Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A644T52 Lonicera japonica HOM05D002396 ORTHO05D002779 3.1e-41 171.4 89 100.0
Lsat_1_v5_gn_8_21361 Lactuca sativa HOM05D002396 ORTHO05D002779 2.8e-13 78.6 44 84.1
Lj2A648T13 Lonicera japonica HOM05D002396 ORTHO05D002779 2.8e-13 78.6 41 90.2
ECA233G5435 Erigeron canadensis HOM05D002396 ORTHO05D002779 4.7e-13 77.8 46 80.4
Potri.016G121100 Populus trichocarpa HOM05D002396 ORTHO05D002779 4.7e-13 77.8 37 97.3
Solyc03g122110.1 Solanum lycopersicum HOM05D002396 ORTHO05D002779 4.7e-13 77.8 47 76.6
Sopen03g040900 Solanum pennellii HOM05D002396 ORTHO05D002779 4.7e-13 77.8 47 76.6
Sopen08g001210 Solanum pennellii HOM05D002396 ORTHO05D002779 4.7e-13 77.8 48 79.2
vmacro09706 Vaccinium macrocarpon HOM05D002396 ORTHO05D002779 4.7e-13 77.8 51 74.5
COL.COLO4_31193 Corchorus olitorius HOM05D002396 ORTHO05D002779 8.0e-13 77.0 42 90.5
Pp3c24_6660 Physcomitrium patens HOM05D002396 ORTHO05D002779 8.0e-13 77.0 48 79.2
TAR633G0443 Trochodendron aralioides HOM05D002396 ORTHO05D002779 8.0e-13 77.0 46 82.6
Aa31LG4G1240 Aethionema arabicum HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
Ah.15g096650 Amaranthus hybridus HOM05D002396 ORTHO05D002779 1.0e-12 76.6 41 87.8
MSTRG.17579 Avicennia marina HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
EL10Ac7g15883 Beta vulgaris HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
BcaB05g25214 Brassica carinata HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
BcaC03g15917 Brassica carinata HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
BcaC08g47534 Brassica carinata HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
A02p23050 Brassica napus HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
A07p44760 Brassica napus HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
C02p36800 Brassica napus HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
C06p53580 Brassica napus HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
BolC2t09684H Brassica oleracea HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
BolC6t40374H Brassica oleracea HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
BraA02t07303Z Brassica rapa HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
BraA07t31984Z Brassica rapa HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
CSS0012777 Camellia sinensis var. sinensis HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
CSS0015073 Camellia sinensis var. sinensis HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
Carub.0002s2661 Capsella rubella HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
CARHR073540 Cardamine hirsuta HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
Cfa009729 Carpinus fangiana HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
Ciclev10027820m.g Citrus clementina HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
Migut.N02302 Erythranthe guttata HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
Hma1.2p1_0728F.1_g209280 Hydrangea macrophylla HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
Manes.09G108700 Manihot esculenta HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
Oeu035712.1 Olea europaea HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
Rhsim01G0190300 Rhododendron simsii HOM05D002396 ORTHO05D002779 1.0e-12 76.6 45 84.4
Sabra16G0117000 Salix brachista HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
Sp5g34810 Schrenkiella parvula HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
TWI77G0175 Tripterygium wilfordii HOM05D002396 ORTHO05D002779 1.0e-12 76.6 37 94.6
HanXRQChr12g0370361 Helianthus annuus HOM05D002396 ORTHO05D002779 1.4e-12 76.3 43 83.7
Cpa.g.sc54.54 Carica papaya HOM05D002396 ORTHO05D002779 1.8e-12 75.9 52 76.9
CsaV3_4G024100 Cucumis sativus L. HOM05D002396 ORTHO05D002779 1.8e-12 75.9 50 72.0
Duzib187G0047 Durio zibethinus HOM05D002396 ORTHO05D002779 1.8e-12 75.9 42 88.1
Duzib212G0403 Durio zibethinus HOM05D002396 ORTHO05D002779 1.8e-12 75.9 42 88.1
Gohir.A03G088400 Gossypium hirsutum HOM05D002396 ORTHO05D002779 1.8e-12 75.9 42 88.1
Gohir.D02G110100 Gossypium hirsutum HOM05D002396 ORTHO05D002779 1.8e-12 75.9 42 88.1
Gorai.005G123200 Gossypium raimondii HOM05D002396 ORTHO05D002779 1.8e-12 75.9 42 88.1
Sed0019733 Sechium edule HOM05D002396 ORTHO05D002779 1.8e-12 75.9 45 77.8
Solyc08g005190.4 Solanum lycopersicum HOM05D002396 ORTHO05D002779 1.8e-12 75.9 47 78.7
SGA_v2.0_scaffold3G01533 Striga asiatica HOM05D002396 ORTHO05D002779 1.8e-12 75.9 37 91.9
HPP92_016402 Vanilla planifolia HOM05D002396 ORTHO05D002779 1.8e-12 75.9 47 78.7
Zm00001eb410000 Zea mays HOM05D002396 ORTHO05D002779 1.8e-12 75.9 46 82.6
Atru.chr5.3018 Acer truncatum HOM05D002396 ORTHO05D002779 2.3e-12 75.5 37 91.9
Actinidia01683 Actinidia chinensis HOM05D002396 ORTHO05D002779 2.3e-12 75.5 37 91.9
Aqoxy1G00299 Aquilegia oxysepala HOM05D002396 ORTHO05D002779 2.3e-12 75.5 46 76.1
CANSAT64G2151 Cannabis sativa HOM05D002396 ORTHO05D002779 2.3e-12 75.5 44 79.5
CAN.G137.2 Capsicum annuum HOM05D002396 ORTHO05D002779 2.3e-12 75.5 45 80.0
CiPaw.14G121200 Carya illinoinensis HOM05D002396 ORTHO05D002779 2.3e-12 75.5 37 91.9
AUR62036242 Chenopodium quinoa HOM05D002396 ORTHO05D002779 2.3e-12 75.5 40 87.5
DCAR_011585 Daucus carota HOM05D002396 ORTHO05D002779 2.3e-12 75.5 37 91.9
Eucgr.J00793 Eucalyptus grandis HOM05D002396 ORTHO05D002779 2.3e-12 75.5 37 91.9
Manes.08G094900 Manihot esculenta HOM05D002396 ORTHO05D002779 2.3e-12 75.5 37 91.9
Medtr3g434840 Medicago truncatula HOM05D002396 ORTHO05D002779 2.3e-12 75.5 37 91.9
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 2.3e-12 75.5 45 80.0
Nitab4.5_0002778g0020 Nicotiana tabacum HOM05D002396 ORTHO05D002779 2.3e-12 75.5 45 80.0
Oeu055804.1 Olea europaea HOM05D002396 ORTHO05D002779 2.3e-12 75.5 49 79.6
PSO675G8719 Papaver somniferum HOM05D002396 ORTHO05D002779 2.3e-12 75.5 37 91.9
PSO732G0266 Papaver somniferum HOM05D002396 ORTHO05D002779 2.3e-12 75.5 37 91.9
PSO732G0489 Papaver somniferum HOM05D002396 ORTHO05D002779 2.3e-12 75.5 37 91.9
Peaxi162Scf00045g00141 Petunia axillaris HOM05D002396 ORTHO05D002779 2.3e-12 75.5 45 80.0
PGR119G1899 Punica granatum HOM05D002396 ORTHO05D002779 2.3e-12 75.5 37 91.9
QL01p005537 Quercus lobata HOM05D002396 ORTHO05D002779 2.3e-12 75.5 37 91.9
SalBow3G0072 Salvia bowleyana HOM05D002396 ORTHO05D002779 2.3e-12 75.5 45 80.0
Hund22070 Selenicereus undatus HOM05D002396 ORTHO05D002779 2.3e-12 75.5 37 91.9
SGA_v2.0_scaffold3G01551 Striga asiatica HOM05D002396 ORTHO05D002779 2.3e-12 75.5 37 89.2
THA.LOC104813591 Tarenaya hassleriana HOM05D002396 ORTHO05D002779 2.3e-12 75.5 37 91.9
Thecc.01G386000 Theobroma cacao HOM05D002396 ORTHO05D002779 2.3e-12 75.5 37 91.9
CAN.G1126.12 Capsicum annuum HOM05D002396 ORTHO05D002779 3.0e-12 75.1 49 73.5
Os12g0256300 Oryza sativa ssp. japonica HOM05D002396 ORTHO05D002779 3.0e-12 75.1 45 84.4
RcHm_v2.0_Chr5g0077291 Rosa chinensis HOM05D002396 ORTHO05D002779 3.0e-12 75.1 46 73.9
arahy.Tifrunner.gnm1.ann1.6Y08YU Arachis hypogaea HOM05D002396 ORTHO05D002779 4.0e-12 74.7 37 89.2
arahy.Tifrunner.gnm1.ann1.7S1CUY Arachis hypogaea HOM05D002396 ORTHO05D002779 4.0e-12 74.7 37 89.2
BcaB02g07238 Brassica carinata HOM05D002396 ORTHO05D002779 4.0e-12 74.7 37 91.9
BcaC08g45348 Brassica carinata HOM05D002396 ORTHO05D002779 4.0e-12 74.7 37 91.9
A07p26940 Brassica napus HOM05D002396 ORTHO05D002779 4.0e-12 74.7 37 91.9
C06p29620 Brassica napus HOM05D002396 ORTHO05D002779 4.0e-12 74.7 37 91.9
BolC6t38127H Brassica oleracea HOM05D002396 ORTHO05D002779 4.0e-12 74.7 37 91.9
BraA07t30339Z Brassica rapa HOM05D002396 ORTHO05D002779 4.0e-12 74.7 37 91.9
CiPaw.13G163900 Carya illinoinensis HOM05D002396 ORTHO05D002779 4.0e-12 74.7 50 70.0
ClCG02G023410 Citrullus lanatus HOM05D002396 ORTHO05D002779 4.0e-12 74.7 37 89.2
Thhalv10018086m.g Eutrema salsugineum HOM05D002396 ORTHO05D002779 4.0e-12 74.7 37 91.9
FAN25G3119 Fragaria x ananassa HOM05D002396 ORTHO05D002779 4.0e-12 74.7 37 91.9
MD03G1023500 Malus domestica HOM05D002396 ORTHO05D002779 4.0e-12 74.7 37 91.9
Prupe.6G022700 Prunus persica HOM05D002396 ORTHO05D002779 4.0e-12 74.7 37 91.9
QL01p005503 Quercus lobata HOM05D002396 ORTHO05D002779 4.0e-12 74.7 43 81.4
Sopen04g033500 Solanum pennellii HOM05D002396 ORTHO05D002779 4.0e-12 74.7 37 91.9
TWI53G1590 Tripterygium wilfordii HOM05D002396 ORTHO05D002779 4.0e-12 74.7 37 91.9
AL2G40450 Arabidopsis lyrata HOM05D002396 ORTHO05D002779 5.2e-12 74.3 37 91.9
Ca_26289_v3 Cicer arietinum L. HOM05D002396 ORTHO05D002779 5.2e-12 74.3 37 89.2
Cc01_g04700 Coffea canephora HOM05D002396 ORTHO05D002779 5.2e-12 74.3 45 77.8
Glyma.08G302400 Glycine max HOM05D002396 ORTHO05D002779 5.2e-12 74.3 37 89.2
Glyma.13G178100 Glycine max HOM05D002396 ORTHO05D002779 5.2e-12 74.3 37 89.2
Glyma.18G117500 Glycine max HOM05D002396 ORTHO05D002779 5.2e-12 74.3 37 89.2
Lj6g0001394 Lotus japonicus HOM05D002396 ORTHO05D002779 5.2e-12 74.3 37 89.2
Phvul.006G029300 Phaseolus vulgaris HOM05D002396 ORTHO05D002779 5.2e-12 74.3 37 89.2
Phvul.006G191000 Phaseolus vulgaris HOM05D002396 ORTHO05D002779 5.2e-12 74.3 37 89.2
Psat0s3534g0040 Pisum sativum HOM05D002396 ORTHO05D002779 5.2e-12 74.3 37 89.2
Sc09g0000540 Simmondsia chinensis HOM05D002396 ORTHO05D002779 5.2e-12 74.3 37 89.2
VMungo0540G0651 Vigna mungo HOM05D002396 ORTHO05D002779 5.2e-12 74.3 37 89.2
CDE07G0369 Ceratophyllum demersum HOM05D002396 ORTHO05D002779 6.8e-12 73.9 37 89.2
AUR62012616 Chenopodium quinoa HOM05D002396 ORTHO05D002779 6.8e-12 73.9 50 74.0
Thhalv10023142m.g Eutrema salsugineum HOM05D002396 ORTHO05D002779 6.8e-12 73.9 63 66.7
Nitab4.5_0001477g0090 Nicotiana tabacum HOM05D002396 ORTHO05D002779 6.8e-12 73.9 56 69.6
unitig_699.g19131 Utricularia gibba HOM05D002396 ORTHO05D002779 6.8e-12 73.9 46 73.9
MELO3C014611.2 Cucumis melo HOM05D002396 ORTHO05D002779 8.9e-12 73.6 45 75.6
MD11G1028600 Malus domestica HOM05D002396 ORTHO05D002779 8.9e-12 73.6 37 89.2
SHI32650 Sapria himalayana HOM05D002396 ORTHO05D002779 8.9e-12 73.6 49 71.4
Sed0022440 Sechium edule HOM05D002396 ORTHO05D002779 8.9e-12 73.6 42 83.3
SEGI_07881 Sequoiadendron giganteum HOM05D002396 ORTHO05D002779 8.9e-12 73.6 50 72.0
Solyc04g079920.4 Solanum lycopersicum HOM05D002396 ORTHO05D002779 8.9e-12 73.6 45 77.8
PGSC0003DMG400027846 Solanum tuberosum HOM05D002396 ORTHO05D002779 8.9e-12 73.6 45 77.8
TPR.G8496 Trifolium pratense HOM05D002396 ORTHO05D002779 8.9e-12 73.6 37 89.2
Lalb_Chr18g0061001 Lupinus albus HOM05D002396 ORTHO05D002779 1.2e-11 73.2 37 86.5
Lalb_Chr20g0123641 Lupinus albus HOM05D002396 ORTHO05D002779 1.2e-11 73.2 37 86.5
MBI15_g08972_MAGBIO Magnolia biondii HOM05D002396 ORTHO05D002779 1.2e-11 73.2 43 81.4
MBI15_g46542_MAGBIO Magnolia biondii HOM05D002396 ORTHO05D002779 1.2e-11 73.2 43 81.4
PGSC0003DMG400022902 Solanum tuberosum HOM05D002396 ORTHO05D002779 1.2e-11 73.2 56 66.1
AT1G80930 Arabidopsis thaliana HOM05D002396 ORTHO05D002779 1.5e-11 72.8 37 89.2
FvH4_3g43240 Fragaria vesca HOM05D002396 ORTHO05D002779 1.5e-11 72.8 49 75.5
FAN11G2216 Fragaria x ananassa HOM05D002396 ORTHO05D002779 1.5e-11 72.8 49 75.5
FAN16G2660 Fragaria x ananassa HOM05D002396 ORTHO05D002779 1.5e-11 72.8 51 74.5
FAN21G1898 Fragaria x ananassa HOM05D002396 ORTHO05D002779 1.5e-11 72.8 49 75.5
Mapoly0072s0074 Marchantia polymorpha HOM05D002396 ORTHO05D002779 1.5e-11 72.8 37 86.5
QL01p005459 Quercus lobata HOM05D002396 ORTHO05D002779 1.5e-11 72.8 37 86.5
Nitab4.5_0000244g0400 Nicotiana tabacum HOM05D002396 ORTHO05D002779 2.0e-11 72.4 46 76.1
Solyc03g116050.1 Solanum lycopersicum HOM05D002396 ORTHO05D002779 2.6e-11 72.0 48 77.1
AagrBONN_evm.TU.Sc2ySwM_228.5139 Anthoceros agrestis HOM05D002396 ORTHO05D002779 3.4e-11 71.6 50 72.0
Dinv08040 Davidia involucrata HOM05D002396 ORTHO05D002779 3.4e-11 71.6 46 71.7
Phvul.003G039000 Phaseolus vulgaris HOM05D002396 ORTHO05D002779 3.4e-11 71.6 37 86.5
SMO119G0042 Selaginella moellendorffii HOM05D002396 ORTHO05D002779 3.4e-11 71.6 47 72.3
Eucgr.J01046 Eucalyptus grandis HOM05D002396 ORTHO05D002779 7.5e-11 70.5 35 91.4
MCO02G440 Micromonas commoda HOM05D002396 ORTHO05D002779 9.8e-11 70.1 52 69.2
Lj2C647T6 Lonicera japonica HOM05D002396 ORTHO05D002779 1.3e-10 69.7 38 86.8
Sopen03g035040 Solanum pennellii HOM05D002396 ORTHO05D002779 1.3e-10 69.7 48 75.0
CBR_g25966 Chara braunii HOM05D002396 ORTHO05D002779 1.7e-10 69.3 37 81.1
EL10Ac3g05714 Beta vulgaris HOM05D002396 ORTHO05D002779 2.2e-10 68.9 37 86.5
FAN11G1601 Fragaria x ananassa HOM05D002396 ORTHO05D002779 8.3e-10 67.0 43 79.1
FAN21G4049 Fragaria x ananassa HOM05D002396 ORTHO05D002779 8.3e-10 67.0 43 79.1
LjContig00141g0022467 Lotus japonicus HOM05D002396 ORTHO05D002779 8.3e-10 67.0 36 83.3
FAN16G0907 Fragaria x ananassa HOM05D002396 ORTHO05D002779 1.1e-09 66.6 57 66.7
Sed0023269 Sechium edule HOM05D002396 ORTHO05D002779 1.4e-09 66.2 37 78.4
Hma1.2p1_1553F.1_g290290 Hydrangea macrophylla HOM05D002396 ORTHO05D002779 1.8e-09 65.9 32 93.8
FAN25G2878 Fragaria x ananassa HOM05D002396 ORTHO05D002779 2.4e-09 65.5 48 70.8
CAN.G504.73 Capsicum annuum HOM05D002396 ORTHO05D002779 3.1e-09 65.1 46 71.7
Lsat_1_v5_gn_8_21381 Lactuca sativa HOM05D002396 ORTHO05D002779 5.4e-09 64.3 44 72.7
FvH4_3g43230 Fragaria vesca HOM05D002396 ORTHO05D002779 7.0e-09 63.9 43 76.7
Peaxi162Scf00000g00752 Petunia axillaris HOM05D002396 ORTHO05D002779 7.0e-09 63.9 50 66.0
Nitab4.5_0005609g0030 Nicotiana tabacum HOM05D002396 ORTHO05D002779 9.2e-09 63.5 30 96.7
AL8G24280 Arabidopsis lyrata HOM05D002396 ORTHO05D002779 2.0e-08 62.4 30 93.3
ECA238G4064 Erigeron canadensis HOM05D002396 ORTHO05D002779 3.5e-08 61.6 62 59.7
FvH4_3g01450 Fragaria vesca HOM05D002396 ORTHO05D002779 5.9e-08 60.8 37 73.0
COL.COLO4_22130 Corchorus olitorius HOM05D002396 ORTHO05D002779 7.8e-08 60.5 30 90.0
Migut.J00785 Erythranthe guttata HOM05D002396 ORTHO05D002779 7.8e-08 60.5 36 69.4
CAN.G504.36 Capsicum annuum HOM05D002396 ORTHO05D002779 1.0e-07 60.1 53 66.0
COL.COLO4_26808 Corchorus olitorius HOM05D002396 ORTHO05D002779 1.7e-07 59.3 30 86.7
Migut.J00075 Erythranthe guttata HOM05D002396 ORTHO05D002779 1.7e-07 59.3 40 67.5
Carub.0008s0985 Capsella rubella HOM05D002396 ORTHO05D002779 2.9e-07 58.5 58 58.6
Cfa024861 Carpinus fangiana HOM05D002396 ORTHO05D002779 2.9e-07 58.5 45 62.2
FAN21G3852 Fragaria x ananassa HOM05D002396 ORTHO05D002779 2.9e-07 58.5 46 56.5
FAN25G2780 Fragaria x ananassa HOM05D002396 ORTHO05D002779 3.9e-07 58.2 37 70.3
Nn2g12157 Nelumbo nucifera HOM05D002396 ORTHO05D002779 5.0e-07 57.8 28 89.3
Rhsim01G0194600 Rhododendron simsii HOM05D002396 ORTHO05D002779 5.0e-07 57.8 36 66.7
HanXRQChr08g0219401 Helianthus annuus HOM05D002396 ORTHO05D002779 6.6e-07 57.4 46 65.2
HanXRQChr08g0219451 Helianthus annuus HOM05D002396 ORTHO05D002779 6.6e-07 57.4 46 65.2
Cc09_g03580 Coffea canephora HOM05D002396 ORTHO05D002779 1.9e-06 55.8 57 52.6
Rhsim01G0190700 Rhododendron simsii HOM05D002396 ORTHO05D002779 2.5e-06 55.5 37 67.6
PRCOL_00000882 Prasinoderma coloniale HOM05D002396 ORTHO05D002779 3.3e-06 55.1 62 48.4
Peaxi162Scf00016g03343 Petunia axillaris HOM05D002396 ORTHO05D002779 5.6e-06 54.3 52 59.6
MBI15_g40105_MAGBIO Magnolia biondii HOM05D002396 ORTHO05D002779 7.3e-06 53.9 31 80.6
RcHm_v2.0_Chr5g0077281 Rosa chinensis HOM05D002396 ORTHO05D002779 7.3e-06 53.9 26 92.3


User provided reference genes

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