Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 5.5e-62 240.7 116 100.0
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 4.1e-49 198.0 100 91.0
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 1.2e-48 196.4 97 93.8
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 2.0e-48 195.7 97 92.8
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 2.0e-48 195.7 97 92.8
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 2.0e-48 195.7 97 92.8
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 2.0e-48 195.7 97 92.8
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 2.0e-48 195.7 97 92.8
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 2.0e-48 195.7 97 92.8
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 2.0e-48 195.7 97 92.8
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 2.0e-48 195.7 97 92.8
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 2.0e-48 195.7 97 92.8
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 2.0e-48 195.7 97 92.8
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 2.6e-48 195.3 97 93.8
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 2.6e-48 195.3 97 91.8
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 3.4e-48 194.9 97 92.8
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 3.4e-48 194.9 97 93.8
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 3.4e-48 194.9 97 91.8
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 4.5e-48 194.5 97 91.8
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 4.5e-48 194.5 97 91.8
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 4.5e-48 194.5 97 91.8
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 4.5e-48 194.5 97 91.8
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 4.5e-48 194.5 97 91.8
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 4.5e-48 194.5 97 91.8
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 4.5e-48 194.5 97 91.8
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 4.5e-48 194.5 97 92.8
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 4.5e-48 194.5 97 92.8
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 4.5e-48 194.5 97 91.8
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 4.5e-48 194.5 97 92.8
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 5.9e-48 194.1 97 92.8
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 5.9e-48 194.1 97 92.8
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 5.9e-48 194.1 97 91.8
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 5.9e-48 194.1 97 92.8
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 7.7e-48 193.7 97 91.8
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 7.7e-48 193.7 97 91.8
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.0e-47 193.4 97 91.8
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.0e-47 193.4 97 91.8
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 1.0e-47 193.4 97 92.8
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.0e-47 193.4 97 92.8
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.0e-47 193.4 97 92.8
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 1.3e-47 193.0 97 90.7
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 1.3e-47 193.0 97 92.8
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 1.7e-47 192.6 97 90.7
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 1.7e-47 192.6 97 90.7
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 1.7e-47 192.6 97 90.7
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 1.7e-47 192.6 97 90.7
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 1.7e-47 192.6 97 89.7
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 2.2e-47 192.2 97 91.8
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 2.2e-47 192.2 97 91.8
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 2.2e-47 192.2 97 90.7
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 2.2e-47 192.2 97 89.7
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 2.2e-47 192.2 97 90.7
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 2.9e-47 191.8 97 91.8
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 2.9e-47 191.8 97 91.8
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 2.9e-47 191.8 97 91.8
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 2.9e-47 191.8 97 91.8
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 5.0e-47 191.0 97 89.7
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 5.0e-47 191.0 97 88.7
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 6.5e-47 190.7 97 87.6
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 6.5e-47 190.7 97 89.7
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 6.5e-47 190.7 97 92.8
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 8.5e-47 190.3 97 90.7
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 8.5e-47 190.3 97 88.7
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 8.5e-47 190.3 97 90.7
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 8.5e-47 190.3 97 90.7
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 1.1e-46 189.9 97 87.6
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 1.4e-46 189.5 97 87.6
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 1.4e-46 189.5 97 89.7
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.9e-46 189.1 97 86.6
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.9e-46 189.1 97 88.7
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.9e-46 189.1 97 88.7
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 2.5e-46 188.7 97 89.7
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 2.5e-46 188.7 97 89.7
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 3.2e-46 188.3 97 88.7
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 4.2e-46 188.0 97 88.7
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 5.5e-46 187.6 97 88.7
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 5.5e-46 187.6 97 85.6
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 5.5e-46 187.6 97 85.6
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 5.5e-46 187.6 97 85.6
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 7.2e-46 187.2 97 88.7
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 7.2e-46 187.2 97 88.7
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 1.2e-45 186.4 97 84.5
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.2e-45 186.4 97 84.5
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 1.2e-45 186.4 97 86.6
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 2.7e-45 185.3 97 86.6
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 2.7e-45 185.3 97 85.6
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 3.6e-45 184.9 97 85.6
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 3.6e-45 184.9 97 88.7
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 4.6e-45 184.5 104 80.8
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 7.9e-45 183.7 97 85.6
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 1.0e-44 183.3 97 83.5
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 1.0e-44 183.3 97 85.6
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 1.8e-44 182.6 97 83.5
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 1.8e-44 182.6 97 83.5
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 2.3e-44 182.2 97 86.6
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 2.3e-44 182.2 97 86.6
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 3.9e-44 181.4 97 82.5
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 5.1e-44 181.0 108 75.9
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 6.7e-44 180.6 97 82.5
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 6.7e-44 180.6 97 82.5
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 6.7e-44 180.6 97 82.5
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 1.5e-43 179.5 97 81.4
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 1.5e-43 179.5 97 81.4
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 1.5e-43 179.5 97 81.4
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 1.5e-43 179.5 97 81.4
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 1.5e-43 179.5 97 81.4
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 2.5e-43 178.7 101 79.2
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 2.5e-43 178.7 112 73.2
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 9.7e-43 176.8 97 81.4
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 2.8e-42 175.3 97 80.4
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 2.8e-42 175.3 97 84.5
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 2.8e-42 175.3 97 80.4
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 4.1e-41 171.4 94 83.0
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 3.4e-40 168.3 97 78.4
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 3.7e-34 148.3 97 63.9
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 4.8e-34 147.9 97 67.0
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 5.9e-32 141.0 91 71.4
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 1.2e-29 133.3 99 58.6
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 3.9e-28 128.3 91 67.0
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 2.2e-26 122.5 97 68.0
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 3.7e-26 121.7 97 53.6
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 4.8e-26 121.3 60 86.7
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 3.6e-21 105.1 99 50.5
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 4.2e-14 81.6 41 85.4
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 1.8e-12 76.3 53 58.5


User provided reference genes

Program Settings