Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 1.1e-110 403.3 193 100.0
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 3.8e-68 261.9 137 92.0
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 1.1e-67 260.4 137 91.2
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 7.2e-67 257.7 129 94.6
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 7.2e-67 257.7 129 93.8
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 7.2e-67 257.7 129 94.6
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 7.2e-67 257.7 131 93.9
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 9.4e-67 257.3 129 94.6
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 2.1e-66 256.1 136 89.0
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.7e-66 255.8 128 93.8
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 4.7e-66 255.0 129 92.2
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 4.7e-66 255.0 133 91.7
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 4.7e-66 255.0 137 91.2
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 6.1e-66 254.6 129 92.2
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 7.9e-66 254.2 128 93.0
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 7.9e-66 254.2 128 93.0
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 7.9e-66 254.2 128 93.0
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 7.9e-66 254.2 128 93.0
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 7.9e-66 254.2 128 93.0
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 7.9e-66 254.2 130 93.1
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 7.9e-66 254.2 128 93.0
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 1.0e-65 253.8 128 93.0
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 1.0e-65 253.8 133 89.5
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.4e-65 253.4 129 93.0
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 1.4e-65 253.4 129 91.5
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 1.8e-65 253.1 128 93.0
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.8e-65 253.1 128 92.2
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.8e-65 253.1 128 92.2
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 1.8e-65 253.1 137 89.8
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 1.8e-65 253.1 131 90.8
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 2.3e-65 252.7 127 93.7
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 2.3e-65 252.7 127 93.7
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 2.3e-65 252.7 127 93.7
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.3e-65 252.7 128 92.2
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 2.3e-65 252.7 129 92.2
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 2.3e-65 252.7 129 92.2
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 3.0e-65 252.3 128 93.0
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 3.0e-65 252.3 132 90.9
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 3.0e-65 252.3 129 92.2
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 3.0e-65 252.3 128 91.4
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 3.0e-65 252.3 129 91.5
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 3.9e-65 251.9 131 92.4
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 5.1e-65 251.5 134 89.6
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 5.1e-65 251.5 127 92.9
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 5.1e-65 251.5 130 92.3
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 6.7e-65 251.1 128 90.6
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 6.7e-65 251.1 128 91.4
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 6.7e-65 251.1 128 91.4
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 6.7e-65 251.1 124 95.2
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 6.7e-65 251.1 128 92.2
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 6.7e-65 251.1 128 92.2
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 8.8e-65 250.8 128 93.0
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 8.8e-65 250.8 127 92.1
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 8.8e-65 250.8 127 92.9
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 8.8e-65 250.8 127 92.9
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 8.8e-65 250.8 128 91.4
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 1.1e-64 250.4 128 92.2
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 1.1e-64 250.4 128 92.2
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 1.1e-64 250.4 131 90.8
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 1.1e-64 250.4 128 91.4
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.1e-64 250.4 129 90.7
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.1e-64 250.4 129 90.7
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 1.5e-64 250.0 127 92.9
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 2.0e-64 249.6 128 92.2
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.0e-64 249.6 133 90.2
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 2.0e-64 249.6 128 92.2
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 2.0e-64 249.6 128 92.2
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 2.6e-64 249.2 132 88.6
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 2.6e-64 249.2 128 91.4
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 2.6e-64 249.2 134 91.0
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 2.6e-64 249.2 131 90.1
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 2.6e-64 249.2 137 88.3
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 3.3e-64 248.8 128 89.8
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 4.4e-64 248.4 140 87.9
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 4.4e-64 248.4 128 90.6
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 5.7e-64 248.1 128 91.4
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 5.7e-64 248.1 131 89.3
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 5.7e-64 248.1 131 90.1
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 5.7e-64 248.1 127 91.3
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 5.7e-64 248.1 137 86.9
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 5.7e-64 248.1 133 89.5
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 5.7e-64 248.1 131 90.1
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 5.7e-64 248.1 131 90.1
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 9.7e-64 247.3 130 90.0
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 9.7e-64 247.3 137 88.3
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 9.7e-64 247.3 128 91.4
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 1.3e-63 246.9 128 90.6
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 1.3e-63 246.9 128 90.6
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.3e-63 246.9 131 89.3
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.7e-63 246.5 142 83.1
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 1.7e-63 246.5 132 87.9
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 1.7e-63 246.5 131 88.5
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.7e-63 246.5 128 89.1
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.7e-63 246.5 128 89.1
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.7e-63 246.5 137 86.1
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 2.2e-63 246.1 131 88.5
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 2.2e-63 246.1 130 89.2
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 2.8e-63 245.7 128 89.1
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 2.8e-63 245.7 128 89.8
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 2.8e-63 245.7 131 87.8
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 2.8e-63 245.7 124 91.9
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.7e-63 245.4 128 90.6
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.7e-63 245.4 128 90.6
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 3.7e-63 245.4 130 88.5
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.7e-63 245.4 130 88.5
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.7e-63 245.4 130 88.5
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.7e-63 245.4 130 88.5
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.7e-63 245.4 130 88.5
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.7e-63 245.4 130 88.5
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 3.7e-63 245.4 130 88.5
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 3.7e-63 245.4 130 89.2
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 4.8e-63 245.0 130 89.2
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 8.2e-63 244.2 128 90.6
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 8.2e-63 244.2 134 88.8
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 8.2e-63 244.2 130 87.7
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 8.2e-63 244.2 125 92.8
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 1.4e-62 243.4 128 89.1
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 1.4e-62 243.4 128 89.1
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 1.4e-62 243.4 128 89.1
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 1.8e-62 243.0 128 89.1
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 1.8e-62 243.0 128 89.1
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 1.8e-62 243.0 128 89.1
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 1.8e-62 243.0 128 89.1
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 1.8e-62 243.0 128 89.1
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 1.8e-62 243.0 128 89.1
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 5.3e-62 241.5 133 86.5
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 9.1e-62 240.7 128 86.7
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 9.1e-62 240.7 129 87.6
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 1.2e-61 240.4 128 86.7
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 2.0e-61 239.6 128 89.1
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 4.5e-61 238.4 127 87.4
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 5.9e-61 238.0 128 85.9
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 7.7e-61 237.7 137 85.4
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 2.9e-60 235.7 136 83.8
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 3.8e-60 235.3 128 86.7
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 5.0e-60 235.0 135 83.0
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 5.0e-60 235.0 135 83.0
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 2.5e-59 232.6 124 89.5
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 5.5e-59 231.5 132 83.3
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 6.1e-58 228.0 124 83.9
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 1.1e-56 223.8 132 82.6
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 2.4e-54 216.1 112 91.1
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 5.0e-52 208.4 131 80.2
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 3.2e-51 205.7 188 58.5
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 9.4e-51 204.1 123 78.9
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 3.6e-50 202.2 126 70.6
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 4.7e-50 201.8 124 71.0
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 4.8e-47 191.8 131 69.5
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 4.1e-46 188.7 114 77.2
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.7e-42 175.3 87 93.1
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.3e-41 172.9 125 69.6
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 4.9e-39 165.2 96 79.2
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 3.1e-38 162.5 80 93.8
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 4.1e-38 162.2 83 91.6
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 4.5e-37 158.7 83 90.4
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 2.9e-36 156.0 83 86.7
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 5.0e-36 155.2 86 83.7
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 9.5e-35 151.0 129 62.0
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 1.4e-30 137.1 95 74.7
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 1.2e-29 134.0 72 84.7
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 8.6e-28 127.9 71 87.3
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.3e-27 125.9 71 87.3
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 1.6e-26 123.6 71 85.9
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 1.0e-25 120.9 61 91.8
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 8.9e-25 117.9 77 74.0
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 3.2e-22 109.4 53 94.3
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 6.4e-15 85.1 46 87.0
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 3.9e-12 75.9 53 67.9


User provided reference genes

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