Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 0.0e+00 2058.1 1063 100.0
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 0.0e+00 1511.1 897 88.2
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.9e-311 1072.0 868 64.4
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 2.6e-296 1022.3 869 62.4
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 2.9e-295 1018.8 872 60.4
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 1.9e-294 1016.1 872 60.7
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 1.2e-293 1013.4 871 62.1
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 5.4e-289 998.0 916 58.7
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 3.6e-285 985.3 869 60.4
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 4.7e-285 984.9 868 59.4
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 2.7e-280 969.1 875 58.9
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 4.5e-280 968.4 870 58.6
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 4.5e-280 968.4 884 58.9
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 1.7e-274 949.9 868 58.1
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 2.3e-268 929.5 869 56.7
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 2.0e-267 926.4 898 56.9
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 2.0e-267 926.4 757 64.3
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 1.4e-265 920.2 871 56.7
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 4.1e-265 918.7 872 57.0
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 1.0e-263 914.1 751 67.9
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 3.3e-262 909.1 868 56.9
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 9.5e-262 907.5 874 56.6
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 5.2e-260 901.7 832 57.7
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.5e-259 900.2 870 56.0
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 3.4e-259 899.0 870 56.4
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 5.4e-257 891.7 871 55.5
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 1.2e-256 890.6 870 56.3
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 1.6e-256 890.2 865 55.5
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 1.1e-254 884.0 948 52.4
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 4.3e-254 882.1 879 54.9
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 1.6e-253 880.2 921 52.8
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 8.1e-253 877.9 869 54.8
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 8.1e-253 877.9 868 55.9
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 1.1e-252 877.5 916 53.7
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 3.1e-252 875.9 882 53.9
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 2.0e-251 873.2 870 54.4
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 2.6e-251 872.8 869 54.4
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 5.4e-249 865.1 872 53.9
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.6e-248 863.6 872 53.8
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 1.0e-247 860.9 896 53.1
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 1.3e-247 860.5 872 53.9
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 2.3e-247 859.8 877 53.5
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 2.3e-247 859.8 870 55.2
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 1.1e-246 857.4 858 55.2
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 9.6e-246 854.4 896 52.3
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 4.4e-243 845.5 898 53.7
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.2e-242 843.2 874 52.7
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 6.4e-242 841.6 950 51.5
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 1.4e-241 840.5 867 53.5
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.4e-241 838.6 874 52.4
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 5.1e-239 832.0 869 52.2
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 9.6e-238 827.8 870 52.4
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 9.6e-238 827.8 847 53.2
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 6.9e-236 821.6 884 52.6
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 3.8e-234 815.8 845 52.5
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 2.7e-232 809.7 874 51.6
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 1.0e-231 807.7 868 53.0
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 5.1e-231 805.4 875 51.4
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.5e-230 803.9 845 51.5
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 4.3e-230 802.4 875 51.7
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 7.4e-230 801.6 870 51.5
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.8e-228 797.0 869 51.3
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 4.5e-227 792.3 845 51.7
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 9.9e-227 791.2 873 50.1
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 6.7e-223 778.5 893 49.8
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 3.7e-221 772.7 843 51.2
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 8.1e-221 771.5 861 49.6
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 3.1e-220 769.6 1318 39.8
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 5.8e-219 765.4 867 50.2
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 1.2e-216 757.7 769 53.7
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 4.6e-216 755.7 868 50.7
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 6.3e-213 745.3 850 49.3
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 2.0e-211 740.3 829 50.8
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.6e-208 729.6 844 47.9
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 7.9e-208 728.4 842 47.9
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 1.9e-206 723.8 879 46.6
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 2.3e-199 700.3 853 45.0
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 9.7e-198 694.9 853 48.7
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 2.2e-197 693.7 881 48.5
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.0e-191 674.9 878 47.6
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.7e-189 667.5 878 47.2
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 8.2e-189 665.2 866 44.8
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.5e-182 644.4 849 45.9
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.7e-181 639.8 870 46.0
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 4.2e-177 626.3 866 44.6
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 1.5e-174 617.8 1370 33.9
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 2.0e-174 617.5 853 44.0
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 2.6e-174 617.1 853 44.0
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 9.8e-174 615.1 859 43.1
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 8.3e-173 612.1 884 42.4
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 2.4e-172 610.5 852 42.8
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 2.0e-171 607.4 847 43.4
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 3.5e-171 606.7 856 43.0
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 3.5e-171 606.7 856 43.0
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 4.5e-171 606.3 849 43.0
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 4.5e-171 606.3 856 43.0
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 1.7e-170 604.4 830 41.9
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 2.2e-170 604.0 849 43.2
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 2.2e-170 604.0 852 42.6
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 1.5e-169 601.3 888 40.9
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 4.2e-169 599.7 878 44.2
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 9.5e-169 598.6 669 51.3
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.8e-168 597.0 854 43.9
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 3.7e-165 586.6 850 42.1
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 9.2e-164 582.0 848 42.3
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 1.0e-162 578.6 869 41.5
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 4.7e-160 569.7 881 40.0
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 4.6e-155 553.1 705 43.5
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 5.9e-155 552.7 524 57.4
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.5e-150 538.1 842 42.4
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 2.6e-150 537.3 873 39.5
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.3e-149 535.0 406 67.7
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.4e-148 531.6 463 60.7
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 6.4e-141 506.1 573 50.3
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.9e-124 451.4 414 56.3
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.4e-116 424.5 330 64.8
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 6.0e-115 419.9 649 41.1
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 1.8e-114 418.3 315 66.0
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 1.9e-100 371.7 356 53.1
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 5.1e-98 363.6 411 48.2
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 5.7e-97 360.1 312 59.9
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 2.5e-92 344.7 388 48.7
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 3.0e-90 337.8 796 30.7
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 2.5e-89 334.7 389 48.6
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 2.8e-88 331.3 815 31.5
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 4.8e-88 330.5 1083 25.9
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 1.0e-85 322.8 411 44.3
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 1.4e-84 318.9 356 50.6
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 2.3e-82 311.6 265 58.9
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.1e-79 301.2 437 41.4
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 2.5e-76 291.6 377 47.2
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 2.2e-72 278.5 393 43.5
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 2.2e-72 278.5 422 41.0
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 3.5e-70 271.2 472 38.3
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 8.5e-69 266.5 620 31.6
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 8.8e-66 256.5 263 52.9
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 2.0e-65 255.4 189 66.1
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 7.5e-57 226.9 350 41.4
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.8e-55 222.2 172 65.7
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.7e-54 218.4 497 33.0
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 1.5e-52 212.6 256 45.7
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 3.0e-50 204.9 172 63.4
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 6.8e-50 203.8 286 40.2
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 4.7e-43 181.0 346 35.3
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 6.8e-42 177.2 365 33.4
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.7e-40 172.6 328 36.3
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 2.9e-40 171.8 469 32.6
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 2.3e-37 162.2 131 61.1
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 2.6e-33 148.7 256 36.7
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 3.4e-33 148.3 119 60.5
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.9e-32 145.2 147 51.0
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 1.2e-30 139.8 128 54.7
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.7e-30 138.7 159 47.8
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 3.0e-29 135.2 198 41.9
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 5.0e-29 134.4 98 65.3
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 7.3e-28 130.6 200 42.5
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 7.3e-28 130.6 157 50.3
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 9.5e-28 130.2 163 45.4
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.6e-27 129.4 81 77.8
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 2.1e-27 129.0 117 60.7
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 4.7e-27 127.9 160 44.4
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.8e-26 125.9 175 42.3
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 5.2e-26 124.4 84 67.9
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.5e-25 122.9 103 65.0
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 2.0e-25 122.5 78 73.1
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 2.2e-24 119.0 142 46.5
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 4.9e-24 117.9 82 67.1
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 4.3e-20 104.8 78 71.8
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 1.8e-18 99.4 92 54.3
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.5e-17 96.3 122 41.8
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 7.6e-17 94.0 99 46.5
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 2.2e-16 92.4 116 47.4
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 1.6e-14 86.3 103 46.6
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 4.0e-10 71.6 56 55.4
Lj9A422T77 Lonicera japonica HOM05D003469 ORTHO05D004084 3.4e-09 68.6 35 91.4
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 5.8e-09 67.8 94 36.2
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 7.6e-09 67.4 55 60.0
Actinidia02458 Actinidia chinensis HOM05D003469 ORTHO05D004084 7.1e-07 60.8 48 64.6
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 1.2e-06 60.1 825 20.6
QL01p054481 Quercus lobata HOM05D003469 ORTHO05D004084 1.2e-06 60.1 48 56.2
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 3.5e-06 58.5 59 45.8
Cc05_g03240 Coffea canephora HOM05D003469 ORTHO05D029064 4.6e-06 58.2 37 70.3
MD17G1140900 Malus domestica HOM05D003469 ORTHO05D004084 6.0e-06 57.8 75 53.3
Cc00_g33310 Coffea canephora HOM05D003469 ORTHO05D029064 7.8e-06 57.4 37 70.3


User provided reference genes

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