Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A478G90 Lonicera japonica HOM05D006654 ORTHO05D008201 1.7e-100 369.4 190 100.0
ECA232G0809 Erigeron canadensis HOM05D006654 ORTHO05D008201 5.8e-85 317.8 185 88.6
Lsat_1_v5_gn_4_76920 Lactuca sativa HOM05D006654 ORTHO05D008201 9.8e-85 317.0 185 89.7
Cpa.g.sc13.133 Carica papaya HOM05D006654 ORTHO05D008201 1.1e-83 313.5 187 86.1
HanXRQChr16g0497681 Helianthus annuus HOM05D006654 ORTHO05D008201 1.9e-83 312.8 186 89.2
Gorai.003G121200 Gossypium raimondii HOM05D006654 ORTHO05D008201 3.2e-83 312.0 185 88.1
Thecc.03G127500 Theobroma cacao HOM05D006654 ORTHO05D008201 3.2e-83 312.0 185 88.1
Haze_07229 Corylus avellana HOM05D006654 ORTHO05D008201 4.1e-83 311.6 185 87.6
Manes.14G052100 Manihot esculenta HOM05D006654 ORTHO05D008201 7.0e-83 310.8 185 87.6
CiPaw.12G042200 Carya illinoinensis HOM05D006654 ORTHO05D008201 9.2e-83 310.5 185 87.0
CSS0035351 Camellia sinensis var. sinensis HOM05D006654 ORTHO05D008201 1.2e-82 310.1 185 87.6
COL.COLO4_28092 Corchorus olitorius HOM05D006654 ORTHO05D008201 1.2e-82 310.1 185 87.0
Hma1.2p1_0014F.1_g009560 Hydrangea macrophylla HOM05D006654 ORTHO05D008201 1.6e-82 309.7 185 86.5
Manes.06G118600 Manihot esculenta HOM05D006654 ORTHO05D008201 1.6e-82 309.7 185 85.9
ClCG03G003720 Citrullus lanatus HOM05D006654 ORTHO05D008201 2.0e-82 309.3 185 87.0
MELO3C002357.2 Cucumis melo HOM05D006654 ORTHO05D008201 2.0e-82 309.3 185 87.0
CsaV3_1G009610 Cucumis sativus L. HOM05D006654 ORTHO05D008201 2.0e-82 309.3 185 87.0
QL10p003811 Quercus lobata HOM05D006654 ORTHO05D008201 2.0e-82 309.3 185 87.6
GSVIVG01008527001 Vitis vinifera HOM05D006654 ORTHO05D008201 2.0e-82 309.3 185 87.0
Duzib068G1280 Durio zibethinus HOM05D006654 ORTHO05D008201 2.7e-82 308.9 185 86.5
Rhsim12G0173900 Rhododendron simsii HOM05D006654 ORTHO05D008201 2.7e-82 308.9 185 87.6
Actinidia08864 Actinidia chinensis HOM05D006654 ORTHO05D008201 3.5e-82 308.5 185 87.0
TAR371G0211 Trochodendron aralioides HOM05D006654 ORTHO05D008201 3.5e-82 308.5 185 86.5
vmacro16672 Vaccinium macrocarpon HOM05D006654 ORTHO05D008201 3.5e-82 308.5 186 86.6
Gohir.D03G115000 Gossypium hirsutum HOM05D006654 ORTHO05D008201 4.6e-82 308.1 185 87.6
arahy.Tifrunner.gnm1.ann1.653AWM Arachis hypogaea HOM05D006654 ORTHO05D008201 7.8e-82 307.4 186 85.5
Nn3g16497 Nelumbo nucifera HOM05D006654 ORTHO05D008201 1.0e-81 307.0 185 86.5
arahy.Tifrunner.gnm1.ann1.S79YT6 Arachis hypogaea HOM05D006654 ORTHO05D008201 3.0e-81 305.4 185 85.4
MBI07_g34629_MAGBIO Magnolia biondii HOM05D006654 ORTHO05D008201 3.0e-81 305.4 185 85.9
Sed0016483 Sechium edule HOM05D006654 ORTHO05D008201 3.0e-81 305.4 185 85.4
TWI23G1026 Tripterygium wilfordii HOM05D006654 ORTHO05D008201 3.9e-81 305.1 185 85.4
Ciclev10021838m.g Citrus clementina HOM05D006654 ORTHO05D008201 5.0e-81 304.7 185 87.0
Nn4g22349 Nelumbo nucifera HOM05D006654 ORTHO05D008201 1.5e-80 303.1 185 84.3
MD02G1316100 Malus domestica HOM05D006654 ORTHO05D008201 1.9e-80 302.8 185 86.5
SGA_v2.0_scaffold161G37776 Striga asiatica HOM05D006654 ORTHO05D008201 1.9e-80 302.8 185 84.3
AUR62029635 Chenopodium quinoa HOM05D006654 ORTHO05D008201 2.5e-80 302.4 185 83.8
Sc10g0010430 Simmondsia chinensis HOM05D006654 ORTHO05D008201 3.3e-80 302.0 185 84.3
Aqoxy5G03402 Aquilegia oxysepala HOM05D006654 ORTHO05D008201 4.3e-80 301.6 185 85.4
EL10As4g23406 Beta vulgaris HOM05D006654 ORTHO05D008201 4.3e-80 301.6 185 83.8
MD07G1005800 Malus domestica HOM05D006654 ORTHO05D008201 4.3e-80 301.6 185 85.9
Prupe.4G287600 Prunus persica HOM05D006654 ORTHO05D008201 4.3e-80 301.6 185 85.4
RcHm_v2.0_Chr1g0314831 Rosa chinensis HOM05D006654 ORTHO05D008201 4.3e-80 301.6 185 85.4
CANSAT80G1342 Cannabis sativa HOM05D006654 ORTHO05D008201 5.6e-80 301.2 185 84.9
FAN01G0962 Fragaria x ananassa HOM05D006654 ORTHO05D008201 7.3e-80 300.8 185 84.9
FAN06G4528 Fragaria x ananassa HOM05D006654 ORTHO05D008201 7.3e-80 300.8 185 84.9
Phvul.007G001300 Phaseolus vulgaris HOM05D006654 ORTHO05D008201 7.3e-80 300.8 185 83.8
Potri.015G094300 Populus trichocarpa HOM05D006654 ORTHO05D008201 7.3e-80 300.8 185 85.4
VMungo0720G2310 Vigna mungo HOM05D006654 ORTHO05D008201 7.3e-80 300.8 185 83.8
Oeu023486.1 Olea europaea HOM05D006654 ORTHO05D008201 9.5e-80 300.4 185 83.8
Peaxi162Scf00089g00632 Petunia axillaris HOM05D006654 ORTHO05D008201 9.5e-80 300.4 185 83.8
Prupe.1G190000 Prunus persica HOM05D006654 ORTHO05D008201 9.5e-80 300.4 185 84.9
Potri.012G096500 Populus trichocarpa HOM05D006654 ORTHO05D008201 1.2e-79 300.1 185 84.3
Migut.I00498 Erythranthe guttata HOM05D006654 ORTHO05D008201 1.6e-79 299.7 185 83.2
FAN03G1885 Fragaria x ananassa HOM05D006654 ORTHO05D008201 1.6e-79 299.7 185 84.3
PGR083G1205 Punica granatum HOM05D006654 ORTHO05D008201 1.6e-79 299.7 184 83.7
FvH4_7g00630 Fragaria vesca HOM05D006654 ORTHO05D008201 2.1e-79 299.3 185 84.3
Nitab4.5_0003282g0120 Nicotiana tabacum HOM05D006654 ORTHO05D008201 2.1e-79 299.3 185 83.2
Nitab4.5_0004750g0080 Nicotiana tabacum HOM05D006654 ORTHO05D008201 2.1e-79 299.3 185 83.2
Solyc03g111330.4 Solanum lycopersicum HOM05D006654 ORTHO05D008201 2.1e-79 299.3 185 83.2
Sopen03g030460 Solanum pennellii HOM05D006654 ORTHO05D008201 2.1e-79 299.3 185 83.2
FAN10G2487 Fragaria x ananassa HOM05D006654 ORTHO05D008201 2.8e-79 298.9 185 84.3
Os07g0295200 Oryza sativa ssp. japonica HOM05D006654 ORTHO05D008201 2.8e-79 298.9 185 83.2
CAN.G352.15 Capsicum annuum HOM05D006654 ORTHO05D008201 3.6e-79 298.5 185 83.2
FAN01G2458 Fragaria x ananassa HOM05D006654 ORTHO05D008201 3.6e-79 298.5 185 83.8
Cc04_g10050 Coffea canephora HOM05D006654 ORTHO05D008201 6.2e-79 297.7 185 83.8
Glyma.20G249100 Glycine max HOM05D006654 ORTHO05D008201 6.2e-79 297.7 185 82.7
PGSC0003DMG402015240 Solanum tuberosum HOM05D006654 ORTHO05D008201 6.2e-79 297.7 185 82.7
THA.LOC104818189 Tarenaya hassleriana HOM05D006654 ORTHO05D008201 1.8e-78 296.2 185 82.2
Carub.0008s2414 Capsella rubella HOM05D006654 ORTHO05D008201 3.1e-78 295.4 185 82.2
SEGI_01164 Sequoiadendron giganteum HOM05D006654 ORTHO05D008201 6.8e-78 294.3 185 82.7
HPP92_000346 Vanilla planifolia HOM05D006654 ORTHO05D008201 6.8e-78 294.3 185 83.2
AL8G40500 Arabidopsis lyrata HOM05D006654 ORTHO05D008201 8.9e-78 293.9 185 81.6
C03p63160 Brassica napus HOM05D001045 ORTHO05D004836 8.9e-78 293.9 185 81.1
BolC3t18571H Brassica oleracea HOM05D001045 ORTHO05D004836 8.9e-78 293.9 185 81.1
PSO063G4350 Papaver somniferum HOM05D006654 ORTHO05D008201 8.9e-78 293.9 185 83.8
PSO782G1240 Papaver somniferum HOM05D006654 ORTHO05D008201 8.9e-78 293.9 185 83.8
Aa31LG1G18600 Aethionema arabicum HOM05D006654 ORTHO05D008201 1.5e-77 293.1 185 80.5
AT5G63440 Arabidopsis thaliana HOM05D006654 ORTHO05D008201 1.5e-77 293.1 185 81.6
Mapoly0061s0139 Marchantia polymorpha HOM05D006654 ORTHO05D008201 1.5e-77 293.1 185 81.1
BcaC01g02588 Brassica carinata HOM05D006654 ORTHO05D008201 2.0e-77 292.7 185 80.5
A06p30050 Brassica napus HOM05D001045 ORTHO05D004836 2.0e-77 292.7 185 80.5
BraA06t25957Z Brassica rapa HOM05D001045 ORTHO05D004836 2.0e-77 292.7 185 80.5
Sp2g26520 Schrenkiella parvula HOM05D006654 ORTHO05D008201 2.0e-77 292.7 185 80.5
Thhalv10004858m.g Eutrema salsugineum HOM05D006654 ORTHO05D008201 2.6e-77 292.4 185 80.5
Sabra15G0115700 Salix brachista HOM05D006654 ORTHO05D008201 3.4e-77 292.0 186 83.3
CDE05G1175 Ceratophyllum demersum HOM05D006654 ORTHO05D008201 5.8e-77 291.2 185 81.1
Eucgr.F01379 Eucalyptus grandis HOM05D006654 ORTHO05D008201 5.8e-77 291.2 184 81.5
CARHR277290 Cardamine hirsuta HOM05D006654 ORTHO05D008201 2.2e-76 289.3 185 79.5
Ca_11428_v3 Cicer arietinum L. HOM05D006654 ORTHO05D008201 2.2e-76 289.3 185 80.0
Ca_29862_v3 Cicer arietinum L. HOM05D006654 ORTHO05D008201 2.2e-76 289.3 185 80.0
ATR0561G261 Amborella trichopoda HOM05D006654 ORTHO05D008201 3.7e-76 288.5 186 80.6
Lj5g0001059 Lotus japonicus HOM05D006654 ORTHO05D008201 3.7e-76 288.5 185 80.0
TPR.G39480 Trifolium pratense HOM05D006654 ORTHO05D008201 4.9e-76 288.1 185 80.0
Medtr1g117000 Medicago truncatula HOM05D001235 ORTHO05D005684 8.3e-76 287.3 184 80.4
Pp3c22_11190 Physcomitrium patens HOM05D006654 ORTHO05D008201 1.6e-74 283.1 185 78.4
Pp3c22_11201 Physcomitrium patens HOM05D006654 ORTHO05D008201 1.6e-74 283.1 185 78.4
Hma1.2p1_0014F.1_g009570 Hydrangea macrophylla HOM05D006654 ORTHO05D008201 3.5e-74 282.0 162 87.7
Gohir.A03G052100 Gossypium hirsutum HOM05D006654 ORTHO05D008201 1.7e-73 279.6 147 95.9
SMO364G0616 Selaginella moellendorffii HOM05D006654 ORTHO05D008201 1.7e-73 279.6 185 77.3
Atru.BG.190.p Acer truncatum HOM05D006654 ORTHO05D008201 1.5e-72 276.6 147 94.6
Pp3c18_15000 Physcomitrium patens HOM05D006654 ORTHO05D008201 2.5e-72 275.8 185 77.3
Dinv11162 Davidia involucrata HOM05D006654 ORTHO05D008201 2.3e-70 269.2 175 82.3
Oeu044257.1 Olea europaea HOM05D006654 ORTHO05D008201 1.2e-69 266.9 252 60.3
Zm00001eb305410 Zea mays HOM05D006654 ORTHO05D008201 1.2e-66 256.9 163 80.4
MSTRG.4601 Avicennia marina HOM05D006654 ORTHO05D008201 3.5e-58 228.8 142 83.8
AUR62025924 Chenopodium quinoa HOM05D006654 ORTHO05D008201 1.3e-57 226.9 142 81.7
Hund10171 Selenicereus undatus HOM05D006654 ORTHO05D008201 2.3e-57 226.1 185 68.6
Lalb_Chr06g0164681 Lupinus albus HOM05D006654 ORTHO05D008201 8.1e-55 217.6 185 67.6
Psat6g243960 Pisum sativum HOM05D006654 ORTHO05D008201 1.0e-49 200.7 116 83.6
C09p09330 Brassica napus HOM05D006654 ORTHO05D008201 2.4e-46 189.5 127 79.5
BolC9t53845H Brassica oleracea HOM05D006654 ORTHO05D008201 2.4e-46 189.5 127 79.5
CBR_g21852 Chara braunii HOM05D006654 ORTHO05D008201 2.0e-45 186.4 117 75.2
BcaC04g23328 Brassica carinata HOM05D006654 ORTHO05D008201 9.9e-45 184.1 123 79.7
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 4.6e-42 175.3 110 79.1
LjContig00075g0008356 Lotus japonicus HOM05D006654 ORTHO05D008201 2.2e-36 156.4 131 67.2
SalBow1G2859 Salvia bowleyana HOM05D006654 ORTHO05D008201 4.9e-36 155.2 105 81.0
SalBow1G7869 Salvia bowleyana HOM05D006654 ORTHO05D008201 4.9e-36 155.2 105 81.0
AagrBONN_evm.TU.Sc2ySwM_228.2755 Anthoceros agrestis HOM05D006654 ORTHO05D008201 4.8e-31 138.7 84 77.4
MCO06G092 Micromonas commoda HOM05D006654 ORTHO05D008201 2.9e-28 129.4 191 42.9
SHI10786 Sapria himalayana HOM05D006654 ORTHO05D008201 6.5e-28 128.3 84 72.6
Prupe.2G008500 Prunus persica HOM05D006654 ORTHO05D008201 2.3e-25 119.8 84 79.8
BcaB04g19916 Brassica carinata HOM05D006654 ORTHO05D008201 2.4e-22 109.8 64 87.5
Pp3c19_20620 Physcomitrium patens HOM05D006654 ORTHO05D008201 2.7e-18 96.3 138 47.8
Cre12.g485750 Chlamydomonas reinhardtii HOM05D006654 ORTHO05D008201 1.0e-17 94.4 188 33.5
PRCOL_00005389 Prasinoderma coloniale HOM05D006654 ORTHO05D008201 1.0e-17 94.4 202 32.7
CBR_g70955 Chara braunii HOM05D006654 ORTHO05D008201 1.1e-16 90.9 68 73.5
Lsat_1_v5_gn_6_64721 Lactuca sativa HOM05D001937 ORTHO05D003828 5.3e-14 82.0 67 67.2
RcHm_v2.0_Chr7g0215371 Rosa chinensis HOM05D006654 ORTHO05D008201 6.1e-10 68.6 90 45.6
CAN.G176.15 Capsicum annuum HOM05D002321 ORTHO05D007292 4.4e-08 62.4 38 76.3


User provided reference genes

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