Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 3.6e-169 598.2 310 100.0
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 2.3e-160 568.9 309 94.8
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 1.8e-80 303.5 324 54.6
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 4.1e-80 302.4 340 53.5
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 3.5e-79 299.3 312 54.8
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 1.3e-73 280.8 335 51.9
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 3.5e-71 272.7 334 47.9
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 2.9e-70 269.6 331 48.3
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 1.5e-69 267.3 330 49.1
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 7.2e-69 265.0 320 49.7
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 6.1e-68 261.9 320 49.4
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 8.0e-68 261.5 349 46.1
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 1.0e-67 261.2 334 47.0
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 2.3e-67 260.0 372 44.4
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 1.2e-66 257.7 342 45.3
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 1.2e-66 257.7 345 44.9
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 2.0e-66 256.9 334 45.8
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.7e-65 253.8 275 51.3
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 4.8e-65 252.3 325 47.7
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 6.3e-65 251.9 394 41.4
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.3e-65 251.9 331 46.8
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 1.8e-64 250.4 331 47.4
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 3.1e-64 249.6 334 46.4
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 3.1e-64 249.6 330 47.3
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 7.0e-64 248.4 334 44.9
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 7.0e-64 248.4 323 47.1
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 3.5e-63 246.1 334 44.9
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 5.9e-63 245.4 336 43.8
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 5.9e-63 245.4 352 45.2
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 7.7e-63 245.0 352 47.7
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 1.0e-62 244.6 356 44.7
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.3e-62 244.2 356 44.7
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.7e-62 243.8 321 46.1
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 3.8e-62 242.7 354 45.8
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 5.0e-62 242.3 336 46.4
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 6.5e-62 241.9 356 44.4
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.1e-61 241.1 356 44.1
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.5e-61 240.7 321 45.5
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.9e-61 240.4 323 45.8
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.9e-61 240.4 356 44.4
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 3.3e-61 239.6 353 43.9
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 4.2e-61 239.2 332 46.4
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 9.5e-61 238.0 329 44.1
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 2.8e-60 236.5 321 45.2
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 4.7e-60 235.7 329 44.7
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 8.0e-60 235.0 336 43.8
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 1.4e-59 234.2 321 44.9
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 1.4e-59 234.2 223 56.1
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 1.4e-59 234.2 347 44.1
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 1.4e-59 234.2 319 44.5
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 5.2e-59 232.3 223 56.1
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.3e-57 227.6 223 56.1
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 1.7e-57 227.3 364 42.0
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 1.7e-57 227.3 239 54.4
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.2e-57 226.9 345 42.3
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 2.2e-57 226.9 343 42.6
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 2.2e-57 226.9 353 41.6
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 2.8e-57 226.5 347 41.5
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 8.3e-57 224.9 347 42.1
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 1.4e-56 224.2 350 41.4
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 1.8e-56 223.8 352 42.3
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.4e-56 223.4 345 42.3
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 4.1e-56 222.6 346 43.1
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.2e-55 221.1 222 57.2
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 1.6e-55 220.7 351 41.3
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 2.7e-55 219.9 338 39.1
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 2.7e-55 219.9 221 53.8
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 2.7e-55 219.9 355 41.7
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 5.9e-55 218.8 356 41.3
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 1.3e-54 217.6 320 43.8
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 1.3e-54 217.6 334 41.9
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 1.3e-54 217.6 327 42.5
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 5.0e-54 215.7 351 40.5
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.0e-54 215.7 213 53.5
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 3.3e-53 213.0 353 41.1
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 5.6e-53 212.2 318 40.3
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 7.3e-53 211.8 341 43.1
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 2.8e-52 209.9 335 40.6
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 1.4e-51 207.6 355 40.8
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 1.8e-51 207.2 226 51.8
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 3.0e-51 206.5 337 40.4
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 3.0e-51 206.5 225 54.2
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 4.0e-51 206.1 353 40.2
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 4.0e-51 206.1 353 40.2
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 8.9e-51 204.9 354 39.5
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 8.9e-51 204.9 354 39.5
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 3.4e-50 203.0 229 48.9
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 4.4e-50 202.6 353 39.7
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 4.4e-50 202.6 330 41.5
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 9.8e-50 201.4 226 50.4
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 1.7e-49 200.7 326 38.0
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 2.9e-49 199.9 339 41.9
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 4.9e-49 199.1 320 40.6
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 5.4e-48 195.7 445 36.9
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 5.4e-48 195.7 321 39.6
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 7.0e-48 195.3 332 41.6
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 3.0e-46 189.9 335 39.1
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 5.0e-46 189.1 353 39.1
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 1.1e-45 188.0 349 38.1
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 2.8e-44 183.3 167 59.9
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 6.2e-44 182.2 262 44.7
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 8.0e-44 181.8 335 39.1
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 4.0e-43 179.5 214 47.2
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 6.8e-43 178.7 177 54.2
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 1.2e-42 177.9 233 42.5
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 1.2e-42 177.9 321 38.0
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 9.2e-40 168.3 321 36.4
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 3.5e-39 166.4 135 60.7
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 7.8e-39 165.2 369 35.5
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 1.0e-38 164.9 347 34.0
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 1.7e-38 164.1 210 43.8
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 2.3e-38 163.7 330 38.2
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 6.6e-38 162.2 369 34.4
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 8.6e-38 161.8 216 44.9
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 2.5e-37 160.2 216 44.9
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 2.5e-37 160.2 216 44.9
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 3.6e-36 156.4 217 44.7
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 3.6e-36 156.4 217 45.2
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 4.4e-34 149.4 231 41.6
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 7.5e-34 148.7 218 44.5
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 1.1e-32 144.8 230 41.3
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 2.9e-25 120.2 230 36.5
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 7.1e-24 115.5 92 59.8
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 1.0e-22 111.7 230 33.5
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 2.5e-21 107.1 204 37.3
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 2.5e-21 107.1 114 52.6
Lju170C28T1 Lonicera japonica HOM05D004413 ORTHO05D005199 5.6e-21 105.9 75 76.0
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 4.7e-20 102.8 98 55.1
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 5.4e-16 89.4 225 31.6
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 1.6e-15 87.8 70 64.3
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 3.0e-14 83.6 170 38.8
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 6.6e-14 82.4 221 30.8
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 1.6e-12 77.8 219 29.7
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 3.6e-12 76.6 68 58.8
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 8.1e-12 75.5 222 28.4
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.4e-11 74.7 67 55.2
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 2.0e-10 70.9 185 30.3
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 2.6e-10 70.5 185 30.3
Nitab4.5_0003792g0060 Nicotiana tabacum HOM05D004413 ORTHO05D005199 2.9e-09 67.0 94 41.5
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.4e-09 65.5 47 63.8
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.4e-08 64.7 42 66.7
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 2.7e-07 60.5 221 25.3
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.0e-07 59.3 42 61.9
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.9e-06 56.6 47 61.7
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.7e-06 55.5 47 59.6


User provided reference genes

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