Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 9.9e-101 370.2 193 100.0
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 7.4e-80 300.8 254 69.7
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 4.5e-53 211.8 213 61.5
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 1.9e-51 206.5 210 58.6
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 4.4e-48 195.3 213 54.5
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 7.5e-48 194.5 211 55.0
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 1.6e-45 186.8 212 52.8
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 3.5e-45 185.7 212 54.2
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 5.9e-45 184.9 212 53.8
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 5.9e-45 184.9 211 51.7
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 1.0e-44 184.1 212 53.8
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 1.7e-44 183.3 211 54.5
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 3.8e-44 182.2 213 53.5
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 3.2e-43 179.1 207 52.2
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 2.1e-42 176.4 214 51.9
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 8.0e-42 174.5 214 50.5
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 5.2e-41 171.8 195 53.3
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 6.8e-41 171.4 213 50.7
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 1.2e-40 170.6 215 49.8
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 3.4e-40 169.1 207 49.3
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 7.5e-40 167.9 219 48.4
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 9.8e-40 167.5 195 52.3
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 9.8e-40 167.5 211 47.9
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 1.3e-39 167.2 196 53.6
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 1.3e-39 167.2 204 51.5
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 2.2e-39 166.4 213 50.2
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 6.3e-39 164.9 204 51.0
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 3.1e-38 162.5 217 47.5
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 1.2e-37 160.6 206 48.5
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 1.2e-37 160.6 215 48.4
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 1.6e-37 160.2 212 48.1
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 3.5e-37 159.1 197 49.7
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 3.5e-37 159.1 213 47.4
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 4.5e-37 158.7 212 46.7
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 5.9e-37 158.3 210 48.1
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 2.9e-36 156.0 213 46.5
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 3.8e-36 155.6 199 49.2
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 3.8e-36 155.6 199 47.7
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 3.8e-36 155.6 200 48.0
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 5.0e-36 155.2 211 46.4
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 5.0e-36 155.2 211 46.0
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 6.6e-36 154.8 225 43.6
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 8.6e-36 154.5 204 48.0
Peaxi162Scf00038g00842 Petunia axillaris HOM05D005732 ORTHO05D007062 1.1e-35 154.1 214 41.1
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 1.1e-35 154.1 213 47.9
Sopen03g039690 Solanum pennellii HOM05D005732 ORTHO05D007062 1.5e-35 153.7 211 46.0
Solyc03g120870.3 Solanum lycopersicum HOM05D005732 ORTHO05D007062 1.9e-35 153.3 211 46.0
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 3.3e-35 152.5 191 50.3
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 3.3e-35 152.5 189 48.7
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 1.6e-34 150.2 213 45.5
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 1.6e-34 150.2 205 48.3
PGSC0003DMG400002535 Solanum tuberosum HOM05D005732 ORTHO05D007062 1.6e-34 150.2 209 44.5
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 2.1e-34 149.8 202 47.5
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 2.8e-34 149.4 198 47.0
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 2.8e-34 149.4 198 47.0
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 6.1e-34 148.3 211 46.0
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 8.0e-34 147.9 216 46.3
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.0e-33 147.5 215 46.5
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 1.0e-33 147.5 199 47.2
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 1.4e-33 147.1 205 45.4
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.8e-33 146.7 172 51.2
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 1.8e-33 146.7 146 59.6
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 3.0e-33 146.0 208 46.2
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 3.0e-33 146.0 216 45.8
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 3.0e-33 146.0 170 50.6
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 3.0e-33 146.0 211 44.1
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 3.0e-33 146.0 172 50.6
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 4.0e-33 145.6 168 51.8
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 3.4e-32 142.5 196 50.0
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 4.4e-32 142.1 172 51.2
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 5.7e-32 141.7 211 45.0
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 7.5e-32 141.4 198 46.0
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 1.7e-31 140.2 217 43.3
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 1.7e-31 140.2 215 45.6
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 1.7e-31 140.2 169 49.1
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 2.2e-31 139.8 215 43.7
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 2.2e-31 139.8 219 44.3
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 3.2e-30 136.0 202 44.6
MBI19_g26309_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 3.2e-30 136.0 216 39.8
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 4.1e-30 135.6 219 42.5
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 9.2e-30 134.4 171 48.0
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 1.2e-29 134.0 168 50.6
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 7.8e-29 131.3 214 41.1
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 1.0e-28 131.0 173 46.2
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 2.3e-28 129.8 172 47.1
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 3.9e-28 129.0 201 43.3
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 3.9e-28 129.0 188 46.8
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 8.6e-28 127.9 165 46.1
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 1.1e-27 127.5 201 43.8
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 7.3e-27 124.8 194 42.3
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 2.3e-25 119.8 204 44.1
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 6.8e-25 118.2 172 45.3
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 1.3e-23 114.0 179 39.7
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 2.2e-23 113.2 169 42.0
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 3.7e-23 112.5 72 79.2
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 4.9e-23 112.1 169 43.8
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 1.4e-22 110.5 171 43.9
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 1.4e-22 110.5 168 44.0
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 1.4e-22 110.5 167 41.9
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 2.4e-22 109.8 168 39.9
MBI04_g44953_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 3.2e-22 109.4 72 72.2
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 4.1e-22 109.0 169 40.2
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 4.1e-22 109.0 151 43.0
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 7.0e-22 108.2 169 40.8
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 2.0e-21 106.7 178 42.1
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 2.0e-21 106.7 210 34.8
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 2.7e-21 106.3 168 40.5
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 3.5e-21 105.9 170 40.6
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 4.6e-21 105.5 169 39.6
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 4.6e-21 105.5 169 42.0
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 4.6e-21 105.5 167 41.9
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 7.8e-21 104.8 170 38.8
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 7.8e-21 104.8 169 39.1
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 7.8e-21 104.8 169 39.1
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 7.8e-21 104.8 169 39.1
Dinv30452 Davidia involucrata HOM05D005732 ORTHO05D007062 1.0e-20 104.4 128 50.0
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 1.3e-20 104.0 162 38.9
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 5.0e-20 102.1 162 42.6
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 5.0e-20 102.1 169 38.5
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 6.6e-20 101.7 162 42.6
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 6.6e-20 101.7 162 42.6
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 3.3e-19 99.4 176 38.1
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 7.3e-19 98.2 169 37.9
ATR0705G087 Amborella trichopoda HOM05D005732 ORTHO05D007062 9.5e-19 97.8 65 72.3
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 4.7e-18 95.5 165 38.2
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 1.4e-17 94.0 165 36.4
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 2.3e-17 93.2 165 35.8
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 2.3e-17 93.2 165 35.8
ClCG09G000040 Citrullus lanatus HOM05D005732 ORTHO05D007062 2.3e-17 93.2 182 40.1
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 2.6e-16 89.7 160 35.0
CDE02G4152 Ceratophyllum demersum HOM05D005732 ORTHO05D007062 2.6e-16 89.7 217 31.3
Duzib160G0019 Durio zibethinus HOM05D005732 ORTHO05D007062 5.8e-16 88.6 165 38.2
Prupe.3G065500 Prunus persica HOM05D005732 ORTHO05D007062 6.4e-15 85.1 76 61.8
CARHR074750 Cardamine hirsuta HOM05D005732 ORTHO05D007062 2.1e-13 80.1 72 54.2
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 3.5e-13 79.3 47 78.7
Sc15g0002000 Simmondsia chinensis HOM05D005732 ORTHO05D007062 3.3e-11 72.8 85 47.1
vmacro17018 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 5.2e-09 65.5 98 42.9
ATR0705G122 Amborella trichopoda HOM05D005732 ORTHO05D007062 6.8e-09 65.1 100 39.0
CARHR049040 Cardamine hirsuta HOM05D005732 ORTHO05D007062 2.9e-07 59.7 78 46.2


User provided reference genes

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