Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A92T11 Lonicera japonica HOM05D001538 ORTHO05D006831 1.3e-102 376.3 187 100.0
Lj3P693T50 Lonicera japonica HOM05D001538 ORTHO05D011045 1.2e-34 150.6 79 92.4
Lj9P658T31 Lonicera japonica HOM05D001538 ORTHO05D011045 9.5e-32 141.0 79 88.6
Lj9C654T1 Lonicera japonica HOM05D001538 ORTHO05D234802 3.3e-24 115.9 66 86.4
Lj9C89G5 Lonicera japonica HOM05D002009 ORTHO05D006831 1.2e-15 87.4 62 77.4
Lj9A88T63 Lonicera japonica HOM05D002009 ORTHO05D036486 2.1e-15 86.7 63 74.6
Lju1225A2T63 Lonicera japonica HOM05D002009 ORTHO05D036486 2.1e-15 86.7 63 74.6
Lju1040C0G1 Lonicera japonica HOM05D002009 ORTHO05D006831 4.7e-15 85.5 62 75.8
Lju1225A0T4 Lonicera japonica HOM05D002009 ORTHO05D036486 6.8e-14 81.6 62 72.6
Solyc01g099220.3 Solanum lycopersicum HOM05D002009 ORTHO05D006831 5.8e-13 78.6 75 56.0
Sopen01g042770 Solanum pennellii HOM05D002009 ORTHO05D006831 5.8e-13 78.6 75 56.0
Sopen01g042760 Solanum pennellii HOM05D000208 ORTHO05D000130 1.3e-12 77.4 65 63.1
CSS0012384 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D006831 1.4e-11 73.9 75 53.3
Peaxi162Scf00037g00637 Petunia axillaris HOM05D002009 ORTHO05D006831 1.4e-11 73.9 61 63.9
Sc09g0003130 Simmondsia chinensis HOM05D002009 ORTHO05D006831 1.4e-11 73.9 73 56.2
CiPaw.07G018700 Carya illinoinensis HOM05D002009 ORTHO05D006831 1.9e-11 73.6 90 50.0
Ciclev10003639m.g Citrus clementina HOM05D002009 ORTHO05D006831 1.9e-11 73.6 73 56.2
FvH4_6g06120 Fragaria vesca HOM05D002009 ORTHO05D006831 2.4e-11 73.2 160 36.9
QL03p007353 Quercus lobata HOM05D002009 ORTHO05D006831 2.4e-11 73.2 90 50.0
CSS0006817 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D006831 3.2e-11 72.8 183 37.2
CAN.G1034.31 Capsicum annuum HOM05D002009 ORTHO05D006831 3.2e-11 72.8 75 52.0
Prupe.6G324000 Prunus persica HOM05D002009 ORTHO05D006831 3.2e-11 72.8 81 53.1
ClCG02G015610 Citrullus lanatus HOM05D002009 ORTHO05D006831 4.1e-11 72.4 89 51.7
Sabra13G0024400 Salix brachista HOM05D002009 ORTHO05D006831 4.1e-11 72.4 67 58.2
Thecc.05G301300 Theobroma cacao HOM05D002009 ORTHO05D006831 4.1e-11 72.4 61 65.6
QL03p007751 Quercus lobata HOM05D002009 ORTHO05D006831 5.4e-11 72.0 64 60.9
RcHm_v2.0_Chr3g0455131 Rosa chinensis HOM05D002009 ORTHO05D006831 7.1e-11 71.6 81 53.1
TWI36G1702 Tripterygium wilfordii HOM05D002009 ORTHO05D006831 7.1e-11 71.6 74 52.7
Gohir.A08G210100 Gossypium hirsutum HOM05D002009 ORTHO05D006831 9.2e-11 71.2 61 63.9
Gorai.004G241000 Gossypium raimondii HOM05D002009 ORTHO05D006831 9.2e-11 71.2 61 63.9
Aqoxy2G03070 Aquilegia oxysepala HOM05D002009 ORTHO05D006831 1.2e-10 70.9 68 57.4
Dinv40301 Davidia involucrata HOM05D002009 ORTHO05D006831 1.2e-10 70.9 74 54.1
Manes.09G167800 Manihot esculenta HOM05D002009 ORTHO05D006831 1.2e-10 70.9 60 65.0
Haze_04184 Corylus avellana HOM05D002009 ORTHO05D006831 1.6e-10 70.5 60 63.3
Potri.013G022200 Populus trichocarpa HOM05D002009 ORTHO05D006831 1.6e-10 70.5 60 63.3
Rhsim12G0060600 Rhododendron simsii HOM05D002009 ORTHO05D006831 1.6e-10 70.5 61 62.3
vmacro04986 Vaccinium macrocarpon HOM05D002009 ORTHO05D006831 1.6e-10 70.5 75 50.7
Migut.N02062 Erythranthe guttata HOM05D002009 ORTHO05D006831 2.1e-10 70.1 90 46.7
Sed0001711 Sechium edule HOM05D002009 ORTHO05D006831 4.6e-10 68.9 69 55.1
CANSAT54G3017 Cannabis sativa HOM05D002009 ORTHO05D006831 6.0e-10 68.6 71 57.7
Lsat_1_v5_gn_9_86800 Lactuca sativa HOM05D002009 ORTHO05D006831 6.0e-10 68.6 68 48.5
AUR62000811 Chenopodium quinoa HOM05D002009 ORTHO05D006831 7.8e-10 68.2 85 47.1
ATR0706G256 Amborella trichopoda HOM05D002009 ORTHO05D006831 1.0e-09 67.8 74 51.4
MSTRG.27991 Avicennia marina HOM05D002009 ORTHO05D006831 1.0e-09 67.8 130 40.8
EL10Ac4g09368 Beta vulgaris HOM05D002009 ORTHO05D006831 1.0e-09 67.8 47 68.1
ECA236G3568 Erigeron canadensis HOM05D002009 ORTHO05D006831 1.0e-09 67.8 68 51.5
Cc02_g33310 Coffea canephora HOM05D002009 ORTHO05D006831 1.3e-09 67.4 59 64.4
Nn3g21358 Nelumbo nucifera HOM05D002009 ORTHO05D006831 1.3e-09 67.4 68 55.9
GSVIVG01000087001 Vitis vinifera HOM05D002009 ORTHO05D006831 1.3e-09 67.4 59 62.7
DCAR_001814 Daucus carota HOM05D002009 ORTHO05D006831 1.7e-09 67.0 75 50.7
Atru.chr2.372 Acer truncatum HOM05D002009 ORTHO05D006831 2.3e-09 66.6 60 60.0
AL2G26100 Arabidopsis lyrata HOM05D002009 ORTHO05D006831 2.3e-09 66.6 57 63.2
AUR62005157 Chenopodium quinoa HOM05D002009 ORTHO05D006831 2.3e-09 66.6 60 56.7
PSO170G1195 Papaver somniferum HOM05D002009 ORTHO05D006831 2.3e-09 66.6 69 52.2
AT1G67500 Arabidopsis thaliana HOM05D002009 ORTHO05D006831 3.0e-09 66.2 57 61.4
CsaV3_2G006490 Cucumis sativus L. HOM05D002009 ORTHO05D006831 3.9e-09 65.9 66 56.1
BcaB03g15362 Brassica carinata HOM05D002009 ORTHO05D006831 5.1e-09 65.5 68 51.5
C06p38660 Brassica napus HOM05D002009 ORTHO05D006831 5.1e-09 65.5 64 53.1
MD12G1217900 Malus domestica HOM05D002009 ORTHO05D006831 6.6e-09 65.1 75 49.3
Sp5g22500 Schrenkiella parvula HOM05D002009 ORTHO05D006831 6.6e-09 65.1 64 53.1
SGA_v2.0_scaffold80G25788 Striga asiatica HOM05D002009 ORTHO05D006831 1.1e-08 64.3 65 50.8
A07p32520 Brassica napus HOM05D002009 ORTHO05D006831 1.5e-08 63.9 64 51.6
BolC6t38955H Brassica oleracea HOM05D002009 ORTHO05D006831 1.5e-08 63.9 57 59.6
Glyma.03G237200 Glycine max HOM05D002009 ORTHO05D006831 1.5e-08 63.9 64 53.1
BraA07t30876Z Brassica rapa HOM05D002009 ORTHO05D006831 1.9e-08 63.5 57 59.6
Thhalv10017996m.g Eutrema salsugineum HOM05D002009 ORTHO05D006831 1.9e-08 63.5 57 59.6
Phvul.006G091300 Phaseolus vulgaris HOM05D002009 ORTHO05D006831 3.3e-08 62.8 64 51.6
HanXRQChr15g0469941 Helianthus annuus HOM05D002009 ORTHO05D006831 4.3e-08 62.4 61 55.7
Ah.04g160310 Amaranthus hybridus HOM05D002009 ORTHO05D006831 5.6e-08 62.0 184 29.9
FAN05G0625 Fragaria x ananassa HOM05D002009 ORTHO05D006831 5.6e-08 62.0 48 66.7
CARHR060080 Cardamine hirsuta HOM05D002009 ORTHO05D006831 9.6e-08 61.2 87 46.0
FAN14G2713 Fragaria x ananassa HOM05D002009 ORTHO05D006831 9.6e-08 61.2 48 66.7
Aa31LG2G11690 Aethionema arabicum HOM05D000208 ORTHO05D006831 1.2e-07 60.8 88 46.6
SMO146G0384 Selaginella moellendorffii HOM05D002009 ORTHO05D006831 1.2e-07 60.8 142 35.2
THA.LOC104823729 Tarenaya hassleriana HOM05D002009 ORTHO05D006831 1.2e-07 60.8 60 55.0
TAR633G0909 Trochodendron aralioides HOM05D002009 ORTHO05D006831 1.2e-07 60.8 72 50.0
PSO210G3028 Papaver somniferum HOM05D002009 ORTHO05D006831 1.6e-07 60.5 178 31.5
FAN09G2733 Fragaria x ananassa HOM05D002009 ORTHO05D006831 2.1e-07 60.1 48 64.6
AagrBONN_evm.TU.Sc2ySwM_362.1967 Anthoceros agrestis HOM05D002009 ORTHO05D006831 2.8e-07 59.7 70 45.7
arahy.Tifrunner.gnm1.ann1.UY60S3 Arachis hypogaea HOM05D002009 ORTHO05D006831 2.8e-07 59.7 58 51.7
Carub.0002s1383 Capsella rubella HOM05D002009 ORTHO05D006831 2.8e-07 59.7 57 56.1
Ca_05812_v3 Cicer arietinum L. HOM05D002009 ORTHO05D006831 3.6e-07 59.3 75 45.3
Pp3c2_33440 Physcomitrium patens HOM05D002009 ORTHO05D006831 3.6e-07 59.3 71 45.1
SEGI_14509 Sequoiadendron giganteum HOM05D002009 ORTHO05D006831 3.6e-07 59.3 72 47.2
Mapoly0082s0049 Marchantia polymorpha HOM05D002009 ORTHO05D006831 4.7e-07 58.9 68 45.6
TPR.G33207 Trifolium pratense HOM05D002009 ORTHO05D006831 4.7e-07 58.9 64 50.0
Lalb_Chr18g0045671 Lupinus albus HOM05D002009 ORTHO05D006831 1.1e-06 57.8 57 56.1
Zm00001eb330170 Zea mays HOM05D002009 ORTHO05D006831 1.1e-06 57.8 66 51.5
HPP92_001324 Vanilla planifolia HOM05D002009 ORTHO05D006831 1.4e-06 57.4 46 63.0
Lj5C610T14 Lonicera japonica HOM05D001538 ORTHO05D007090 5.2e-06 55.5 46 58.7
Os07g0669000 Oryza sativa ssp. japonica HOM05D002009 ORTHO05D006831 6.8e-06 55.1 66 48.5
Psat0s2197g0080 Pisum sativum HOM05D002009 ORTHO05D006831 8.9e-06 54.7 145 34.5


User provided reference genes

Program Settings