Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A466T78 Lonicera japonica HOM05D007937 ORTHO05D010000 3.0e-153 545.0 257 100.0
CiPaw.05G164900 Carya illinoinensis HOM05D007937 ORTHO05D010000 8.9e-73 277.7 359 44.0
DCAR_016813 Daucus carota HOM05D007937 ORTHO05D010000 6.4e-71 271.6 361 43.2
Haze_07650 Corylus avellana HOM05D007937 ORTHO05D010000 1.3e-68 263.8 360 43.9
TWI73G0154 Tripterygium wilfordii HOM05D007937 ORTHO05D010000 1.4e-65 253.8 243 50.6
Lsat_1_v5_gn_4_109161 Lactuca sativa HOM05D007937 ORTHO05D010000 2.6e-64 249.6 249 51.0
Potri.012G068400 Populus trichocarpa HOM05D007937 ORTHO05D010000 4.4e-64 248.8 364 39.6
Sabra12G0047300 Salix brachista HOM05D007937 ORTHO05D010000 2.9e-63 246.1 364 39.6
Phvul.003G188300 Phaseolus vulgaris HOM05D007937 ORTHO05D010000 1.1e-59 234.2 243 48.6
QL10p017869 Quercus lobata HOM05D007937 ORTHO05D010000 1.6e-58 230.3 363 39.1
Actinidia35012 Actinidia chinensis HOM05D007937 ORTHO05D010000 8.1e-58 228.0 359 39.6
Hma1.2p1_0322F.1_g125050 Hydrangea macrophylla HOM05D007937 ORTHO05D010000 1.3e-55 220.7 362 39.0
Duzib205G0123 Durio zibethinus HOM05D007937 ORTHO05D010000 4.9e-55 218.8 365 36.4
Prupe.5G198200 Prunus persica HOM05D007937 ORTHO05D010000 8.4e-55 218.0 361 38.2
Ciclev10023621m.g Citrus clementina HOM05D007937 ORTHO05D010000 1.1e-54 217.6 359 38.2
Cfa019275 Carpinus fangiana HOM05D007937 ORTHO05D010000 2.4e-54 216.5 359 38.4
Gohir.A12G179200 Gossypium hirsutum HOM05D007937 ORTHO05D010000 7.9e-53 211.5 247 44.9
Thecc.03G094000 Theobroma cacao HOM05D007937 ORTHO05D010000 2.3e-52 209.9 365 35.6
Atru.chr9.343 Acer truncatum HOM05D007937 ORTHO05D010000 2.8e-50 203.0 243 44.4
Medtr4g108900 Medicago truncatula HOM05D007937 ORTHO05D010000 6.2e-50 201.8 358 35.5
Glyma.17G102300 Glycine max HOM05D007937 ORTHO05D010000 8.1e-50 201.4 246 43.5
Gorai.008G195100 Gossypium raimondii HOM05D007937 ORTHO05D010000 1.1e-49 201.1 247 43.7
CSS0004959 Camellia sinensis var. sinensis HOM05D007937 ORTHO05D010000 2.4e-49 199.9 361 36.6
Gohir.D12G181800 Gossypium hirsutum HOM05D007937 ORTHO05D010000 3.1e-49 199.5 247 43.3
MBI07_g10352_MAGBIO Magnolia biondii HOM05D007937 ORTHO05D010000 5.3e-49 198.7 241 44.8
Medtr7g028623 Medicago truncatula HOM05D007937 ORTHO05D010000 1.2e-48 197.6 244 44.3
GSVIVG01013742001 Vitis vinifera HOM05D007937 ORTHO05D010000 3.4e-48 196.1 241 44.4
MD06G1197500 Malus domestica HOM05D007937 ORTHO05D010000 7.6e-48 194.9 361 34.9
Sed0000033 Sechium edule HOM05D007937 ORTHO05D010000 9.9e-48 194.5 361 35.2
ClCG06G016020 Citrullus lanatus HOM05D007937 ORTHO05D010000 2.2e-47 193.4 361 34.9
Psat4g049560 Pisum sativum HOM05D007937 ORTHO05D010000 1.1e-46 191.0 359 35.1
VMungo1215G0396 Vigna mungo HOM05D007937 ORTHO05D010000 1.1e-46 191.0 243 42.4
TPR.G1984 Trifolium pratense HOM05D007937 ORTHO05D010000 1.4e-46 190.7 241 43.2
Manes.14G081700 Manihot esculenta HOM05D007937 ORTHO05D010000 2.4e-46 189.9 365 33.4
CDE07G0962 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 1.3e-44 184.1 203 46.3
TAR371G1098 Trochodendron aralioides HOM05D007937 ORTHO05D010000 1.3e-44 184.1 241 42.7
Eucgr.B00539 Eucalyptus grandis HOM05D007937 ORTHO05D010000 2.3e-44 183.3 246 40.7
Nn3g17327 Nelumbo nucifera HOM05D007937 ORTHO05D010000 8.7e-44 181.4 359 32.6
MELO3C017189.2 Cucumis melo HOM05D007937 ORTHO05D010000 2.5e-43 179.9 363 33.1
Dinv38744 Davidia involucrata HOM05D007937 ORTHO05D010000 3.3e-43 179.5 363 33.9
ECA232G3137 Erigeron canadensis HOM05D007937 ORTHO05D010000 3.3e-43 179.5 278 39.9
THA.LOC104801452 Tarenaya hassleriana HOM05D007937 ORTHO05D010000 3.7e-42 176.0 360 31.7
Rhsim12G0154000 Rhododendron simsii HOM05D007937 ORTHO05D010000 2.4e-41 173.3 359 33.1
Os10g0422300 Oryza sativa ssp. japonica HOM05D007937 ORTHO05D010000 3.1e-41 172.9 249 39.8
AUR62038114 Chenopodium quinoa HOM05D007937 ORTHO05D010000 4.0e-41 172.6 336 33.6
Actinidia19019 Actinidia chinensis HOM05D007937 ORTHO05D010000 1.2e-40 171.0 298 38.3
ATR0208G029 Amborella trichopoda HOM05D007937 ORTHO05D010000 5.8e-40 168.7 359 30.1
Carub.0008s2204 Capsella rubella HOM05D007937 ORTHO05D010000 1.0e-39 167.9 241 39.4
A03p46970 Brassica napus HOM05D007937 ORTHO05D010000 2.9e-39 166.4 361 32.1
AUR62008461 Chenopodium quinoa HOM05D007937 ORTHO05D010000 3.8e-39 166.0 241 39.4
BraA03t13819Z Brassica rapa HOM05D007937 ORTHO05D010000 4.9e-39 165.6 361 31.6
AUR62021634 Chenopodium quinoa HOM05D007937 ORTHO05D010000 4.9e-39 165.6 241 39.4
Zm00001eb047840 Zea mays HOM05D007937 ORTHO05D010000 4.9e-39 165.6 270 38.1
AT5G61370 Arabidopsis thaliana HOM05D007937 ORTHO05D010000 6.5e-39 165.2 241 39.4
BolC7t45024H Brassica oleracea HOM05D007937 ORTHO05D010000 6.5e-39 165.2 359 32.0
AL8G38040 Arabidopsis lyrata HOM05D007937 ORTHO05D010000 8.4e-39 164.9 241 39.0
Sp2g24580 Schrenkiella parvula HOM05D007937 ORTHO05D010000 3.2e-38 162.9 243 38.3
Ca_21806_v3 Cicer arietinum L. HOM05D007937 ORTHO05D010000 7.1e-38 161.8 245 38.0
Cpa.g.sc103.102 Carica papaya HOM05D007937 ORTHO05D010000 1.2e-37 161.0 359 31.2
BraA03t13817Z Brassica rapa HOM05D007937 ORTHO05D010000 1.6e-37 160.6 241 37.8
C07p45010 Brassica napus HOM05D007937 ORTHO05D010000 2.7e-37 159.8 241 38.2
Thhalv10004085m.g Eutrema salsugineum HOM05D007937 ORTHO05D010000 3.5e-37 159.5 241 38.2
Aa31LG11G2050 Aethionema arabicum HOM05D007937 ORTHO05D010000 1.8e-36 157.1 243 36.6
AUR62043076 Chenopodium quinoa HOM05D007937 ORTHO05D010000 2.3e-36 156.8 241 38.2
Aqoxy3G00684 Aquilegia oxysepala HOM05D007937 ORTHO05D010000 8.7e-36 154.8 381 28.9
CsaV3_1G002530 Cucumis sativus L. HOM05D007937 ORTHO05D010000 8.7e-36 154.8 364 30.8
Lalb_Chr12g0196971 Lupinus albus HOM05D007937 ORTHO05D010000 8.7e-36 154.8 243 35.4
arahy.Tifrunner.gnm1.ann1.EN1JYH Arachis hypogaea HOM05D007937 ORTHO05D010000 1.9e-35 153.7 359 30.6
Lj4g0021312 Lotus japonicus HOM05D007937 ORTHO05D010000 1.3e-34 151.0 243 36.2
PGR062G0006 Punica granatum HOM05D007937 ORTHO05D010000 2.1e-29 133.7 88 65.9
PGR083G2710 Punica granatum HOM05D007937 ORTHO05D010000 2.1e-29 133.7 88 65.9
CARHR275130 Cardamine hirsuta HOM05D007937 ORTHO05D010000 8.7e-28 128.3 242 33.9
HanXRQChr16g0502801 Helianthus annuus HOM05D007937 ORTHO05D010000 1.5e-27 127.5 98 59.2
ECA238G4024 Erigeron canadensis HOM05D002609 ORTHO05D002820 3.3e-27 126.3 100 58.0
COL.COLO4_36944 Corchorus olitorius HOM05D007937 ORTHO05D010000 4.3e-27 125.9 234 35.9
ECA236G3917 Erigeron canadensis HOM05D007937 ORTHO05D010000 5.0e-23 112.5 76 68.4
Glyma.05G024902 Glycine max HOM05D007937 ORTHO05D010000 8.5e-23 111.7 172 39.5
COL.COLO4_36946 Corchorus olitorius HOM05D007937 ORTHO05D010000 3.6e-13 79.7 57 57.9
CDE04G0941 Ceratophyllum demersum HOM05D007937 ORTHO05D010000 3.9e-12 76.3 61 50.8
MBI06_g05054_MAGBIO Magnolia biondii HOM05D005362 ORTHO05D006895 3.3e-11 73.2 240 26.7
MD14G1204900 Malus domestica HOM05D007937 ORTHO05D010000 9.7e-11 71.6 44 70.5
HPP92_018764 Vanilla planifolia HOM05D007937 ORTHO05D010000 1.3e-10 71.2 98 43.9
unitig_26.g9670 Utricularia gibba HOM05D005362 ORTHO05D006895 4.8e-10 69.3 255 23.1
Migut.B00504 Erythranthe guttata HOM05D005362 ORTHO05D006895 4.1e-09 66.2 240 24.2
Medtr8g094650 Medicago truncatula HOM05D005362 ORTHO05D006895 1.0e-07 61.6 255 23.9
Cc11_g04710 Coffea canephora HOM05D005362 ORTHO05D006895 1.3e-07 61.2 154 28.6
TAR371G1139 Trochodendron aralioides HOM05D005362 ORTHO05D006895 1.3e-07 61.2 151 27.2
Lj5P134T43 Lonicera japonica HOM05D005362 ORTHO05D006895 1.7e-07 60.8 151 27.8
GSVIVG01008125001 Vitis vinifera HOM05D005362 ORTHO05D006895 1.7e-07 60.8 264 23.5
Psat7g043680 Pisum sativum HOM05D005362 ORTHO05D006895 2.9e-07 60.1 256 24.2
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 3.8e-07 59.7 206 24.8
Aqoxy3G03650 Aquilegia oxysepala HOM05D005362 ORTHO05D006895 5.0e-07 59.3 154 30.5
Sc10g0009660 Simmondsia chinensis HOM05D005362 ORTHO05D006895 6.5e-07 58.9 253 23.7
Manes.06G082600 Manihot esculenta HOM05D005362 ORTHO05D006895 8.5e-07 58.5 153 27.5
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 8.5e-07 58.5 227 24.2
MSTRG.11331 Avicennia marina HOM05D005362 ORTHO05D006895 1.1e-06 58.2 156 27.6
CDE10G0094 Ceratophyllum demersum HOM05D005362 ORTHO05D006895 1.1e-06 58.2 242 23.1
Sp2g24260 Schrenkiella parvula HOM05D005362 ORTHO05D006895 1.1e-06 58.2 244 23.4
Hund02565 Selenicereus undatus HOM05D005362 ORTHO05D006895 1.1e-06 58.2 240 24.2
AT5G60960 Arabidopsis thaliana HOM05D005362 ORTHO05D006895 1.5e-06 57.8 244 22.5
HanXRQChr05g0154331 Helianthus annuus HOM05D005362 ORTHO05D006895 1.5e-06 57.8 159 29.6
CARHR274640 Cardamine hirsuta HOM05D005362 ORTHO05D006895 1.9e-06 57.4 244 23.0
AUR62029951 Chenopodium quinoa HOM05D005362 ORTHO05D006895 2.5e-06 57.0 253 23.3
FvH4_5g09340 Fragaria vesca HOM05D005764 ORTHO05D006600 2.5e-06 57.0 193 27.5
SGA_v2.0_scaffold28G11735 Striga asiatica HOM05D005362 ORTHO05D006895 4.2e-06 56.2 242 22.7
CAN.G1228.5 Capsicum annuum HOM05D005362 ORTHO05D006895 5.5e-06 55.8 151 25.2
CSS0010906 Camellia sinensis var. sinensis HOM05D005362 ORTHO05D006895 7.2e-06 55.5 151 26.5
CSS0049665 Camellia sinensis var. sinensis HOM05D005362 ORTHO05D006895 7.2e-06 55.5 151 26.5
Haze_22893 Corylus avellana HOM05D005362 ORTHO05D006895 7.2e-06 55.5 150 25.3
THA.LOC104804616 Tarenaya hassleriana HOM05D005362 ORTHO05D006895 9.4e-06 55.1 293 21.2


User provided reference genes

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