Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 3.6e-127 458.4 254 100.0
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 2.0e-80 303.1 254 69.7
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 6.3e-71 271.6 246 63.4
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 9.4e-67 257.7 244 61.5
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 1.5e-64 250.4 245 57.6
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 2.0e-64 250.0 245 57.6
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 4.9e-63 245.4 246 59.3
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 1.8e-62 243.4 246 57.7
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 7.0e-62 241.5 246 57.7
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 1.2e-61 240.7 241 58.1
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 1.6e-61 240.4 246 57.7
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 3.5e-61 239.2 246 57.3
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 6.6e-60 235.0 246 55.3
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 1.1e-59 234.2 248 56.5
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 2.5e-59 233.0 229 59.0
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 2.8e-58 229.6 245 50.2
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 4.7e-58 228.8 229 58.1
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 1.0e-57 227.6 248 54.8
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 1.0e-57 227.6 253 53.4
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 1.0e-57 227.6 238 56.3
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 1.8e-57 226.9 247 55.1
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 5.2e-57 225.3 238 55.9
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 4.4e-56 222.2 249 51.8
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 2.2e-55 219.9 251 52.6
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 3.7e-55 219.2 247 53.4
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 4.9e-55 218.8 241 50.6
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 2.4e-54 216.5 228 56.1
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 3.2e-54 216.1 247 52.2
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 3.2e-54 216.1 248 50.8
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 7.0e-54 214.9 248 52.8
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 1.7e-52 210.3 245 48.6
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 1.7e-52 210.3 247 51.8
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 1.7e-52 210.3 245 49.8
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 2.3e-52 209.9 233 53.2
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 3.0e-52 209.5 234 52.6
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 5.0e-52 208.8 249 52.6
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 5.0e-52 208.8 246 52.0
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 8.6e-52 208.0 206 57.8
Sopen03g039690 Solanum pennellii HOM05D005732 ORTHO05D007062 1.5e-51 207.2 245 50.2
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 1.5e-51 207.2 180 64.4
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 2.5e-51 206.5 232 52.2
Solyc03g120870.3 Solanum lycopersicum HOM05D005732 ORTHO05D007062 2.5e-51 206.5 245 50.2
Peaxi162Scf00038g00842 Petunia axillaris HOM05D005732 ORTHO05D007062 5.6e-51 205.3 250 46.4
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 5.6e-51 205.3 233 52.4
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 7.3e-51 204.9 239 51.9
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 9.5e-51 204.5 247 51.4
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 2.1e-50 203.4 227 52.0
PGSC0003DMG400002535 Solanum tuberosum HOM05D005732 ORTHO05D007062 3.6e-50 202.6 243 48.6
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 4.7e-50 202.2 233 52.4
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 6.2e-50 201.8 227 52.0
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 6.2e-50 201.8 245 48.2
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 6.2e-50 201.8 234 51.7
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 2.3e-49 199.9 232 51.3
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 2.3e-49 199.9 232 51.3
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 2.3e-49 199.9 241 49.8
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 2.3e-49 199.9 223 51.6
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 3.1e-49 199.5 229 52.0
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 3.1e-49 199.5 244 49.6
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 3.1e-49 199.5 228 52.2
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 4.0e-49 199.1 245 47.3
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 4.0e-49 199.1 232 52.2
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 1.5e-48 197.2 247 49.8
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 2.6e-48 196.4 238 50.0
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 3.4e-48 196.1 206 55.8
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 7.5e-48 194.9 239 49.0
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 7.5e-48 194.9 225 52.9
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 9.8e-48 194.5 233 49.8
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 1.3e-47 194.1 253 49.4
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 6.4e-47 191.8 251 48.6
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 2.4e-46 189.9 254 48.8
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 4.1e-46 189.1 246 47.2
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 4.1e-46 189.1 227 51.1
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 5.4e-46 188.7 215 51.6
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 5.4e-46 188.7 247 48.2
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 7.0e-46 188.3 249 49.0
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 1.6e-45 187.2 247 46.6
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 3.5e-45 186.0 241 48.1
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 7.8e-45 184.9 245 46.9
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 1.0e-44 184.5 236 48.3
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 2.3e-44 183.3 203 52.7
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 8.6e-44 181.4 230 50.9
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 5.6e-43 178.7 235 47.7
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 1.2e-42 177.6 228 47.8
MBI19_g26309_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 1.6e-42 177.2 250 40.8
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 2.1e-42 176.8 205 50.2
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 2.8e-42 176.4 228 47.4
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 2.9e-39 166.4 239 47.7
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 4.9e-39 165.6 222 45.9
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 6.4e-39 165.2 235 45.5
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 1.9e-38 163.7 194 51.5
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 3.2e-38 162.9 206 48.1
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 4.6e-37 159.1 223 43.0
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 1.0e-36 157.9 136 64.0
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 6.6e-36 155.2 211 41.7
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 1.9e-35 153.7 202 45.5
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 1.9e-35 153.7 203 43.8
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 1.6e-34 150.6 198 43.9
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 2.8e-34 149.8 185 45.9
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 8.1e-34 148.3 203 41.4
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 8.1e-34 148.3 203 41.4
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 8.1e-34 148.3 203 41.4
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 1.1e-33 147.9 203 42.9
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 1.1e-33 147.9 204 41.2
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 1.1e-33 147.9 203 42.4
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 1.4e-33 147.5 202 42.6
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 3.1e-33 146.4 203 41.4
MBI04_g44953_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 4.0e-33 146.0 131 56.5
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 5.2e-33 145.6 199 44.7
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 5.2e-33 145.6 203 42.4
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 3.4e-32 142.9 204 41.2
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 4.4e-32 142.5 203 39.9
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 1.3e-31 141.0 203 40.9
Duzib160G0019 Durio zibethinus HOM05D005732 ORTHO05D007062 4.9e-31 139.0 199 44.2
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 5.4e-30 135.6 205 42.0
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 7.1e-30 135.2 203 41.4
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 9.2e-30 134.8 210 38.1
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 2.1e-29 133.7 202 42.1
Prupe.3G065500 Prunus persica HOM05D005732 ORTHO05D007062 2.7e-29 133.3 134 58.2
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 4.6e-29 132.5 199 38.7
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 4.6e-29 132.5 199 38.2
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 7.8e-29 131.7 199 37.7
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 7.8e-29 131.7 199 37.7
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 6.6e-28 128.6 208 38.9
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 8.6e-28 128.3 194 37.1
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 8.6e-28 128.3 203 39.4
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 3.3e-27 126.3 196 40.3
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 3.3e-27 126.3 196 40.3
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 9.6e-27 124.8 196 39.8
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 8.1e-26 121.7 196 38.8
CDE02G4152 Ceratophyllum demersum HOM05D005732 ORTHO05D007062 3.4e-24 116.3 251 32.7
Dinv30452 Davidia involucrata HOM05D005732 ORTHO05D007062 3.4e-24 116.3 128 56.2
vmacro17018 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 4.9e-23 112.5 157 45.9
ATR0705G122 Amborella trichopoda HOM05D005732 ORTHO05D007062 2.7e-21 106.7 158 41.8
ClCG09G000040 Citrullus lanatus HOM05D005732 ORTHO05D007062 1.9e-19 100.5 117 49.6
ATR0705G087 Amborella trichopoda HOM05D005732 ORTHO05D007062 1.3e-18 97.8 65 72.3
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 9.3e-14 81.6 48 79.2
CARHR074750 Cardamine hirsuta HOM05D005732 ORTHO05D007062 3.5e-13 79.7 71 54.9
Sc15g0002000 Simmondsia chinensis HOM05D005732 ORTHO05D007062 5.6e-11 72.4 42 81.0
CARHR049040 Cardamine hirsuta HOM05D005732 ORTHO05D007062 2.2e-07 60.5 41 63.4


User provided reference genes

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