Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1524.2 726 100.0
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 3.6e-305 1051.2 703 72.5
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 1.4e-301 1039.3 706 71.7
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 3.5e-300 1034.6 708 70.9
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 6.0e-300 1033.9 708 70.9
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 6.0e-300 1033.9 700 71.6
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 1.7e-299 1032.3 700 71.4
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 1.1e-296 1023.1 703 70.4
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 1.4e-296 1022.7 696 71.1
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 9.0e-296 1020.0 695 70.6
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 3.4e-295 1018.1 703 70.0
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 9.9e-295 1016.5 703 69.6
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 1.7e-294 1015.8 717 69.2
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 1.1e-293 1013.1 691 70.6
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 1.9e-293 1012.3 715 69.1
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 5.4e-293 1010.7 706 68.8
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 5.4e-293 1010.7 696 70.3
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 3.0e-291 1005.0 720 67.5
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 3.9e-291 1004.6 704 68.9
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 3.9e-291 1004.6 717 68.2
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 5.1e-291 1004.2 697 69.9
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 6.7e-291 1003.8 695 69.2
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 8.7e-291 1003.4 703 68.8
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 1.5e-290 1002.7 700 69.6
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 1.9e-290 1002.3 717 68.1
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 3.3e-290 1001.5 716 68.0
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 1.3e-289 999.6 702 69.5
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 2.1e-289 998.8 704 68.9
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 3.7e-289 998.0 705 69.2
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 4.8e-289 997.7 701 68.9
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 6.2e-289 997.3 702 69.5
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 6.2e-289 997.3 709 68.5
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 2.4e-288 995.3 702 69.2
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 2.4e-288 995.3 699 68.7
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 5.3e-288 994.2 709 68.4
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 1.2e-287 993.0 704 69.3
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.2e-287 993.0 709 68.5
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 1.5e-287 992.6 707 68.2
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 4.5e-287 991.1 701 68.6
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 1.7e-286 989.2 710 68.5
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 1.7e-286 989.2 698 68.2
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 1.7e-286 989.2 699 68.5
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 1.7e-286 989.2 698 68.8
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 2.2e-286 988.8 697 68.6
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 2.2e-286 988.8 706 67.4
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 2.9e-286 988.4 711 67.8
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 6.5e-286 987.3 702 68.2
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 8.4e-286 986.9 705 67.5
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.1e-285 986.5 690 68.3
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 1.4e-285 986.1 699 67.8
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 1.9e-285 985.7 708 67.2
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 2.5e-285 985.3 690 68.3
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 2.5e-285 985.3 698 68.8
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 3.2e-285 984.9 704 67.8
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 7.1e-285 983.8 690 68.1
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 7.1e-285 983.8 725 67.4
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 9.3e-285 983.4 704 67.8
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 1.2e-284 983.0 705 66.8
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 2.1e-284 982.2 709 67.7
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 2.7e-284 981.9 703 68.1
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 2.7e-284 981.9 694 68.3
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 4.6e-284 981.1 700 68.3
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 4.6e-284 981.1 711 67.8
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 6.0e-284 980.7 701 67.9
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 1.3e-283 979.5 692 67.9
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 1.3e-283 979.5 699 67.0
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 1.8e-283 979.2 704 67.9
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 2.3e-283 978.8 713 67.5
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 5.1e-283 977.6 711 67.7
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 1.5e-282 976.1 706 68.0
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 4.3e-282 974.5 699 67.8
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 9.6e-282 973.4 711 66.2
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 2.8e-281 971.8 701 67.2
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 3.7e-281 971.5 707 67.0
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 3.7e-281 971.5 700 67.1
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 1.4e-280 969.5 696 67.2
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 4.1e-280 968.0 708 66.7
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 6.9e-280 967.2 695 67.5
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 6.9e-280 967.2 711 67.2
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 1.2e-279 966.5 698 65.9
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 1.5e-279 966.1 697 67.1
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 2.0e-279 965.7 704 66.2
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 2.6e-279 965.3 719 66.3
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 5.8e-279 964.1 700 66.9
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 1.3e-278 963.0 699 66.0
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 5.0e-278 961.1 704 66.6
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.1e-277 959.9 706 65.3
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 2.5e-277 958.7 710 66.1
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 7.1e-277 957.2 711 66.0
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 1.2e-276 956.4 704 65.8
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 7.9e-276 953.7 699 65.4
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 1.0e-275 953.4 698 65.9
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 3.9e-275 951.4 712 65.4
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.5e-274 949.5 695 65.5
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 5.7e-274 947.6 703 64.7
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.8e-273 945.3 717 66.1
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 1.8e-272 942.6 720 65.7
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 4.5e-271 937.9 716 63.5
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 1.4e-269 932.9 696 65.2
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 4.2e-269 931.4 698 65.3
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 1.2e-268 929.9 698 66.5
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 6.1e-268 927.5 699 64.5
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 2.3e-267 925.6 693 64.6
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 3.9e-267 924.9 701 63.1
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 2.5e-266 922.2 687 64.8
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 4.3e-266 921.4 706 62.9
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 8.2e-265 917.1 679 65.4
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 3.1e-264 915.2 701 62.8
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 5.0e-262 907.9 687 64.6
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 6.5e-262 907.5 689 63.6
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 8.5e-262 907.1 682 64.1
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 1.1e-261 906.7 687 64.3
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 1.1e-261 906.7 687 64.3
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 5.5e-261 904.4 708 63.1
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 7.2e-261 904.0 683 63.7
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 1.6e-260 902.9 685 63.6
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 2.1e-260 902.5 689 63.7
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 4.4e-258 894.8 681 63.9
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 5.7e-258 894.4 681 64.2
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 3.7e-257 891.7 681 63.9
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 3.5e-255 885.2 682 63.5
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 3.5e-255 885.2 682 63.5
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 6.7e-251 870.9 679 63.0
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 1.0e-243 847.0 730 57.4
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 3.4e-242 842.0 687 61.3
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 5.4e-240 834.7 562 71.0
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 2.7e-231 805.8 682 59.4
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 8.9e-227 790.8 519 74.4
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 3.9e-222 775.4 687 58.1
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 4.4e-202 708.8 569 61.0
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 1.1e-192 677.6 678 50.1
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 3.0e-190 669.5 593 56.2
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 2.4e-176 623.2 635 51.3
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 3.0e-166 589.7 619 49.3
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 4.3e-157 559.3 607 47.4
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 1.1e-149 534.6 619 45.1
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 2.9e-92 344.0 325 58.5
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 4.4e-85 320.1 352 49.4
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 3.6e-71 273.9 284 51.1
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 1.8e-70 271.6 284 50.4
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 6.9e-70 269.6 153 79.7
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.6e-63 248.4 135 80.7
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 5.7e-48 196.8 439 33.7
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 1.5e-40 172.2 519 27.6
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 2.8e-39 167.9 148 56.8
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 2.9e-36 157.9 149 55.7
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.9e-27 128.6 86 69.8
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 1.9e-19 102.1 131 42.0
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 2.7e-18 98.2 119 46.2
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 5.3e-14 84.0 271 27.3
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 2.7e-13 81.6 117 43.6
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 2.9e-12 78.2 89 47.2
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 5.2e-09 67.4 134 29.9
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 4.4e-08 64.3 40 77.5
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 2.8e-07 61.6 48 62.5
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 2.8e-07 61.6 92 40.2


User provided reference genes

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