Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A629T102 Lonicera japonica HOM05D006647 ORTHO05D008232 4.4e-129 464.5 222 100.0
Dinv09377 Davidia involucrata HOM05D006647 ORTHO05D008232 7.9e-102 374.0 208 84.6
Hma1.2p1_0929F.1_g237940 Hydrangea macrophylla HOM05D006647 ORTHO05D008232 2.2e-99 365.9 211 81.5
Potri.009G064500 Populus trichocarpa HOM05D006647 ORTHO05D008232 1.2e-97 360.1 217 82.0
Manes.07G004100 Manihot esculenta HOM05D006647 ORTHO05D008232 1.0e-96 357.1 210 81.0
Nn2g15502 Nelumbo nucifera HOM05D006647 ORTHO05D008232 1.7e-96 356.3 207 82.6
Sabra09G0047700 Salix brachista HOM05D006647 ORTHO05D008232 2.2e-96 355.9 209 83.3
FvH4_7g00690 Fragaria vesca HOM05D006647 ORTHO05D008232 1.9e-95 352.8 215 78.1
GSVIVG01032057001 Vitis vinifera HOM05D006647 ORTHO05D008232 2.5e-95 352.4 205 80.5
FAN06G3601 Fragaria x ananassa HOM05D006647 ORTHO05D008232 5.5e-95 351.3 209 79.9
FAN10G4164 Fragaria x ananassa HOM05D006647 ORTHO05D008232 5.5e-95 351.3 209 79.9
Haze_03236 Corylus avellana HOM05D006647 ORTHO05D008232 1.2e-94 350.1 201 83.1
FAN03G0714 Fragaria x ananassa HOM05D006647 ORTHO05D008232 2.1e-94 349.4 215 77.2
Ciclev10032303m.g Citrus clementina HOM05D006647 ORTHO05D008232 3.6e-94 348.6 221 75.1
Thecc.01G413900 Theobroma cacao HOM05D006647 ORTHO05D008232 3.6e-94 348.6 208 77.9
Peaxi162Scf00428g00819 Petunia axillaris HOM05D006647 ORTHO05D008232 4.6e-94 348.2 201 80.1
Glyma.08G152700 Glycine max HOM05D006647 ORTHO05D008232 6.1e-94 347.8 204 80.9
Cfa010738 Carpinus fangiana HOM05D006647 ORTHO05D008232 7.9e-94 347.4 211 80.1
TAR633G0758 Trochodendron aralioides HOM05D006647 ORTHO05D008232 1.0e-93 347.1 213 79.8
Atru.chr11.2639 Acer truncatum HOM05D006647 ORTHO05D008232 2.3e-93 345.9 208 78.4
CiPaw.13G002900 Carya illinoinensis HOM05D006647 ORTHO05D008232 3.0e-93 345.5 211 80.6
Carub.0005s3017 Capsella rubella HOM05D006647 ORTHO05D008232 3.9e-93 345.1 221 71.9
PSO339G5555 Papaver somniferum HOM05D006647 ORTHO05D008232 3.9e-93 345.1 212 76.4
arahy.Tifrunner.gnm1.ann1.K7GJAS Arachis hypogaea HOM05D006647 ORTHO05D008232 5.1e-93 344.7 216 76.4
CsaV3_7G031240 Cucumis sativus L. HOM05D006647 ORTHO05D008232 5.1e-93 344.7 213 77.5
THA.LOC104801981 Tarenaya hassleriana HOM05D006647 ORTHO05D008232 6.7e-93 344.4 210 77.1
arahy.Tifrunner.gnm1.ann1.BH4E67 Arachis hypogaea HOM05D006647 ORTHO05D008232 8.8e-93 344.0 211 77.7
Lj5g0023478 Lotus japonicus HOM05D006647 ORTHO05D008232 1.1e-92 343.6 209 76.1
AL5G46420 Arabidopsis lyrata HOM05D006647 ORTHO05D008232 1.5e-92 343.2 207 75.8
Lalb_Chr25g0283211 Lupinus albus HOM05D006647 ORTHO05D008232 2.0e-92 342.8 203 77.8
RcHm_v2.0_Chr1g0314911 Rosa chinensis HOM05D006647 ORTHO05D008232 2.0e-92 342.8 212 77.8
Nitab4.5_0011905g0020 Nicotiana tabacum HOM05D006647 ORTHO05D008232 2.5e-92 342.4 201 77.6
DCAR_006301 Daucus carota HOM05D006647 ORTHO05D008232 3.3e-92 342.0 214 77.1
TPR.G12287 Trifolium pratense HOM05D006647 ORTHO05D008232 3.3e-92 342.0 210 76.7
Medtr3g027870 Medicago truncatula HOM05D006647 ORTHO05D008232 4.3e-92 341.7 204 78.9
Psat5g204920 Pisum sativum HOM05D006647 ORTHO05D008232 4.3e-92 341.7 210 77.1
QL04p005221 Quercus lobata HOM05D006647 ORTHO05D008232 4.3e-92 341.7 234 73.9
MSTRG.5006 Avicennia marina HOM05D006647 ORTHO05D008232 9.7e-92 340.5 223 74.4
VMungo1080G0119 Vigna mungo HOM05D006647 ORTHO05D008232 1.7e-91 339.7 205 80.0
Phvul.005G036700 Phaseolus vulgaris HOM05D006647 ORTHO05D008232 2.2e-91 339.3 204 79.4
TWI73G0313 Tripterygium wilfordii HOM05D006647 ORTHO05D008232 2.2e-91 339.3 202 80.7
AT5G26880 Arabidopsis thaliana HOM05D006647 ORTHO05D008232 2.8e-91 339.0 207 74.9
Sp1g00030 Schrenkiella parvula HOM05D006647 ORTHO05D008232 2.8e-91 339.0 202 76.2
Sp5g00020 Schrenkiella parvula HOM05D006647 ORTHO05D008232 2.8e-91 339.0 202 76.2
Actinidia20680 Actinidia chinensis HOM05D006647 ORTHO05D008232 3.7e-91 338.6 206 79.6
MD07G1006600 Malus domestica HOM05D006647 ORTHO05D008232 4.8e-91 338.2 202 79.7
Nitab4.5_0001542g0050 Nicotiana tabacum HOM05D006647 ORTHO05D008232 1.1e-90 337.0 201 77.1
HanXRQChr01g0017301 Helianthus annuus HOM05D006647 ORTHO05D008232 1.4e-90 336.7 204 78.9
Prupe.2G009700 Prunus persica HOM05D006647 ORTHO05D008232 1.4e-90 336.7 216 75.9
PSO384G2587 Papaver somniferum HOM05D006647 ORTHO05D008232 5.3e-90 334.7 206 76.7
Sc11g0009300 Simmondsia chinensis HOM05D006647 ORTHO05D008232 6.9e-90 334.3 208 76.0
BcaC01g03971 Brassica carinata HOM05D006647 ORTHO05D008232 9.1e-90 334.0 203 76.4
Solyc01g086900.4 Solanum lycopersicum HOM05D006647 ORTHO05D008232 1.2e-89 333.6 188 81.4
Sopen01g033910 Solanum pennellii HOM05D006647 ORTHO05D008232 1.2e-89 333.6 188 81.4
Thhalv10006150m.g Eutrema salsugineum HOM05D006647 ORTHO05D008232 2.0e-89 332.8 222 69.4
AUR62009372 Chenopodium quinoa HOM05D006647 ORTHO05D008232 2.6e-89 332.4 217 71.0
CARHR291410 Cardamine hirsuta HOM05D006647 ORTHO05D008232 7.7e-89 330.9 221 71.5
CSS0029691 Camellia sinensis var. sinensis HOM05D006647 ORTHO05D008232 1.3e-88 330.1 215 76.7
Sed0007518 Sechium edule HOM05D006647 ORTHO05D008232 3.8e-88 328.6 214 73.8
BraA03t12997Z Brassica rapa HOM05D006647 ORTHO05D008232 1.4e-87 326.6 195 77.9
CANSAT01G0516 Cannabis sativa HOM05D006647 ORTHO05D008232 1.4e-87 326.6 207 75.8
Eucgr.G03394 Eucalyptus grandis HOM05D006647 ORTHO05D008232 7.2e-87 324.3 217 73.7
HPP92_015763 Vanilla planifolia HOM05D006647 ORTHO05D008232 1.6e-86 323.2 198 77.8
Cc02_g28430 Coffea canephora HOM05D006647 ORTHO05D008232 2.1e-86 322.8 175 84.0
A03p38460 Brassica napus HOM05D006647 ORTHO05D008232 2.7e-86 322.4 185 80.0
C03p46630 Brassica napus HOM05D006647 ORTHO05D008232 4.7e-86 321.6 185 80.0
BolC3t16926H Brassica oleracea HOM05D006647 ORTHO05D008232 4.7e-86 321.6 185 80.0
Duzib138G0958 Durio zibethinus HOM05D006647 ORTHO05D008232 4.7e-86 321.6 208 74.5
ATR0605G070 Amborella trichopoda HOM05D006647 ORTHO05D008232 2.0e-84 316.2 209 70.3
Gorai.004G174000 Gossypium raimondii HOM05D006647 ORTHO05D008232 4.4e-84 315.1 206 73.8
Gohir.A08G145600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 9.7e-84 313.9 187 78.1
COL.COLO4_23898 Corchorus olitorius HOM05D006647 ORTHO05D008232 1.3e-83 313.5 208 73.1
EL10Ac2g04310 Beta vulgaris HOM05D006647 ORTHO05D008232 3.7e-83 312.0 206 71.8
Gohir.D08G166600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 3.7e-83 312.0 187 77.5
MSTRG.5008 Avicennia marina HOM05D006647 ORTHO05D008232 2.4e-82 309.3 222 68.0
Hund20080 Selenicereus undatus HOM05D006647 ORTHO05D008232 2.4e-82 309.3 218 71.1
Migut.N01481 Erythranthe guttata HOM05D006647 ORTHO05D008232 2.0e-81 306.2 204 72.5
MBI01_g36432_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 2.6e-81 305.8 211 69.7
Lsat_1_v5_gn_1_109441 Lactuca sativa HOM05D006647 ORTHO05D008232 2.2e-80 302.8 211 73.0
Migut.O00562 Erythranthe guttata HOM05D006647 ORTHO05D008232 1.5e-79 300.1 176 78.4
ClCG09G004320 Citrullus lanatus HOM05D006647 ORTHO05D008232 1.6e-78 296.6 213 68.1
Rhsim01G0130800 Rhododendron simsii HOM05D006647 ORTHO05D008232 4.7e-78 295.0 297 55.6
unitig_0.g1579 Utricularia gibba HOM05D006647 ORTHO05D008232 1.0e-77 293.9 213 68.1
SalBow4G2297 Salvia bowleyana HOM05D006647 ORTHO05D008232 5.2e-77 291.6 174 78.7
SGA_v2.0_scaffold4G02252 Striga asiatica HOM05D006647 ORTHO05D008232 1.5e-71 273.5 222 62.6
CDE06G2349 Ceratophyllum demersum HOM05D006647 ORTHO05D008232 1.5e-68 263.5 160 75.6
MBI04_g14259_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 2.8e-67 259.2 213 62.4
AUR62023053 Chenopodium quinoa HOM05D006647 ORTHO05D008232 3.7e-67 258.8 213 60.6
Mapoly0078s0003 Marchantia polymorpha HOM05D006647 ORTHO05D008232 1.4e-66 256.9 213 56.8
A03p38500 Brassica napus HOM05D006647 ORTHO05D008232 2.1e-62 243.0 139 80.6
Pp3c8_11960 Physcomitrium patens HOM05D006647 ORTHO05D008232 1.4e-61 240.4 199 57.8
ECA248G3327 Erigeron canadensis HOM05D006647 ORTHO05D008232 1.8e-61 240.0 138 81.2
AagrBONN_evm.TU.Sc2ySwM_362.154 Anthoceros agrestis HOM05D006647 ORTHO05D008232 2.6e-60 236.1 159 69.2
vmacro21178 Vaccinium macrocarpon HOM05D006647 ORTHO05D008232 4.1e-58 228.8 253 52.6
SMO351G0607 Selaginella moellendorffii HOM05D006647 ORTHO05D008232 2.0e-57 226.5 157 66.2
Pp3c23_8130 Physcomitrium patens HOM05D006647 ORTHO05D008232 7.7e-57 224.6 168 61.9
MELO3C023534.2 Cucumis melo HOM05D006647 ORTHO05D008232 2.3e-56 223.0 134 76.1
CBR_g41537 Chara braunii HOM05D006647 ORTHO05D008232 2.9e-56 222.6 157 66.9
PGSC0003DMG400006881 Solanum tuberosum HOM05D006647 ORTHO05D008232 5.4e-50 201.8 113 78.8
Os08g0506500 Oryza sativa ssp. japonica HOM05D006647 ORTHO05D008232 4.6e-49 198.7 220 51.4
QL04p005246 Quercus lobata HOM05D000030 ORTHO05D008232 1.1e-47 194.1 161 63.4
FAN01G1843 Fragaria x ananassa HOM05D006647 ORTHO05D008232 8.0e-46 188.0 122 73.8
FAN01G0876 Fragaria x ananassa HOM05D006647 ORTHO05D008232 5.2e-45 185.3 122 73.0
Cpa.g.sc234.12 Carica papaya HOM05D006647 ORTHO05D008232 8.9e-45 184.5 110 77.3
PGR031G3323 Punica granatum HOM05D006647 ORTHO05D008232 8.9e-45 184.5 183 57.9
Oeu010354.1 Olea europaea HOM05D006647 ORTHO05D008232 2.0e-44 183.3 110 80.0
Cre10.g417650 Chlamydomonas reinhardtii HOM05D006647 ORTHO05D008232 1.2e-41 174.1 173 50.9
MCO06G107 Micromonas commoda HOM05D006647 ORTHO05D008232 6.0e-41 171.8 169 53.8
BcaB01g01017 Brassica carinata HOM05D006647 ORTHO05D008232 6.6e-40 168.3 107 70.1
BcaB04g18808 Brassica carinata HOM05D006647 ORTHO05D008232 6.6e-40 168.3 107 70.1
Aa31LG10G17440 Aethionema arabicum HOM05D006647 ORTHO05D008232 5.6e-39 165.2 106 72.6
Cc00_g30670 Coffea canephora HOM05D006647 ORTHO05D008232 3.1e-37 159.5 82 89.0
Zm00001eb034920 Zea mays HOM05D006647 ORTHO05D008232 3.1e-37 159.5 116 66.4
FAN01G1906 Fragaria x ananassa HOM05D006647 ORTHO05D008232 2.0e-36 156.8 93 77.4
Ca_26823_v3 Cicer arietinum L. HOM05D006647 ORTHO05D008232 1.1e-34 151.0 81 85.2
Ah.10g029810 Amaranthus hybridus HOM05D006647 ORTHO05D008232 7.1e-34 148.3 93 72.0
Cpa.g.sc234.13 Carica papaya HOM05D006647 ORTHO05D008232 3.9e-32 142.5 82 82.9
MBI04_g09488_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 1.3e-24 117.5 64 85.9
Aa31LG10G17450 Aethionema arabicum HOM05D006647 ORTHO05D008232 4.3e-23 112.5 104 55.8
PRCOL_00005260 Prasinoderma coloniale HOM05D006647 ORTHO05D008232 1.3e-19 100.9 163 39.3


User provided reference genes

Program Settings