Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 0.0e+00 1109.7 648 100.0
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 1.5e-185 653.7 507 69.2
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 1.7e-165 587.0 689 52.1
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 2.1e-163 580.1 544 61.2
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 1.7e-160 570.5 574 56.1
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 1.1e-159 567.8 522 60.2
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.2e-158 564.3 522 60.0
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 2.7e-158 563.1 530 58.5
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 7.8e-158 561.6 544 59.6
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 8.6e-157 558.1 507 61.1
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 8.6e-157 558.1 489 63.4
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 3.3e-156 556.2 497 59.4
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 5.2e-154 548.9 501 58.5
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 2.4e-151 540.0 540 56.9
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 2.3e-149 533.5 517 57.1
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 8.6e-149 531.6 547 55.2
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 1.9e-148 530.4 563 54.0
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 5.2e-146 522.3 533 55.0
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.5e-145 520.8 603 50.2
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 3.4e-145 519.6 561 52.9
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 1.1e-143 514.6 565 52.2
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 4.2e-143 512.7 595 50.3
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 6.0e-142 508.8 606 49.3
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 1.0e-141 508.1 495 57.4
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 1.3e-141 507.7 558 53.2
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 2.3e-141 506.9 541 53.8
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 2.5e-140 503.4 569 53.3
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 4.3e-140 502.7 563 49.7
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 9.6e-140 501.5 554 50.0
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 3.6e-139 499.6 584 49.8
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 6.2e-139 498.8 609 48.8
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 1.4e-138 497.7 724 45.2
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 9.0e-138 495.0 600 49.7
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 1.3e-136 491.1 532 53.0
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 2.2e-136 490.3 531 54.8
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 2.2e-136 490.3 566 48.8
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 3.5e-134 483.0 764 42.8
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 1.0e-133 481.5 541 51.2
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 9.6e-132 474.9 583 48.4
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 2.8e-131 473.4 555 49.4
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 5.3e-130 469.2 543 51.4
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 6.9e-130 468.8 565 48.0
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 9.0e-130 468.4 592 48.5
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 4.5e-129 466.1 574 47.4
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 1.3e-128 464.5 542 50.0
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 1.3e-128 464.5 542 50.0
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.3e-128 464.5 569 47.8
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.9e-128 463.4 574 47.4
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 3.8e-128 463.0 583 45.8
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 4.9e-128 462.6 657 44.4
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 1.1e-127 461.5 491 53.4
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 1.2e-126 458.0 611 44.7
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 3.5e-126 456.4 573 47.1
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 6.0e-126 455.7 517 51.1
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 1.3e-125 454.5 737 40.3
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 2.3e-125 453.8 677 41.8
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 5.1e-125 452.6 533 50.5
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 5.6e-124 449.1 540 49.3
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 9.6e-124 448.4 582 46.6
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 9.6e-124 448.4 688 42.4
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 2.1e-123 447.2 553 49.2
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 3.7e-123 446.4 524 49.4
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 3.7e-123 446.4 514 51.4
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 3.7e-123 446.4 568 47.5
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 2.4e-122 443.7 712 40.4
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 3.1e-122 443.4 559 47.9
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 5.3e-122 442.6 551 47.0
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 5.3e-122 442.6 567 47.1
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 1.2e-121 441.4 687 41.8
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 3.4e-121 439.9 562 46.4
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 5.8e-121 439.1 524 49.6
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 7.6e-121 438.7 626 44.2
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 2.2e-120 437.2 527 49.1
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 2.5e-119 433.7 568 46.8
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 2.7e-118 430.3 507 47.5
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.8e-117 427.6 508 47.6
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 2.3e-117 427.2 707 40.0
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 1.1e-116 424.9 675 40.1
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 1.5e-116 424.5 689 41.2
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 1.9e-116 424.1 601 44.8
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 2.5e-116 423.7 566 46.8
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 5.7e-116 422.5 675 39.9
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 2.2e-115 420.6 728 37.5
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 6.3e-115 419.1 567 46.7
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 9.0e-114 415.2 564 46.8
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 9.0e-114 415.2 526 47.7
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 3.6e-110 403.3 838 33.7
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 6.7e-109 399.1 550 46.0
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 1.1e-108 398.3 605 43.6
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 1.1e-108 398.3 434 54.1
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 1.9e-108 397.5 605 43.8
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 1.7e-107 394.4 687 38.4
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 5.0e-104 382.9 420 54.0
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 3.3e-100 370.2 515 43.1
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 2.0e-97 360.9 393 55.0
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 5.9e-97 359.4 744 34.4
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 6.5e-96 355.9 623 38.5
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.8e-93 347.8 453 46.6
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 9.7e-92 342.0 454 48.0
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 3.7e-91 340.1 530 42.8
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 2.0e-84 317.8 203 74.9
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 4.8e-83 313.2 193 77.7
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 3.6e-78 297.0 255 59.2
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 8.0e-78 295.8 448 40.8
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 9.8e-76 288.9 448 40.2
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 6.6e-72 276.2 436 38.8
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 4.4e-68 263.5 226 60.6
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 6.6e-64 249.6 208 63.9
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 1.5e-60 238.4 693 29.6
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 1.5e-60 238.4 196 63.8
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 1.7e-59 235.0 605 31.7
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 1.8e-53 214.9 225 52.0
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 2.6e-52 211.1 207 57.5
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.9e-51 207.6 410 36.3
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 2.9e-43 181.0 164 59.8
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 1.5e-39 168.7 191 44.0
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.2e-38 165.6 125 68.0
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 2.2e-35 154.8 232 42.7
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 5.3e-29 133.7 304 35.5
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 4.4e-28 130.6 233 37.8
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 9.9e-28 129.4 196 38.8
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 9.9e-28 129.4 212 39.6
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 9.9e-28 129.4 212 39.6
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 4.2e-26 124.0 210 41.4
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.5e-23 115.5 102 63.7
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 7.3e-23 113.2 143 47.6
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.1e-21 109.4 80 66.2
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 6.9e-21 106.7 127 44.1
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 1.4e-18 99.0 134 44.0
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 9.3e-18 96.3 59 76.3
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 1.2e-17 95.9 141 40.4
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 4.0e-13 80.9 106 45.3
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 1.5e-12 79.0 48 77.1
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 2.2e-11 75.1 253 27.3
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.9e-11 74.7 268 29.1
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 4.2e-10 70.9 266 24.8
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 5.5e-10 70.5 253 25.7
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 1.6e-09 68.9 49 67.3
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 4.6e-09 67.4 219 27.4
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 4.6e-09 67.4 75 38.7
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 7.9e-09 66.6 158 33.5
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 1.0e-08 66.2 133 30.8
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.3e-08 65.9 262 26.7
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 1.8e-08 65.5 254 24.0
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 1.8e-08 65.5 107 38.3
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 3.9e-08 64.3 54 61.1
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 6.7e-08 63.5 123 35.8
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 8.7e-08 63.2 231 25.1
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 8.7e-08 63.2 231 25.1
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 8.7e-08 63.2 122 36.1
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 1.1e-07 62.8 143 32.2
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 1.1e-07 62.8 226 24.3
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.1e-07 62.8 55 56.4
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 1.9e-07 62.0 226 27.0
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 1.9e-07 62.0 76 43.4
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 1.9e-07 62.0 160 29.4
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 4.3e-07 60.8 200 27.5
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 4.3e-07 60.8 200 27.5
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 4.3e-07 60.8 200 27.5
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 4.3e-07 60.8 309 26.5
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 5.6e-07 60.5 118 35.6
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 7.4e-07 60.1 227 25.6
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 9.6e-07 59.7 226 23.5
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 1.3e-06 59.3 130 29.2
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 1.3e-06 59.3 127 32.3
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 1.6e-06 58.9 124 36.3
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 2.1e-06 58.5 140 32.9
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 2.1e-06 58.5 133 33.8
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 2.1e-06 58.5 233 25.8
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 3.7e-06 57.8 148 30.4
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 3.7e-06 57.8 122 29.5
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 3.7e-06 57.8 117 35.0
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 3.7e-06 57.8 132 34.1
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 4.8e-06 57.4 65 46.2
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 6.2e-06 57.0 133 30.1
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 8.2e-06 56.6 185 30.8
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 8.2e-06 56.6 121 36.4
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 8.2e-06 56.6 96 36.5


User provided reference genes

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