Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 0.0e+00 1251.9 734 100.0
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.9e-200 703.4 740 62.7
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 3.2e-200 702.6 771 63.4
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 6.7e-190 668.3 771 59.0
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 1.5e-186 657.1 765 58.0
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 7.7e-186 654.8 568 65.0
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 3.8e-185 652.5 745 61.3
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 5.5e-184 648.7 759 58.6
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 2.7e-183 646.4 628 63.7
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 3.6e-183 646.0 739 59.4
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 2.3e-182 643.3 752 61.3
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 8.8e-182 641.3 746 60.5
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 2.6e-181 639.8 543 64.5
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 3.3e-181 639.4 753 59.6
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 9.7e-181 637.9 535 65.0
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 3.1e-179 632.9 752 60.4
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 1.3e-177 627.5 518 67.0
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 7.2e-176 621.7 749 58.5
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 8.0e-175 618.2 627 61.7
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.0e-174 617.8 772 57.9
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 1.4e-174 617.5 566 60.4
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.3e-174 616.7 749 58.2
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.0e-174 616.3 750 57.5
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 2.0e-173 613.6 756 56.2
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 2.6e-173 613.2 518 63.7
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 5.7e-173 612.1 536 64.4
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 1.7e-172 610.5 540 62.2
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.2e-172 610.1 752 58.9
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.8e-172 609.8 545 62.8
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 3.7e-172 609.4 545 62.6
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 4.8e-172 609.0 537 62.9
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 4.8e-172 609.0 756 57.5
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 4.1e-171 605.9 773 58.3
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 4.1e-171 605.9 545 61.8
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 4.1e-171 605.9 621 61.8
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 5.3e-171 605.5 545 62.2
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 1.6e-170 604.0 541 63.6
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 5.9e-170 602.1 752 56.5
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 1.0e-169 601.3 543 63.2
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 1.7e-169 600.5 522 63.8
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 5.0e-169 599.0 549 60.3
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 5.0e-169 599.0 487 65.1
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 8.5e-169 598.2 634 61.5
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 3.2e-168 596.3 557 61.0
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 5.5e-168 595.5 542 62.7
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 9.4e-168 594.7 541 63.0
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 1.2e-167 594.3 546 61.7
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 1.2e-167 594.3 754 53.7
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 1.6e-167 594.0 547 64.4
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 2.7e-167 593.2 531 64.6
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 4.7e-167 592.4 555 59.6
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 1.8e-166 590.5 547 64.0
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 3.0e-166 589.7 724 56.2
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 5.2e-166 589.0 457 67.4
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 8.8e-166 588.2 489 65.0
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 1.5e-165 587.4 754 55.7
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 1.5e-165 587.4 532 64.1
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 1.3e-164 584.3 519 64.7
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 2.4e-163 580.1 749 54.2
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 3.1e-163 579.7 545 60.6
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 1.6e-162 577.4 739 57.8
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 1.0e-161 574.7 528 61.7
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 1.9e-160 570.5 746 56.4
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 7.2e-160 568.5 545 58.5
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 8.0e-159 565.1 622 66.6
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 3.0e-158 563.1 539 59.4
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 2.0e-157 560.5 744 53.1
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 3.4e-157 559.7 446 66.4
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 9.8e-157 558.1 497 62.8
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 1.7e-156 557.4 530 59.6
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 2.8e-156 556.6 608 56.6
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 4.9e-156 555.8 577 58.1
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 9.1e-155 551.6 545 56.5
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 4.5e-154 549.3 533 58.9
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 5.9e-154 548.9 545 59.8
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 5.9e-154 548.9 518 59.7
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 1.7e-153 547.4 559 58.5
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 1.7e-153 547.4 536 59.3
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 5.0e-153 545.8 536 59.3
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 1.1e-152 544.7 488 62.1
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 7.2e-152 542.0 533 58.3
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 1.6e-151 540.8 558 57.0
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 1.0e-150 538.1 495 59.0
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 1.4e-150 537.7 516 60.7
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 4.0e-150 536.2 464 62.7
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 1.5e-149 534.3 530 58.5
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 4.9e-148 529.3 428 64.3
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 1.4e-147 527.7 512 59.2
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 2.4e-147 526.9 516 58.5
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 2.5e-144 516.9 551 57.4
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 4.7e-143 512.7 451 61.2
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 1.4e-142 511.1 469 59.3
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 4.0e-142 509.6 516 59.5
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 5.8e-141 505.8 613 53.2
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 7.5e-141 505.4 785 48.0
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 5.6e-136 489.2 474 55.9
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 1.1e-134 485.0 535 51.6
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 1.8e-134 484.2 468 56.4
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 8.3e-132 475.3 411 60.6
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 1.9e-131 474.2 552 52.5
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 4.1e-131 473.0 485 54.0
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 5.4e-131 472.6 627 53.0
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 7.1e-131 472.2 485 55.1
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 2.3e-129 467.2 743 48.2
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 8.6e-129 465.3 533 52.3
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.1e-128 464.9 516 55.6
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.2e-125 454.9 533 52.9
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 4.1e-123 446.4 489 52.8
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 8.6e-121 438.7 402 58.5
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 3.8e-116 423.3 444 52.3
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 9.6e-112 408.7 387 59.7
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 4.2e-107 393.3 474 49.2
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 2.7e-106 390.6 596 56.4
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 4.6e-98 363.2 358 54.2
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 3.3e-96 357.1 503 43.5
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 1.1e-94 352.1 487 44.4
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 6.5e-92 342.8 389 47.0
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 9.3e-91 339.0 386 51.0
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 2.7e-90 337.4 385 49.6
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.5e-88 330.9 476 44.1
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 1.0e-81 308.9 443 45.1
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 7.7e-77 292.7 328 55.5
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.0e-76 292.4 227 66.1
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 6.5e-76 289.7 207 70.0
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 7.0e-62 243.0 529 35.9
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 7.0e-62 243.0 388 40.7
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 1.6e-58 231.9 469 53.5
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.0e-57 229.2 434 38.2
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 1.1e-56 225.7 185 63.8
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 2.7e-50 204.5 140 66.4
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 2.0e-48 198.4 232 50.4
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 4.2e-43 180.6 142 63.4
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 4.0e-41 174.1 545 29.4
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 4.9e-31 140.6 180 55.0
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 6.4e-31 140.2 116 61.2
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 1.2e-29 136.0 323 52.0
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.0e-25 122.9 120 57.5
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 1.0e-25 122.9 123 55.3
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 2.3e-25 121.7 123 55.3
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 1.9e-19 102.1 228 35.1
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.5e-19 101.7 209 55.5
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 5.6e-19 100.5 140 55.7
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.6e-18 99.0 129 48.1
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 4.0e-17 94.4 95 53.7
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 2.6e-16 91.7 147 39.5
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 2.7e-13 81.6 142 40.1
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 3.5e-13 81.3 170 34.7
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 1.7e-12 79.0 86 54.7
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 6.2e-10 70.5 44 72.7
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 1.2e-08 66.2 116 41.4
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 1.3e-07 62.8 66 54.5


User provided reference genes

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