Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 8.7e-148 526.9 266 100.0
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.0e-79 300.8 267 61.0
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.7e-74 283.5 220 66.8
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 3.8e-74 282.3 187 77.5
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.1e-73 280.8 174 79.3
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.9e-73 280.0 198 71.2
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.1e-73 278.9 220 65.9
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 6.2e-69 265.0 186 69.9
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 2.6e-67 259.6 220 60.5
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 1.3e-66 257.3 201 63.2
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 1.4e-65 253.8 190 66.8
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 2.3e-63 246.5 190 65.8
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 7.3e-62 241.5 257 52.5
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 2.8e-61 239.6 219 60.3
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.4e-60 236.5 224 57.1
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 4.0e-60 235.7 218 57.8
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 6.9e-60 235.0 218 57.8
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 5.8e-59 231.9 152 74.3
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 7.6e-59 231.5 177 65.5
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.9e-58 229.6 170 68.8
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 2.9e-58 229.6 180 64.4
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 2.9e-58 229.6 180 64.4
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 3.8e-58 229.2 179 67.6
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 3.8e-58 229.2 179 67.6
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 4.9e-58 228.8 187 65.8
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 6.4e-58 228.4 168 66.7
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 8.4e-58 228.0 198 59.6
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 7.1e-57 224.9 126 84.1
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 9.3e-57 224.6 159 68.6
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 1.6e-56 223.8 211 55.9
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 2.1e-56 223.4 179 63.7
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 6.0e-56 221.9 126 83.3
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 1.8e-55 220.3 172 61.6
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 2.3e-55 219.9 172 65.7
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 3.0e-55 219.5 238 49.6
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 1.1e-54 217.6 152 73.0
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 2.5e-54 216.5 179 62.6
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 7.4e-54 214.9 178 62.9
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 9.6e-54 214.5 155 70.3
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.3e-53 214.2 159 66.7
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.3e-53 214.2 159 66.7
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 2.1e-53 213.4 198 59.6
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 2.8e-53 213.0 156 71.8
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 3.7e-53 212.6 266 51.1
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 4.8e-53 212.2 157 65.0
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 1.4e-52 210.7 160 65.6
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 2.4e-52 209.9 237 51.1
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 4.0e-52 209.1 192 56.2
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 4.0e-52 209.1 156 65.4
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 5.3e-52 208.8 238 53.4
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 6.9e-52 208.4 159 66.7
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 1.2e-51 207.6 258 47.3
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 2.6e-51 206.5 160 66.2
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 2.6e-51 206.5 168 61.9
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 3.4e-51 206.1 245 47.8
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 9.9e-51 204.5 162 64.2
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 1.3e-50 204.1 196 54.6
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 1.7e-50 203.8 169 59.2
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 2.2e-50 203.4 253 50.2
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 3.8e-50 202.6 157 66.2
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 4.2e-49 199.1 166 62.0
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 5.5e-49 198.7 156 67.9
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 9.3e-49 198.0 288 43.1
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 1.2e-48 197.6 199 55.3
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 1.6e-48 197.2 158 65.2
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 2.1e-48 196.8 168 60.1
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 2.7e-48 196.4 167 61.7
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 3.5e-48 196.1 179 59.8
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 3.5e-48 196.1 179 59.8
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 3.5e-48 196.1 179 59.8
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 3.5e-48 196.1 178 59.0
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 4.6e-48 195.7 181 56.9
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 4.6e-48 195.7 177 58.2
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 6.0e-48 195.3 179 59.2
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 6.0e-48 195.3 177 59.9
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 6.0e-48 195.3 177 59.9
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 6.0e-48 195.3 159 65.4
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 6.0e-48 195.3 171 57.3
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 1.0e-47 194.5 177 57.6
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 1.3e-47 194.1 174 59.8
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 1.3e-47 194.1 162 62.3
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 1.3e-47 194.1 169 59.2
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 2.3e-47 193.4 161 60.2
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 3.9e-47 192.6 161 59.6
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 6.7e-47 191.8 161 60.2
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 2.5e-46 189.9 159 61.0
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 2.1e-45 186.8 162 59.9
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 4.8e-45 185.7 159 61.0
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 8.2e-45 184.9 164 60.4
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 1.8e-44 183.7 174 56.3
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 3.1e-44 183.0 121 71.9
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 2.0e-43 180.3 181 53.0
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 4.5e-43 179.1 164 56.7
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.9e-42 176.4 162 56.8
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.9e-42 176.4 162 56.8
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 3.8e-42 176.0 165 55.8
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 1.4e-41 174.1 165 57.0
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 2.5e-41 173.3 127 66.1
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 9.3e-41 171.4 190 51.6
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 1.6e-40 170.6 193 51.3
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 2.1e-40 170.2 223 45.7
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.3e-39 167.5 162 56.8
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 6.7e-39 165.2 162 56.2
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 6.7e-39 165.2 126 71.4
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 1.3e-37 161.0 128 64.1
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 1.6e-37 160.6 177 52.0
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 1.1e-36 157.9 177 52.0
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 5.9e-35 152.1 168 50.0
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 7.6e-35 151.8 178 50.6
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 5.0e-34 149.1 101 75.2
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 9.3e-33 144.8 112 66.1
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 1.5e-30 137.5 102 64.7
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 1.7e-29 134.0 104 64.4
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 2.0e-27 127.1 90 68.9
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.3e-26 124.4 95 64.2
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.4e-25 120.9 187 43.9
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 6.1e-24 115.5 80 66.2
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 2.6e-22 110.2 103 55.3
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 3.0e-15 86.7 88 53.4
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 3.3e-14 83.2 69 58.0
DCAR_004236 Daucus carota HOM05D006505 ORTHO05D008086 2.8e-13 80.1 239 28.9
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 2.0e-11 73.9 120 38.3
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 5.9e-11 72.4 121 34.7
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 7.7e-11 72.0 102 46.1
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 6.5e-10 68.9 46 63.0
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 4.7e-08 62.8 63 49.2
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 6.1e-08 62.4 63 49.2
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 6.1e-08 62.4 63 49.2
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 2.3e-07 60.5 148 35.1
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 2.3e-07 60.5 63 47.6


User provided reference genes

Program Settings