Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 2.0e-95 352.4 179 100.0
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 2.0e-95 352.4 179 100.0
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.1e-82 310.1 180 87.2
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 3.1e-80 302.0 178 83.1
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 4.4e-79 298.1 178 83.1
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 5.8e-79 297.7 179 81.6
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 9.9e-79 297.0 181 84.0
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 2.2e-78 295.8 179 83.8
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 2.2e-78 295.8 179 83.8
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 2.9e-78 295.4 179 83.8
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 6.4e-78 294.3 178 81.5
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 8.4e-78 293.9 178 81.5
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.4e-77 293.1 180 82.8
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 4.2e-77 291.6 179 82.1
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 9.3e-77 290.4 179 82.7
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 9.3e-77 290.4 179 82.7
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 4.6e-76 288.1 179 81.6
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 4.6e-76 288.1 179 82.1
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.3e-75 285.8 175 81.7
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 3.0e-75 285.4 180 79.4
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 1.1e-74 283.5 180 81.7
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 1.1e-74 283.5 177 79.7
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 1.5e-74 283.1 167 85.0
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.5e-74 283.1 179 81.0
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 4.3e-74 281.6 179 81.6
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 2.8e-73 278.9 180 79.4
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 2.8e-73 278.9 180 79.4
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 6.2e-73 277.7 179 79.9
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 6.2e-73 277.7 178 79.2
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 8.1e-73 277.3 179 80.4
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.1e-72 276.9 180 78.3
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 1.8e-72 276.2 180 77.8
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.8e-72 276.2 178 77.5
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.8e-72 276.2 173 80.9
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 1.8e-72 276.2 172 80.8
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 1.8e-72 276.2 188 75.0
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 1.8e-72 276.2 181 79.0
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 2.4e-72 275.8 180 78.3
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 3.1e-72 275.4 172 80.2
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 5.3e-72 274.6 180 77.8
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 6.9e-72 274.2 173 80.3
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 6.9e-72 274.2 173 80.3
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 9.0e-72 273.9 179 78.8
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 9.0e-72 273.9 172 80.2
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 9.0e-72 273.9 180 78.9
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.2e-71 273.5 173 80.3
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.5e-71 273.1 172 80.2
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 2.0e-71 272.7 181 78.5
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 4.5e-71 271.6 173 79.8
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 5.8e-71 271.2 179 77.1
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 5.8e-71 271.2 180 76.1
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 7.6e-71 270.8 175 76.6
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 7.6e-71 270.8 172 76.2
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 7.6e-71 270.8 181 79.6
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 2.2e-70 269.2 179 78.8
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 8.4e-70 267.3 179 75.4
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.1e-69 266.9 179 73.7
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.1e-69 266.9 179 76.5
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.4e-69 265.8 179 75.4
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.4e-69 265.8 175 76.0
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 2.4e-69 265.8 180 76.7
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.2e-69 265.4 179 73.2
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 4.2e-69 265.0 178 76.4
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 4.2e-69 265.0 178 76.4
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 4.2e-69 265.0 175 80.6
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 4.2e-69 265.0 172 78.5
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 5.4e-69 264.6 179 77.7
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 5.4e-69 264.6 177 75.7
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 7.1e-69 264.2 178 75.8
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 7.1e-69 264.2 181 75.7
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 9.3e-69 263.8 178 75.8
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 9.3e-69 263.8 178 75.8
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 1.6e-68 263.1 174 76.4
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 2.7e-68 262.3 179 77.1
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 6.0e-68 261.2 178 78.1
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 1.3e-67 260.0 179 77.1
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.3e-67 260.0 176 78.4
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 3.9e-67 258.5 181 74.0
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.1e-66 256.9 176 76.7
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 1.5e-66 256.5 174 71.3
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 1.9e-66 256.1 170 75.3
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 4.3e-66 255.0 182 72.0
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 4.3e-66 255.0 170 75.9
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 4.3e-66 255.0 181 74.6
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 5.6e-66 254.6 170 75.9
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 9.6e-66 253.8 174 74.1
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.3e-65 253.4 179 72.1
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 1.3e-65 253.4 166 77.1
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 1.3e-65 253.4 178 71.3
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 3.7e-65 251.9 174 74.1
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 1.1e-64 250.4 178 72.5
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 1.4e-64 250.0 170 74.7
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.4e-64 250.0 170 72.9
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.4e-64 250.0 176 73.9
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 1.8e-64 249.6 176 72.2
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 3.1e-64 248.8 174 70.7
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 5.3e-64 248.1 174 73.0
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 5.3e-64 248.1 174 73.0
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 6.9e-64 247.7 176 72.2
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 1.2e-63 246.9 179 72.1
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 1.2e-63 246.9 179 72.1
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.0e-63 246.1 179 69.3
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 3.4e-63 245.4 174 69.5
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 3.4e-63 245.4 158 79.1
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 5.8e-63 244.6 177 71.2
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.3e-62 243.4 175 69.7
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 1.7e-62 243.0 179 72.6
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 2.9e-62 242.3 182 70.3
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.8e-62 241.9 175 69.1
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 4.9e-62 241.5 181 70.2
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 4.9e-62 241.5 167 74.3
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.1e-61 240.4 179 70.9
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 4.2e-61 238.4 175 70.9
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 2.1e-60 236.1 178 70.2
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 3.5e-60 235.3 182 68.7
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 4.6e-60 235.0 177 70.1
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 6.0e-60 234.6 177 69.5
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 3.0e-59 232.3 175 69.1
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.1e-58 230.3 175 69.7
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 1.5e-58 229.9 180 65.6
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 2.5e-58 229.2 177 68.9
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 3.3e-58 228.8 176 68.2
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 3.3e-58 228.8 180 67.2
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 4.8e-57 224.9 152 72.4
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 1.1e-56 223.8 151 75.5
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 6.9e-56 221.1 194 63.9
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 1.2e-55 220.3 245 51.0
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 5.8e-55 218.0 157 74.5
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 1.4e-53 213.4 173 67.1
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 5.5e-53 211.5 165 67.9
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 4.3e-50 201.8 121 80.2
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 5.3e-48 194.9 179 62.0
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 4.5e-47 191.8 175 57.7
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 5.9e-47 191.4 191 58.1
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 5.0e-46 188.3 179 55.3
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 3.2e-45 185.7 147 61.2
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 1.6e-44 183.3 194 58.2
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 2.7e-44 182.6 143 60.1
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 1.1e-42 177.2 177 52.5
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 3.7e-41 172.2 182 53.3
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 1.4e-37 160.2 131 64.1
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.1e-36 156.4 122 65.6
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 6.1e-36 154.8 117 67.5
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 9.7e-34 147.5 86 81.4
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 4.8e-33 145.2 174 48.9
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 1.1e-32 144.1 85 81.2
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.8e-32 143.3 86 77.9
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 3.8e-30 135.6 147 55.8
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 3.8e-30 135.6 130 56.2
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 3.2e-29 132.5 131 56.5
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 1.0e-22 110.9 86 65.1
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 1.3e-22 110.5 125 44.0
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 1.7e-22 110.2 109 59.6
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 1.7e-22 110.2 109 59.6
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 3.8e-22 109.0 124 46.0
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.2e-21 105.9 86 64.0
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 8.0e-20 101.3 105 44.8
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 2.2e-17 93.2 156 36.5
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.9e-14 82.8 46 80.4
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 3.6e-12 75.9 65 60.0
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 1.4e-11 73.9 79 50.6
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.8e-11 73.6 193 35.8
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 1.5e-10 70.5 89 39.3
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 2.6e-10 69.7 79 50.6
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 1.7e-09 67.0 84 46.4


User provided reference genes

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