400 68.3
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1813.5 2060 51.3
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1812.7 1912 54.2
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1812.0 2097 50.6
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1808.5 1846 55.7
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1805.0 1951 53.0
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1800.0 1949 53.2
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1789.6 2133 51.2
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 1780.8 2134 50.4
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1778.5 1967 52.7
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1778.1 1918 53.3
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1777.3 1954 52.7
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1776.1 2121 50.7
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1736.1 1962 51.8
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1728.4 1537 60.7
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1724.9 2010 51.3
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1721.1 2170 49.9
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1717.6 2130 49.3
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1714.9 1976 51.6
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1711.8 1960 51.9
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1710.3 1972 51.1
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 1707.2 1933 51.9
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1701.0 1931 51.5
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1699.1 1948 50.9
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1697.6 1964 51.5
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1697.2 1946 51.3
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1694.1 1935 51.8
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1692.6 1931 51.0
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1686.8 1937 50.9
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1681.0 1739 54.0
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1679.5 1930 50.9
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1675.6 1951 50.5
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1667.5 1932 50.9
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1654.0 2250 46.8
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1595.1 1974 48.0
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1563.9 1310 63.6
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1417.1 1956 44.5
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1415.6 1542 51.6
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1345.9 1162 63.4
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1107.8 1205 56.3
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 8.1e-310 1068.1 1916 40.0
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 6.9e-309 1065.1 1937 38.2
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 1.2e-305 1054.3 959 59.5
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 2.0e-284 983.8 1044 53.9
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 1.4e-280 971.1 1674 38.0
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 4.2e-266 922.9 846 61.9
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 2.4e-261 907.1 1593 36.5
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.0e-251 875.2 1741 34.6
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 4.4e-247 859.8 2089 32.9
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 2.9e-243 847.0 1002 51.6
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 3.3e-234 817.0 1226 44.5
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.5e-212 743.8 1257 38.9
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 3.9e-211 740.3 640 61.6
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 3.8e-206 723.8 1009 44.2
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 1.7e-198 698.4 1211 39.8
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 3.5e-196 690.6 1544 32.9
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 6.7e-179 633.3 1840 28.2
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 4.8e-177 627.1 577 58.4
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 7.6e-175 619.8 851 45.8
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 2.6e-159 568.2 504 62.7
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.4e-131 476.1 694 42.7
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 3.0e-131 474.9 790 45.6
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 5.4e-128 464.2 572 46.9
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 6.6e-118 430.6 633 42.3
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.4e-106 391.3 632 39.6
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 5.4e-88 331.3 479 43.8
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 7.3e-85 320.9 271 62.0
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 8.4e-73 280.8 379 43.8
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 4.6e-71 275.0 265 52.1
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 1.4e-64 253.4 377 40.6
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 1.9e-53 216.5 422 38.4
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 6.9e-51 208.0 322 43.5
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 8.5e-49 201.1 252 42.9
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 1.4e-48 200.3 175 61.1
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 2.5e-48 199.5 682 30.5
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 3.1e-43 182.6 179 50.8
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 1.4e-40 173.7 183 48.6
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 6.1e-39 168.3 179 47.5
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 1.0e-38 167.5 135 61.5
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 1.7e-36 160.2 223 42.6
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 2.6e-34 152.9 122 66.4
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 7.2e-32 144.8 110 65.5
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 6.1e-31 141.7 234 37.6
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 3.0e-30 139.4 113 61.9
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 5.7e-29 135.2 1213 20.9
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 7.7e-26 124.8 105 61.0
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 1.5e-24 120.6 327 31.8
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 1.4e-22 114.0 131 50.4
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 1.2e-21 110.9 475 24.6
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.7e-20 107.1 80 63.8
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 1.2e-15 90.9 56 75.0
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 3.6e-15 89.4 55 72.7
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 5.7e-13 82.0 144 39.6
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 7.5e-13 81.6 165 37.6
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 2.0e-10 73.6 72 51.4
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 7.7e-10 71.6 139 38.1
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 2.3e-09 70.1 110 42.7
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 3.8e-09 69.3 70 48.6
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 2.1e-07 63.5 39 76.9
FAN07G2918 Fragaria x ananassa HOM05D004392 ORTHO05D004846 2.3e-06 60.1 103 43.7
FvH4_7g01070 Fragaria vesca HOM05D011336 ORTHO05D017014 8.9e-06 58.2 103 42.7


User provided reference genes

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