Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A607T81 Lonicera japonica HOM05D001355 ORTHO05D016189 2.7e-32 141.4 70 100.0
Cc02_g39940 Coffea canephora HOM05D001355 ORTHO05D004435 4.7e-16 87.4 60 76.7
HanXRQChr13g0426481 Helianthus annuus HOM05D001355 ORTHO05D004435 6.1e-16 87.0 60 78.3
DCAR_002977 Daucus carota HOM05D001355 ORTHO05D004435 8.0e-16 86.7 60 75.0
Migut.D01961 Erythranthe guttata HOM05D001355 ORTHO05D004435 8.0e-16 86.7 60 75.0
Potri.002G179500 Populus trichocarpa HOM05D001355 ORTHO05D004435 8.0e-16 86.7 60 78.3
Cfa003735 Carpinus fangiana HOM05D001355 ORTHO05D004435 1.4e-15 85.9 60 76.7
Haze_15734 Corylus avellana HOM05D001355 ORTHO05D004435 1.4e-15 85.9 60 76.7
Duzib138G1500 Durio zibethinus HOM05D001355 ORTHO05D004435 1.4e-15 85.9 60 75.0
Sabra02G0134400 Salix brachista HOM05D001355 ORTHO05D004435 1.8e-15 85.5 60 76.7
Dinv32644 Davidia involucrata HOM05D001355 ORTHO05D004435 2.3e-15 85.1 60 75.0
VMungo1309G2338 Vigna mungo HOM05D001355 ORTHO05D004435 3.0e-15 84.7 60 75.0
Lj3g0000851 Lotus japonicus HOM05D001355 ORTHO05D004435 3.9e-15 84.3 60 75.0
Sc01g0002190 Simmondsia chinensis HOM05D001355 ORTHO05D004435 3.9e-15 84.3 60 71.7
MSTRG.4362 Avicennia marina HOM05D001355 ORTHO05D004435 5.2e-15 84.0 60 73.3
COL.COLO4_23047 Corchorus olitorius HOM05D001355 ORTHO05D004435 5.2e-15 84.0 60 73.3
TWI59G1435 Tripterygium wilfordii HOM05D001355 ORTHO05D004435 5.2e-15 84.0 60 75.0
ATR0743G158 Amborella trichopoda HOM05D001355 ORTHO05D004435 6.7e-15 83.6 60 73.3
Gohir.A11G101000 Gossypium hirsutum HOM05D001355 ORTHO05D004435 6.7e-15 83.6 60 71.7
Lsat_1_v5_gn_2_75740 Lactuca sativa HOM05D001355 ORTHO05D004435 6.7e-15 83.6 60 75.0
Lsat_1_v5_gn_3_140821 Lactuca sativa HOM05D001355 ORTHO05D004435 6.7e-15 83.6 60 75.0
Solyc12g009400.2 Solanum lycopersicum HOM05D001355 ORTHO05D004435 6.7e-15 83.6 60 75.0
Solyc12g009410.2 Solanum lycopersicum HOM05D001355 ORTHO05D004435 6.7e-15 83.6 60 75.0
Sopen12g004390 Solanum pennellii HOM05D001355 ORTHO05D004435 6.7e-15 83.6 60 75.0
Sopen12g004400 Solanum pennellii HOM05D001355 ORTHO05D004435 6.7e-15 83.6 60 75.0
PGSC0003DMG400002921 Solanum tuberosum HOM05D001355 ORTHO05D004435 6.7e-15 83.6 60 75.0
Glyma.07G049600 Glycine max HOM05D001355 ORTHO05D004435 8.8e-15 83.2 60 73.3
Thecc.01G333300 Theobroma cacao HOM05D001355 ORTHO05D004435 8.8e-15 83.2 60 71.7
TPR.G4770 Trifolium pratense HOM05D001355 ORTHO05D004435 8.8e-15 83.2 60 75.0
Ca_09545_v3 Cicer arietinum L. HOM05D001355 ORTHO05D004435 1.1e-14 82.8 60 73.3
MBI04_g22065_MAGBIO Magnolia biondii HOM05D001355 ORTHO05D004435 1.1e-14 82.8 60 73.3
Manes.01G239900 Manihot esculenta HOM05D001355 ORTHO05D004435 1.1e-14 82.8 60 75.0
SalBow6G6731 Salvia bowleyana HOM05D001355 ORTHO05D004435 1.1e-14 82.8 60 70.0
VMungo0331G2037 Vigna mungo HOM05D001355 ORTHO05D004435 1.1e-14 82.8 60 73.3
Sed0007101 Sechium edule HOM05D001355 ORTHO05D004435 1.5e-14 82.4 60 71.7
SGA_v2.0_scaffold114G31817 Striga asiatica HOM05D001355 ORTHO05D004435 1.5e-14 82.4 60 71.7
TWI14G0894 Tripterygium wilfordii HOM05D001355 ORTHO05D004435 1.5e-14 82.4 60 73.3
TWI23G0366 Tripterygium wilfordii HOM05D001355 ORTHO05D004435 1.5e-14 82.4 60 73.3
C05p00840 Brassica napus HOM05D001355 ORTHO05D004435 2.0e-14 82.0 60 71.7
BolC5t28867H Brassica oleracea HOM05D001355 ORTHO05D004435 2.0e-14 82.0 60 71.7
Cpa.g.sc193.13 Carica papaya HOM05D001355 ORTHO05D004435 2.0e-14 82.0 60 73.3
Dinv18760 Davidia involucrata HOM05D001355 ORTHO05D004435 2.0e-14 82.0 60 73.3
Gohir.D11G105600 Gossypium hirsutum HOM05D001355 ORTHO05D004435 2.0e-14 82.0 60 70.0
Gorai.007G112900 Gossypium raimondii HOM05D001355 ORTHO05D004435 2.0e-14 82.0 60 70.0
Oeu053274.1 Olea europaea HOM05D001355 ORTHO05D004435 2.0e-14 82.0 60 71.7
Atru.chr5.767 Acer truncatum HOM05D001355 ORTHO05D004435 2.6e-14 81.6 60 73.3
CSS0001663 Camellia sinensis var. sinensis HOM05D001355 ORTHO05D004435 2.6e-14 81.6 60 71.7
PGR042G0370 Punica granatum HOM05D001355 ORTHO05D004435 2.6e-14 81.6 60 71.7
BcaC07g42258 Brassica carinata HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 71.7
BcaC07g42365 Brassica carinata HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 71.7
BcaC07g42368 Brassica carinata HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 71.7
BcaC07g42372 Brassica carinata HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 71.7
C08p52820 Brassica napus HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 71.7
C08p53460 Brassica napus HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 71.7
CAN.G1591.4 Capsicum annuum HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 71.7
FvH4_7g17660 Fragaria vesca HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 71.7
FAN01G1819 Fragaria x ananassa HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 71.7
FAN03G2680 Fragaria x ananassa HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 71.7
FAN06G2862 Fragaria x ananassa HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 71.7
FAN06G2960 Fragaria x ananassa HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 71.7
FAN10G2035 Fragaria x ananassa HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 71.7
FAN10G3904 Fragaria x ananassa HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 71.7
Nitab4.5_0000170g0230 Nicotiana tabacum HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 70.0
Nitab4.5_0000807g0170 Nicotiana tabacum HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 70.0
Phvul.010G119600 Phaseolus vulgaris HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 71.7
RcHm_v2.0_Chr1g0361101 Rosa chinensis HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 71.7
SEGI_07156 Sequoiadendron giganteum HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 70.0
PGSC0003DMG402013561 Solanum tuberosum HOM05D001355 ORTHO05D004435 3.3e-14 81.3 60 70.0
A09p68890 Brassica napus HOM05D001355 ORTHO05D004435 4.4e-14 80.9 60 71.7
A10p00800 Brassica napus HOM05D001355 ORTHO05D004435 4.4e-14 80.9 60 70.0
BraA09t42229Z Brassica rapa HOM05D001355 ORTHO05D004435 4.4e-14 80.9 60 71.7
BraA10t42356Z Brassica rapa HOM05D001355 ORTHO05D004435 4.4e-14 80.9 60 70.0
Glyma.03G261000 Glycine max HOM05D001355 ORTHO05D004435 4.4e-14 80.9 60 73.3
MBI12_g11800_MAGBIO Magnolia biondii HOM05D001355 ORTHO05D004435 4.4e-14 80.9 58 74.1
Nitab4.5_0000073g0440 Nicotiana tabacum HOM05D001355 ORTHO05D004435 4.4e-14 80.9 60 71.7
Oeu007913.1 Olea europaea HOM05D001355 ORTHO05D004435 4.4e-14 80.9 60 70.0
Peaxi162Scf00047g02454 Petunia axillaris HOM05D001355 ORTHO05D004435 4.4e-14 80.9 60 73.3
BcaC07g42362 Brassica carinata HOM05D001355 ORTHO05D004435 5.7e-14 80.5 60 71.7
CARHR001370 Cardamine hirsuta HOM05D001355 ORTHO05D004435 5.7e-14 80.5 60 70.0
SMO118G0177 Selaginella moellendorffii HOM05D001355 ORTHO05D004435 5.7e-14 80.5 60 70.0
arahy.Tifrunner.gnm1.ann1.VQ9M9S Arachis hypogaea HOM05D001355 ORTHO05D004435 7.4e-14 80.1 60 70.0
CAN.G57.3 Capsicum annuum HOM05D001355 ORTHO05D004435 7.4e-14 80.1 60 68.3
ECA247G2213 Erigeron canadensis HOM05D001355 ORTHO05D004435 7.4e-14 80.1 60 68.3
THA.LOC104801350 Tarenaya hassleriana HOM05D001355 ORTHO05D004435 7.4e-14 80.1 60 70.0
Atru.chr9.1849 Acer truncatum HOM05D001355 ORTHO05D004435 9.7e-14 79.7 60 71.7
Aqoxy5G04344 Aquilegia oxysepala HOM05D001355 ORTHO05D004435 9.7e-14 79.7 60 68.3
CANSAT56G2429 Cannabis sativa HOM05D001355 ORTHO05D004435 9.7e-14 79.7 60 70.0
Eucgr.E01069 Eucalyptus grandis HOM05D001355 ORTHO05D004435 9.7e-14 79.7 60 68.3
Glyma.19G260000 Glycine max HOM05D001355 ORTHO05D004435 9.7e-14 79.7 60 71.7
Nitab4.5_0002570g0010 Nicotiana tabacum HOM05D001355 ORTHO05D004435 9.7e-14 79.7 60 70.0
Os04g0119400 Oryza sativa ssp. japonica HOM05D001355 ORTHO05D004435 9.7e-14 79.7 60 70.0
Prupe.2G197700 Prunus persica HOM05D001355 ORTHO05D004435 9.7e-14 79.7 60 70.0
Sed0023392 Sechium edule HOM05D001355 ORTHO05D004435 9.7e-14 79.7 60 68.3
SEGI_39603 Sequoiadendron giganteum HOM05D001355 ORTHO05D004435 9.7e-14 79.7 60 66.7
unitig_744.g24397 Utricularia gibba HOM05D001355 ORTHO05D004435 9.7e-14 79.7 60 68.3
Manes.05G016500 Manihot esculenta HOM05D001355 ORTHO05D004435 1.3e-13 79.3 60 71.7
Phvul.009G257800 Phaseolus vulgaris HOM05D001355 ORTHO05D004435 1.3e-13 79.3 60 71.7
QL08p047239 Quercus lobata HOM05D001355 ORTHO05D004435 1.3e-13 79.3 60 70.0
vmacro12644 Vaccinium macrocarpon HOM05D001355 ORTHO05D016189 1.3e-13 79.3 60 70.0
Aa31LG1G10460 Aethionema arabicum HOM05D001355 ORTHO05D010028 1.7e-13 79.0 60 68.3
AL1G11430 Arabidopsis lyrata HOM05D001355 ORTHO05D004435 1.7e-13 79.0 60 70.0
AT1G01090 Arabidopsis thaliana HOM05D001355 ORTHO05D004435 1.7e-13 79.0 60 70.0
arahy.Tifrunner.gnm1.ann1.0U4Z5X Arachis hypogaea HOM05D001355 ORTHO05D004435 1.7e-13 79.0 59 71.2
BolC8t52861H Brassica oleracea HOM05D001355 ORTHO05D004435 1.7e-13 79.0 60 70.0
Carub.0001s0113 Capsella rubella HOM05D001355 ORTHO05D004435 1.7e-13 79.0 60 70.0
AUR62038348 Chenopodium quinoa HOM05D001355 ORTHO05D004435 1.7e-13 79.0 60 68.3
ClCG06G002270 Citrullus lanatus HOM05D001355 ORTHO05D004435 1.7e-13 79.0 60 68.3
MD07G1159600 Malus domestica HOM05D001355 ORTHO05D004435 1.7e-13 79.0 60 68.3
AUR62041497 Chenopodium quinoa HOM05D001355 ORTHO05D004435 2.2e-13 78.6 60 68.3
Gorai.008G131200 Gossypium raimondii HOM05D001355 ORTHO05D004435 2.2e-13 78.6 60 68.3
Medtr8g024310 Medicago truncatula HOM05D001355 ORTHO05D004435 2.2e-13 78.6 60 68.3
PSO017G0474 Papaver somniferum HOM05D001355 ORTHO05D004435 2.2e-13 78.6 60 70.0
PSO063G1331 Papaver somniferum HOM05D001355 ORTHO05D004435 2.2e-13 78.6 60 70.0
PSO541G6414 Papaver somniferum HOM05D001355 ORTHO05D004435 2.2e-13 78.6 60 70.0
PSO675G4431 Papaver somniferum HOM05D001355 ORTHO05D004435 2.2e-13 78.6 60 70.0
Pp3c15_8520 Physcomitrium patens HOM05D001355 ORTHO05D004435 2.2e-13 78.6 60 66.7
MSTRG.9680 Avicennia marina HOM05D001355 ORTHO05D004435 2.8e-13 78.2 60 68.3
Eucgr.E01071 Eucalyptus grandis HOM05D001355 ORTHO05D004435 2.8e-13 78.2 60 70.0
Thhalv10007695m.g Eutrema salsugineum HOM05D001355 ORTHO05D004435 2.8e-13 78.2 60 68.3
Glyma.16G018300 Glycine max HOM05D001355 ORTHO05D004435 2.8e-13 78.2 60 68.3
Mapoly0005s0206 Marchantia polymorpha HOM05D001355 ORTHO05D004435 2.8e-13 78.2 60 66.7
Sp1g01190 Schrenkiella parvula HOM05D001355 ORTHO05D004435 2.8e-13 78.2 60 68.3
THA.LOC104825902 Tarenaya hassleriana HOM05D001355 ORTHO05D004435 2.8e-13 78.2 60 70.0
TAR374G0567 Trochodendron aralioides HOM05D001355 ORTHO05D004435 2.8e-13 78.2 60 70.0
unitig_21.g20446 Utricularia gibba HOM05D001355 ORTHO05D004435 2.8e-13 78.2 60 68.3
vmacro11486 Vaccinium macrocarpon HOM05D001355 ORTHO05D004435 2.8e-13 78.2 60 70.0
Lsat_1_v5_gn_6_23561 Lactuca sativa HOM05D001355 ORTHO05D004435 3.7e-13 77.8 60 70.0
Pp3c9_5460 Physcomitrium patens HOM05D001355 ORTHO05D004435 3.7e-13 77.8 60 65.0
Pp3c9_5550 Physcomitrium patens HOM05D001355 ORTHO05D004435 3.7e-13 77.8 60 65.0
Hund16752 Selenicereus undatus HOM05D001355 ORTHO05D004435 3.7e-13 77.8 60 68.3
Ah.05g178950 Amaranthus hybridus HOM05D001355 ORTHO05D004435 4.8e-13 77.4 60 68.3
arahy.Tifrunner.gnm1.ann1.G7YSG8 Arachis hypogaea HOM05D001355 ORTHO05D004435 4.8e-13 77.4 60 68.3
Psat0s3525g0080 Pisum sativum HOM05D001355 ORTHO05D004435 6.3e-13 77.0 60 71.7
Zm00001eb089020 Zea mays HOM05D001355 ORTHO05D004435 6.3e-13 77.0 60 68.3
Actinidia04171 Actinidia chinensis HOM05D001355 ORTHO05D004435 8.2e-13 76.6 60 68.3
BcaB03g13555 Brassica carinata HOM05D001355 ORTHO05D010028 8.2e-13 76.6 58 70.7
MELO3C022306.2 Cucumis melo HOM05D001355 ORTHO05D004435 8.2e-13 76.6 60 65.0
Actinidia22219 Actinidia chinensis HOM05D001355 ORTHO05D004435 1.1e-12 76.3 60 66.7
AagrBONN_evm.TU.Sc2ySwM_368.294 Anthoceros agrestis HOM05D001355 ORTHO05D004435 1.1e-12 76.3 60 66.7
AagrBONN_evm.TU.Sc2ySwM_368.305 Anthoceros agrestis HOM05D001355 ORTHO05D004435 1.1e-12 76.3 60 65.0
AUR62016854 Chenopodium quinoa HOM05D001355 ORTHO05D004435 1.1e-12 76.3 68 60.3
Ciclev10020210m.g Citrus clementina HOM05D001355 ORTHO05D004435 1.1e-12 76.3 60 68.3
CsaV3_6G008320 Cucumis sativus L. HOM05D001355 ORTHO05D004435 1.1e-12 76.3 60 66.7
Psat4g164040 Pisum sativum HOM05D001355 ORTHO05D004435 1.1e-12 76.3 60 66.7
SGA_v2.0_scaffold7G04147 Striga asiatica HOM05D002435 ORTHO05D002550 1.1e-12 76.3 58 69.0
Gohir.A12G116700 Gossypium hirsutum HOM05D001355 ORTHO05D004435 1.4e-12 75.9 60 65.0
Gohir.D12G120200 Gossypium hirsutum HOM05D001355 ORTHO05D004435 1.4e-12 75.9 60 65.0
TPR.G19841 Trifolium pratense HOM05D001355 ORTHO05D004435 1.4e-12 75.9 60 66.7
Actinidia28086 Actinidia chinensis HOM05D001355 ORTHO05D004435 1.8e-12 75.5 56 75.0
Aa31LG5G1160 Aethionema arabicum HOM05D001355 ORTHO05D004435 1.8e-12 75.5 60 68.3
Gohir.D12G193800 Gossypium hirsutum HOM05D001355 ORTHO05D004435 1.8e-12 75.5 60 65.0
CBR_g48779 Chara braunii HOM05D001355 ORTHO05D004435 2.4e-12 75.1 60 63.3
Rhsim02G0253800 Rhododendron simsii HOM05D001355 ORTHO05D004435 2.4e-12 75.1 60 66.7
EL10Ac3g06767 Beta vulgaris HOM05D001355 ORTHO05D004435 3.1e-12 74.7 60 63.3
CDE08G0646 Ceratophyllum demersum HOM05D001355 ORTHO05D004435 3.1e-12 74.7 60 63.3
Lalb_Chr10g0100881 Lupinus albus HOM05D001355 ORTHO05D004435 3.1e-12 74.7 60 65.0
Gorai.008G130900 Gossypium raimondii HOM05D001355 ORTHO05D004435 4.1e-12 74.3 60 63.3
Lsat_1_v5_gn_8_101580 Lactuca sativa HOM05D001355 ORTHO05D004052 4.1e-12 74.3 60 68.3
TAR375G0155 Trochodendron aralioides HOM05D001355 ORTHO05D004435 4.1e-12 74.3 60 66.7
GSVIVG01027439001 Vitis vinifera HOM05D001355 ORTHO05D004435 4.1e-12 74.3 60 66.7
CDE08G0084 Ceratophyllum demersum HOM05D001355 ORTHO05D004435 5.3e-12 73.9 60 65.0
Ca_26062_v3 Cicer arietinum L. HOM05D001355 ORTHO05D004435 5.3e-12 73.9 60 65.0
Gorai.008G208500 Gossypium raimondii HOM05D001355 ORTHO05D004435 5.3e-12 73.9 60 63.3
Lj2A152G22 Lonicera japonica HOM05D001355 ORTHO05D004435 5.3e-12 73.9 60 66.7
RcHm_v2.0_Chr1g0334521 Rosa chinensis HOM05D001355 ORTHO05D004435 5.3e-12 73.9 70 62.9
HPP92_021499 Vanilla planifolia HOM05D001355 ORTHO05D004435 1.2e-11 72.8 60 63.3
HPP92_021520 Vanilla planifolia HOM05D001355 ORTHO05D004435 1.2e-11 72.8 60 63.3
Hma1.2p1_0074F.1_g038730 Hydrangea macrophylla HOM05D001355 ORTHO05D004435 4.5e-11 70.9 60 66.7
Cre02.g099850 Chlamydomonas reinhardtii HOM05D001355 ORTHO05D004435 7.7e-11 70.1 60 61.7
Nitab4.5_0000349g0030 Nicotiana tabacum HOM05D001355 ORTHO05D016189 1.7e-10 68.9 60 63.3
Oeu028218.1 Olea europaea HOM05D001355 ORTHO05D004435 2.9e-10 68.2 50 72.0
BcaC07g42249 Brassica carinata HOM05D001355 ORTHO05D004435 5.0e-10 67.4 54 68.5
Nitab4.5_0000960g0170 Nicotiana tabacum HOM05D004107 ORTHO05D004738 1.1e-09 66.2 72 50.0
Nitab4.5_0000952g0060 Nicotiana tabacum HOM05D001355 ORTHO05D282947 1.5e-09 65.9 57 61.4
Oeu043195.1 Olea europaea HOM05D001355 ORTHO05D004435 2.5e-09 65.1 64 60.9
SGA_v2.0_scaffold173G39199 Striga asiatica HOM05D001355 ORTHO05D016189 7.2e-09 63.5 58 56.9
Nn3g18802 Nelumbo nucifera HOM05D001355 ORTHO05D004435 9.4e-09 63.2 50 68.0
CARHR259890 Cardamine hirsuta HOM05D001355 ORTHO05D016189 2.7e-08 61.6 47 63.8
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 1.8e-07 58.9 60 58.3
Nitab4.5_0008254g0010 Nicotiana tabacum HOM05D017975 ORTHO05D016189 1.8e-07 58.9 60 58.3
SGA_v2.0_scaffold25G10722 Striga asiatica HOM05D001355 ORTHO05D004435 3.0e-07 58.2 58 53.4
SGA_v2.0_scaffold113G31766 Striga asiatica HOM05D001355 ORTHO05D016189 6.7e-07 57.0 54 57.4
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 5.7e-06 53.9 56 53.6


User provided reference genes

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