Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 2.3e-199 698.7 359 100.0
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 1.7e-170 602.8 346 88.4
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.1e-169 600.1 347 87.9
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.4e-169 599.7 335 89.9
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 3.5e-168 595.1 351 85.8
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 5.6e-166 587.8 346 86.4
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 2.8e-165 585.5 328 87.8
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 1.4e-164 583.2 338 85.8
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 1.4e-164 583.2 346 85.3
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 1.8e-164 582.8 331 87.9
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 2.4e-164 582.4 345 85.2
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 3.1e-164 582.0 327 88.4
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 9.0e-164 580.5 344 86.3
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 2.0e-163 579.3 337 86.4
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 2.0e-163 579.3 327 88.1
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 2.0e-163 579.3 349 84.0
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 5.8e-163 577.8 327 87.5
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 2.9e-162 575.5 352 83.2
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 3.8e-162 575.1 337 85.8
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 4.9e-162 574.7 341 84.2
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 6.4e-162 574.3 349 83.4
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 6.4e-162 574.3 347 83.0
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 6.4e-162 574.3 373 80.2
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 8.4e-162 573.9 348 82.8
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 1.1e-161 573.5 337 84.9
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 1.4e-161 573.2 337 84.9
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.4e-161 573.2 349 84.0
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 2.4e-161 572.4 349 83.4
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 3.2e-161 572.0 349 83.4
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 3.2e-161 572.0 349 83.4
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 3.2e-161 572.0 347 84.1
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 5.5e-161 571.2 340 84.7
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 7.1e-161 570.9 349 83.1
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 1.2e-160 570.1 349 83.1
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.2e-160 570.1 340 84.1
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.2e-160 570.1 340 84.7
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 1.2e-160 570.1 336 83.9
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 1.6e-160 569.7 349 83.1
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 2.1e-160 569.3 349 82.8
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 2.1e-160 569.3 349 82.8
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 2.1e-160 569.3 336 84.8
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 2.1e-160 569.3 352 81.5
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 2.7e-160 568.9 349 82.2
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 3.5e-160 568.5 341 82.7
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 4.6e-160 568.2 349 82.5
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 4.6e-160 568.2 335 84.5
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 4.6e-160 568.2 349 82.5
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 7.9e-160 567.4 349 82.8
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 1.0e-159 567.0 341 82.7
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 1.3e-159 566.6 349 82.2
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 2.3e-159 565.8 341 82.7
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 2.3e-159 565.8 347 81.8
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 5.1e-159 564.7 339 83.5
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 6.7e-159 564.3 322 86.3
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 1.9e-158 562.8 340 83.5
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 2.5e-158 562.4 337 83.4
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 4.3e-158 561.6 324 86.4
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 5.6e-158 561.2 349 82.5
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.6e-158 561.2 324 86.4
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.6e-158 561.2 324 86.4
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.6e-158 561.2 324 86.4
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 1.3e-157 560.1 349 81.9
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 1.3e-157 560.1 349 82.2
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 1.3e-157 560.1 349 81.9
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 1.3e-157 560.1 345 81.2
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 2.8e-157 558.9 352 81.2
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.8e-157 558.9 321 86.0
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 2.8e-157 558.9 348 82.2
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 3.7e-157 558.5 328 84.1
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.7e-157 558.5 321 86.0
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 6.2e-157 557.8 349 82.5
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 8.2e-157 557.4 324 84.0
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 1.8e-156 556.2 345 80.6
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 5.3e-156 554.7 338 82.2
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 9.0e-156 553.9 324 85.2
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 4.5e-155 551.6 341 80.9
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 7.6e-155 550.8 321 85.4
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 1.0e-154 550.4 336 80.7
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 1.0e-154 550.4 327 85.0
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 1.0e-154 550.4 326 83.1
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.3e-154 550.1 341 80.9
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.7e-154 549.7 341 81.8
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 1.7e-154 549.7 325 83.4
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 2.9e-154 548.9 348 81.6
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 3.8e-154 548.5 337 81.9
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 6.5e-154 547.7 347 80.7
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 1.9e-153 546.2 346 78.9
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 1.9e-153 546.2 345 80.3
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 2.5e-153 545.8 342 80.7
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 4.2e-153 545.0 370 75.9
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 5.5e-153 544.7 336 81.0
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 7.1e-153 544.3 348 79.6
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 3.5e-152 542.0 368 75.8
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 7.9e-152 540.8 334 80.5
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 5.1e-151 538.1 337 82.8
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 9.7e-150 533.9 342 78.4
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 2.8e-149 532.3 356 78.4
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 8.2e-149 530.8 324 79.3
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 1.4e-148 530.0 295 89.5
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 5.3e-148 528.1 327 80.1
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 6.9e-148 527.7 368 74.5
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 4.5e-147 525.0 301 85.4
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 2.9e-146 522.3 345 76.5
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 7.9e-144 514.2 400 70.2
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 2.8e-141 505.8 350 74.3
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 4.8e-141 505.0 324 79.3
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 2.4e-140 502.7 409 66.5
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.7e-138 496.5 336 71.4
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 2.2e-138 496.1 283 86.6
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 1.9e-137 493.0 353 72.0
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 6.1e-136 488.0 352 70.2
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 2.6e-134 482.6 345 72.2
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 1.7e-130 469.9 361 69.5
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.2e-128 463.8 323 70.0
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 2.7e-128 462.6 255 90.2
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 1.0e-127 460.7 325 69.5
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 1.5e-126 456.8 344 66.0
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 2.0e-126 456.4 302 75.5
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.3e-125 453.8 328 69.2
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 2.2e-125 453.0 283 82.3
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.4e-124 450.3 347 66.3
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 2.0e-123 446.4 307 72.3
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.2e-122 443.0 359 64.1
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 1.8e-119 433.3 320 66.2
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 9.7e-118 427.6 255 83.1
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 3.5e-115 419.1 328 63.1
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 2.9e-114 416.0 308 65.3
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 3.2e-113 412.5 245 84.1
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 9.4e-113 411.0 330 67.0
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 1.2e-112 410.6 343 65.6
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 1.2e-110 404.1 246 81.7
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.4e-108 396.4 300 65.3
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 1.2e-107 394.0 243 82.3
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.6e-107 393.7 373 57.6
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.3e-106 389.8 273 68.5
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 6.6e-106 388.3 258 76.4
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.5e-102 374.8 275 69.1
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.8e-100 370.2 353 59.5
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.4e-100 369.8 255 72.5
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.6e-99 367.1 239 77.0
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.9e-97 360.1 246 74.0
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 3.6e-96 355.9 341 54.5
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 2.0e-86 323.6 194 84.0
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.6e-75 287.3 285 58.2
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 4.6e-75 285.8 203 74.9
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 7.6e-62 241.9 158 74.7
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 7.6e-62 241.9 307 46.3
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.7e-61 240.7 161 71.4
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.6e-59 234.2 135 83.7
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 1.8e-55 220.7 253 53.0
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 4.0e-55 219.5 130 83.8
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 5.8e-54 215.7 329 45.6
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 1.0e-50 204.9 115 86.1
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 3.2e-44 183.3 236 38.6
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 3.3e-41 173.3 210 45.7
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.6e-40 171.0 104 79.8
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.6e-38 163.7 90 86.7
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 7.6e-38 162.2 95 76.8
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 2.1e-35 154.1 101 72.3
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 6.1e-35 152.5 88 80.7
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 6.7e-34 149.1 96 80.2
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 6.3e-32 142.5 110 70.0
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 2.0e-30 137.5 76 86.8
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 5.0e-29 132.9 189 49.2
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 8.5e-29 132.1 80 75.0
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 2.6e-22 110.5 83 68.7
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 1.1e-20 105.1 71 69.0
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 3.2e-20 103.6 72 62.5
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 5.5e-20 102.8 73 68.5
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 2.1e-19 100.9 71 66.2
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 7.9e-19 99.0 63 81.0
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 3.0e-18 97.1 62 77.4
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 3.1e-15 87.0 78 65.4
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 4.8e-08 63.2 50 64.0


User provided reference genes

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