Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 0.0e+00 1661.7 944 100.0
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 0.0e+00 1156.7 869 76.4
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1118.2 863 72.4
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1118.2 863 72.4
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1117.4 864 70.1
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 0.0e+00 1094.7 882 66.7
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 1.9e-311 1072.4 864 65.9
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 3.2e-309 1065.1 864 65.6
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 1.7e-307 1059.3 977 62.4
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 6.6e-307 1057.4 870 67.7
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 4.7e-305 1051.2 838 67.1
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 1.7e-302 1042.7 974 62.3
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 3.5e-300 1035.0 879 72.4
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 3.0e-299 1031.9 862 64.7
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 1.9e-298 1029.2 861 67.7
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 7.3e-298 1027.3 886 63.4
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 1.8e-296 1022.7 860 67.1
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 1.2e-295 1020.0 840 68.9
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 3.8e-294 1015.0 853 63.9
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 1.4e-293 1013.1 895 66.9
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 1.4e-293 1013.1 895 66.9
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 7.1e-293 1010.7 895 66.8
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 6.0e-292 1007.7 855 71.7
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 6.0e-292 1007.7 830 64.9
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 2.3e-291 1005.7 850 63.5
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 1.5e-290 1003.0 976 57.5
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 5.6e-290 1001.1 858 69.6
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 1.6e-289 999.6 859 67.6
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 1.8e-288 996.1 887 66.0
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 3.1e-288 995.3 863 64.1
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 1.5e-287 993.0 966 60.0
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 2.0e-287 992.6 922 65.8
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 3.8e-286 988.4 883 61.7
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 8.4e-286 987.3 869 61.3
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 1.4e-285 986.5 849 62.8
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 4.2e-285 984.9 863 63.0
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 2.7e-284 982.2 863 61.5
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 3.5e-284 981.9 844 62.8
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 4.6e-284 981.5 843 62.9
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 1.7e-283 979.5 836 67.1
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 2.3e-283 979.2 883 64.9
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 3.0e-283 978.8 847 67.3
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 6.6e-283 977.6 843 63.7
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 8.7e-283 977.2 850 62.5
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 1.5e-282 976.5 845 62.1
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 3.3e-282 975.3 890 59.8
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 9.6e-282 973.8 843 65.4
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 1.8e-280 969.5 843 61.8
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 2.0e-279 966.1 842 65.2
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 5.8e-279 964.5 837 61.6
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 7.6e-279 964.1 848 65.9
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 6.4e-278 961.1 561 83.8
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 5.5e-277 958.0 839 63.9
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 1.6e-276 956.4 949 59.5
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 3.0e-275 952.2 844 61.0
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 6.7e-275 951.0 852 64.7
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 1.1e-274 950.3 897 61.9
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 1.5e-274 949.9 838 66.5
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 3.3e-274 948.7 605 78.2
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 1.1e-272 943.7 832 62.6
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 1.0e-270 937.2 869 69.0
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 1.7e-270 936.4 807 68.6
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 1.8e-267 926.4 865 62.1
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 1.5e-266 923.3 832 63.3
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 4.3e-266 921.8 833 62.4
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 3.7e-265 918.7 987 56.4
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 7.6e-263 911.0 909 62.2
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 1.9e-261 906.4 901 61.9
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 5.5e-261 904.8 854 63.5
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 6.7e-259 897.9 836 57.4
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 3.8e-254 882.1 845 58.3
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 2.7e-252 875.9 837 56.4
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 1.8e-251 873.2 845 56.3
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 3.0e-251 872.5 844 55.5
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 2.0e-250 869.8 845 55.5
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 4.3e-250 868.6 844 56.0
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 2.4e-248 862.8 838 56.6
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 5.3e-248 861.7 858 57.7
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 7.7e-247 857.8 852 55.0
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 1.0e-246 857.4 839 58.8
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 1.3e-246 857.1 852 54.9
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 3.8e-246 855.5 852 54.9
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 3.6e-244 849.0 849 60.4
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 1.4e-243 847.0 866 54.2
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 2.6e-239 832.8 892 53.3
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 1.7e-238 830.1 898 52.6
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 2.1e-236 823.2 841 53.5
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 1.9e-229 800.0 599 67.8
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 2.0e-226 790.0 806 62.7
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 5.4e-224 781.9 837 52.9
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 1.7e-222 776.9 833 52.2
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 2.6e-218 763.1 555 67.6
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 8.0e-204 714.9 662 59.7
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 4.4e-194 682.6 647 62.3
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 5.8e-194 682.2 647 62.3
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 1.1e-184 651.4 375 83.2
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 1.8e-179 634.0 399 77.9
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 4.0e-179 632.9 546 58.2
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 9.9e-178 628.2 550 57.6
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 3.0e-174 616.7 550 57.6
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 1.8e-158 564.3 566 52.3
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 9.0e-155 552.0 318 84.9
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 5.7e-141 506.1 318 78.6
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.2e-137 494.2 318 74.8
Cpa.g.sc13.49 Carica papaya HOM05D004216 ORTHO05D004926 1.8e-115 421.4 549 52.5
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 5.0e-113 413.3 317 65.0
vmacro17678 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 1.1e-107 395.6 507 60.7
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 3.8e-105 387.1 352 58.0
Rhsim08G0137900 Rhododendron simsii HOM05D004216 ORTHO05D004926 7.5e-101 372.9 521 57.0
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 1.4e-91 342.0 206 80.6
Haze_18609 Corylus avellana HOM05D004216 ORTHO05D004926 2.5e-80 304.7 208 70.2
Gohir.D07G042780 Gossypium hirsutum HOM05D004216 ORTHO05D004926 4.9e-68 263.8 173 73.4
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 1.1e-62 246.1 216 56.9
PGSC0003DMG400005622 Solanum tuberosum HOM05D004216 ORTHO05D004926 1.8e-54 218.8 373 47.2
Cpa.g.sc13.56 Carica papaya HOM05D004216 ORTHO05D004926 4.5e-53 214.2 145 68.3
Actinidia39807 Actinidia chinensis HOM05D004216 ORTHO05D004926 6.9e-46 190.3 232 50.4
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 4.9e-44 184.1 353 39.4
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 2.7e-42 178.3 104 83.7
Cfa022283 Carpinus fangiana HOM05D004216 ORTHO05D004926 1.2e-37 162.9 535 26.2
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 2.0e-37 162.2 459 26.8
arahy.Tifrunner.gnm1.ann1.1HJL67 Arachis hypogaea HOM05D004216 ORTHO05D004926 3.2e-35 154.8 92 77.2
TAR629G2837 Trochodendron aralioides HOM05D004216 ORTHO05D004926 1.0e-33 149.8 123 59.3
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 1.8e-30 139.0 444 28.4
Zm00001eb099360 Zea mays HOM05D004216 ORTHO05D004926 3.8e-28 131.3 103 61.2
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 9.4e-27 126.7 328 31.7
SHI18921 Sapria himalayana HOM05D004216 ORTHO05D004926 2.7e-26 125.2 111 56.8
arahy.Tifrunner.gnm1.ann1.1842CP Arachis hypogaea HOM05D004216 ORTHO05D004926 1.5e-24 119.4 156 47.4
SHI18919 Sapria himalayana HOM05D004216 ORTHO05D004926 5.7e-24 117.5 114 63.2
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 9.7e-24 116.7 68 80.9
MCO16G579 Micromonas commoda HOM05D004216 ORTHO05D004926 9.7e-24 116.7 379 28.5
SalBow8G1216 Salvia bowleyana HOM05D004216 ORTHO05D004926 2.8e-23 115.2 80 67.5
Lsat_1_v5_gn_4_30120 Lactuca sativa HOM05D004216 ORTHO05D004926 5.9e-21 107.5 88 60.2
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 1.3e-15 89.7 56 75.0
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 1.3e-15 89.7 98 49.0
Medtr4g113495 Medicago truncatula HOM05D004216 ORTHO05D004926 4.5e-13 81.3 70 62.9
Medtr4g113360 Medicago truncatula HOM05D004216 ORTHO05D004926 1.9e-11 75.9 74 55.4
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 2.7e-10 72.0 115 46.1
TWI60G0758 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 1.8e-09 69.3 48 70.8
Os09g0410300 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 2.8e-07 62.0 67 50.7
SHI18922 Sapria himalayana HOM05D004216 ORTHO05D004926 1.1e-06 60.1 38 68.4


User provided reference genes

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