Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 0.0e+00 1338.9 746 100.0
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 1.4e-272 943.0 789 69.8
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 2.1e-263 912.5 751 67.9
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 6.1e-231 804.7 758 58.0
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 5.0e-225 785.0 760 56.2
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 1.4e-219 766.9 757 55.4
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 1.4e-219 766.9 762 60.6
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 7.7e-218 761.1 759 54.4
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.0e-217 760.8 757 55.2
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 5.0e-217 758.4 750 54.8
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 1.5e-216 756.9 759 54.2
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 3.0e-214 749.2 806 51.9
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.7e-209 733.4 770 59.1
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 1.3e-204 717.2 752 60.0
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 2.4e-203 713.0 755 52.8
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 5.9e-202 708.4 760 51.3
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 1.3e-201 707.2 756 58.6
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 3.1e-198 696.0 756 51.6
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 9.8e-197 691.0 758 50.1
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 1.1e-195 687.6 757 50.7
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 5.4e-195 685.3 757 50.5
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 1.2e-194 684.1 750 50.0
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 2.0e-194 683.3 750 51.1
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 7.8e-194 681.4 755 51.5
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 2.3e-193 679.9 762 50.3
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 1.5e-192 677.2 756 51.2
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 1.9e-192 676.8 759 52.6
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 1.9e-192 676.8 759 49.8
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 7.3e-192 674.9 757 57.7
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 2.1e-191 673.3 767 48.9
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 2.3e-190 669.8 759 49.5
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 1.5e-189 667.2 759 49.5
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 5.8e-189 665.2 760 49.1
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 2.9e-188 662.9 622 57.7
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 1.9e-187 660.2 759 49.4
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 2.4e-187 659.8 770 47.9
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 2.4e-187 659.8 761 53.1
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 3.2e-187 659.4 762 49.0
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 3.9e-185 652.5 760 48.0
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 1.2e-183 647.5 761 48.2
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.6e-183 647.1 761 47.4
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 2.3e-182 643.3 759 49.1
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 1.4e-179 634.0 749 47.1
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 2.7e-178 629.8 762 47.9
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 3.0e-177 626.3 759 47.6
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 4.3e-176 622.5 757 46.6
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 5.6e-176 622.1 757 53.2
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 9.6e-176 621.3 783 46.9
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 9.6e-176 621.3 757 46.1
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.1e-175 620.2 757 46.0
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.8e-175 619.8 757 46.1
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 8.1e-175 618.2 757 46.0
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.4e-174 616.7 758 46.6
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 6.8e-174 615.1 759 47.3
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 2.6e-173 613.2 756 46.7
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.3e-172 610.9 1122 38.1
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 2.9e-172 609.8 793 46.8
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 8.4e-172 608.2 782 46.3
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 2.4e-171 606.7 760 46.1
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 3.2e-171 606.3 759 54.0
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.6e-170 604.0 756 46.4
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 7.8e-170 601.7 829 44.3
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 5.1e-169 599.0 775 45.9
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.5e-168 597.4 743 46.4
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 5.6e-168 595.5 757 51.4
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.1e-166 591.3 760 45.1
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 1.3e-164 584.3 757 45.6
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.8e-164 582.8 758 45.3
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 4.2e-163 579.3 759 45.6
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.4e-158 563.5 683 52.6
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 5.3e-158 562.4 729 46.6
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 6.9e-158 562.0 743 44.4
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 2.0e-157 560.5 711 47.5
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 7.6e-157 558.5 751 51.3
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 2.7e-154 550.1 618 51.6
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 1.3e-153 547.7 761 42.3
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.9e-147 527.3 753 42.5
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.0e-145 520.0 757 41.7
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 6.7e-145 518.8 756 39.9
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 5.3e-142 509.2 770 42.5
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 6.9e-142 508.8 627 48.3
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 9.0e-142 508.4 770 42.5
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.9e-139 500.7 771 42.2
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.6e-138 497.7 514 54.9
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 6.1e-138 495.7 769 39.8
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.0e-137 493.4 736 42.8
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 2.0e-133 480.7 707 43.0
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 4.5e-133 479.6 405 63.0
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 2.6e-128 463.8 752 39.9
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 7.4e-128 462.2 468 54.7
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 9.7e-128 461.8 577 48.2
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 9.1e-126 455.3 775 41.4
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 1.2e-125 454.9 758 39.3
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 1.2e-125 454.9 758 39.3
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 2.0e-125 454.1 754 38.2
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 4.5e-125 453.0 754 37.9
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 1.7e-124 451.1 761 40.1
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 2.9e-124 450.3 754 37.8
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 1.4e-123 448.0 754 38.1
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 1.4e-123 448.0 736 42.8
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 5.5e-123 446.0 756 38.6
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 7.2e-123 445.7 756 38.6
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 7.2e-123 445.7 756 38.5
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 3.6e-122 443.4 756 37.6
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 3.6e-122 443.4 756 37.7
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 2.0e-120 437.6 742 40.3
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.3e-119 434.9 754 36.7
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 2.8e-119 433.7 615 44.4
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 2.8e-119 433.7 630 41.6
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 1.2e-117 428.3 602 43.4
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 6.5e-116 422.5 754 35.5
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 4.7e-114 416.4 727 39.1
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 3.6e-106 390.2 728 44.8
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.1e-102 377.1 334 59.6
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 5.4e-102 376.3 321 62.0
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 1.2e-101 375.2 1262 27.7
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 3.0e-89 334.0 311 56.3
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 5.6e-83 313.2 443 44.7
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 2.6e-80 304.3 650 32.9
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 6.4e-79 299.7 360 48.1
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 2.3e-76 291.2 540 35.4
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 1.7e-68 265.0 271 52.8
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 5.1e-68 263.5 300 45.3
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 2.5e-67 261.2 187 67.4
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 2.6e-64 251.1 557 34.3
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 4.1e-62 243.8 394 45.2
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 3.0e-60 237.7 400 41.0
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.2e-58 232.3 431 38.7
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.1e-58 231.5 178 63.5
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 3.6e-58 230.7 359 39.3
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 4.0e-57 227.3 1041 23.7
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 2.1e-45 188.3 299 35.1
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.3e-42 179.1 261 39.8
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 6.2e-42 176.8 255 38.8
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 6.9e-41 173.3 138 61.6
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 7.6e-40 169.9 300 34.0
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.9e-38 165.2 319 37.3
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 9.3e-38 162.9 335 34.3
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 3.4e-32 144.4 121 58.7
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 7.1e-30 136.7 186 40.9
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 7.1e-30 136.7 473 27.9
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 1.2e-29 136.0 101 65.3
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.6e-29 135.6 112 63.4
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 3.5e-29 134.4 282 31.9
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 2.5e-27 128.3 89 67.4
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 5.7e-27 127.1 219 35.2
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 9.7e-27 126.3 84 69.0
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 9.7e-27 126.3 275 29.8
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 1.3e-26 125.9 170 41.8
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 2.8e-26 124.8 88 70.5
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 9.0e-25 119.8 81 74.1
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 2.6e-24 118.2 79 68.4
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 5.9e-24 117.1 117 50.4
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 5.0e-23 114.0 212 61.3
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 5.1e-20 104.0 180 36.1
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 3.3e-19 101.3 149 40.9
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 4.3e-19 100.9 107 48.6
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 1.1e-17 96.3 77 53.2
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 1.5e-16 92.4 77 53.2
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 5.9e-16 90.5 81 54.3
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 5.9e-16 90.5 61 62.3
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 7.7e-16 90.1 61 62.3
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 6.1e-13 80.5 74 58.1
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.8e-12 79.0 56 58.9
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.3e-12 78.6 56 57.1
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.0e-11 75.5 79 44.3
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 7.4e-11 73.6 74 55.4
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 3.7e-10 71.2 134 39.6
Actinidia02458 Actinidia chinensis HOM05D003469 ORTHO05D004084 6.3e-10 70.5 68 52.9
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 6.3e-10 70.5 79 39.2
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 5.9e-08 63.9 51 58.8
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 3.2e-06 58.2 180 27.2


User provided reference genes

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