Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 0.0e+00 1630.2 820 100.0
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 1232.6 942 71.0
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 1225.7 916 70.9
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 1199.5 919 69.9
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 1171.8 918 69.3
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 1164.1 935 66.8
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 1161.4 917 67.7
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 1159.1 916 67.6
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 1153.3 914 67.1
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 1146.7 918 66.4
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 1145.2 917 66.3
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 1144.4 915 67.1
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 1137.5 918 65.7
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 1137.1 919 66.4
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 1134.0 914 66.0
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 1133.2 914 65.9
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 1132.9 918 66.1
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 1129.8 940 64.9
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 1129.4 914 65.8
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 1128.6 914 65.9
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 1126.3 919 65.6
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 1125.9 911 66.3
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 1125.2 922 65.7
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 1124.0 917 65.5
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 1123.6 911 66.2
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1120.5 936 64.9
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 0.0e+00 1119.4 917 64.9
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1116.7 917 64.1
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 1114.8 921 65.0
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 1113.2 919 63.9
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 1113.2 917 64.1
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 1110.9 918 64.9
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1107.8 917 63.9
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1107.4 917 63.8
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1105.5 924 63.1
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 1103.6 946 63.6
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 1087.0 918 64.5
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 1083.6 915 63.4
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 1080.9 914 62.9
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 0.0e+00 1079.7 944 62.4
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 1079.7 917 63.1
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 1078.9 918 63.7
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 1078.5 918 62.4
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 1078.2 918 62.5
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 1077.0 917 63.6
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 1076.2 908 62.7
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 1075.1 915 62.5
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 1075.1 918 63.3
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 5.6e-312 1074.7 918 63.4
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 5.6e-312 1074.3 920 62.5
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 1.7e-311 1072.4 920 63.0
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 1.7e-311 1072.4 932 62.6
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 2.8e-311 1071.6 923 63.4
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 3.6e-309 1064.7 909 62.7
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 3.6e-309 1064.7 918 63.0
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 3.0e-308 1061.6 939 61.9
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 1.3e-306 1056.2 918 62.1
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 1.3e-306 1056.2 915 62.2
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 3.1e-305 1051.6 917 61.7
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 4.7e-301 1037.7 877 63.7
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 3.7e-298 1028.1 792 67.8
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 9.2e-297 1023.5 922 60.4
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 7.8e-296 1020.4 918 60.5
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 3.0e-295 1018.5 894 61.3
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 1.1e-294 1016.5 884 62.6
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 5.6e-294 1014.2 922 60.1
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 3.1e-292 1008.4 913 59.9
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 8.9e-292 1006.9 939 59.4
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 1.3e-290 1003.0 706 72.2
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 2.2e-290 1002.3 941 58.7
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 2.4e-289 998.8 787 66.1
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 2.0e-288 995.7 891 60.0
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 4.6e-288 994.6 914 59.6
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 6.0e-288 994.2 915 59.7
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 1.6e-285 986.1 790 65.3
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 1.1e-284 983.4 799 64.8
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 5.2e-284 981.1 919 57.5
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 1.2e-283 979.9 797 64.9
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 2.0e-283 979.2 796 64.7
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 8.3e-282 973.8 720 69.6
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 9.5e-278 960.3 918 58.0
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 1.6e-277 959.5 787 63.8
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 1.1e-276 956.8 787 64.0
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 6.8e-276 954.1 803 63.4
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 1.5e-275 953.0 915 57.8
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 2.0e-275 952.6 782 64.5
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 2.4e-273 945.7 925 57.2
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 4.1e-273 944.9 782 63.3
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 2.1e-272 942.6 925 57.2
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 1.5e-270 936.4 782 63.4
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 4.4e-267 924.9 833 62.5
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 5.8e-267 924.5 803 60.4
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 2.3e-247 859.4 847 56.6
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 3.7e-237 825.5 645 68.4
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 1.3e-231 807.0 811 56.2
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 1.0e-194 684.5 815 47.4
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 3.8e-194 682.6 866 45.7
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 2.6e-190 669.8 462 76.8
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 9.8e-190 667.9 808 46.9
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 1.5e-174 617.5 409 77.0
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 1.6e-168 597.4 787 44.9
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 9.9e-158 561.6 544 60.3
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 3.1e-151 540.0 637 52.4
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 6.9e-151 538.9 434 64.3
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 1.2e-147 528.1 434 64.1
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 2.0e-142 510.8 866 39.4
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.1e-140 505.0 395 67.8
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 2.6e-134 483.8 384 64.3
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 3.7e-128 463.4 369 65.3
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 1.8e-127 461.1 356 66.6
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 5.7e-121 439.5 506 50.2
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 4.5e-110 403.3 389 61.4
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 2.3e-106 391.0 380 55.0
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 1.0e-101 375.6 406 52.0
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 5.3e-95 353.2 255 72.9
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 9.4e-92 342.4 489 42.1
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 5.3e-87 326.6 189 87.3
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 1.8e-82 311.6 330 49.7
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 8.6e-77 292.7 234 64.1
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 2.2e-72 278.1 344 47.1
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 1.4e-71 275.4 199 69.8
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 7.8e-70 269.6 225 60.0
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 5.6e-60 236.9 178 68.0
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 9.8e-57 226.1 205 57.1
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 2.3e-53 214.9 562 30.8
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 3.9e-45 187.6 360 36.1
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 2.8e-43 181.4 134 67.9
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 6.8e-42 176.8 589 27.3
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 1.4e-34 152.5 103 70.9
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 1.5e-33 149.1 256 39.5
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 9.9e-33 146.4 296 34.8
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 6.4e-32 143.7 116 65.5
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 5.1e-29 134.0 231 40.3
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 1.6e-22 112.5 131 51.1
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 2.7e-22 111.7 98 60.2
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 7.9e-22 110.2 54 88.9
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 1.5e-20 105.9 148 48.6
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 5.6e-20 104.0 86 57.0
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 9.6e-20 103.2 210 34.8
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 8.4e-16 90.1 72 69.4
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 8.4e-16 90.1 206 32.0
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 8.4e-08 63.5 91 44.0
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 8.4e-08 63.5 81 44.4
Lsat_1_v5_gn_8_83220 Lactuca sativa HOM05D003492 ORTHO05D016080 7.1e-07 60.5 52 57.7
Lsat_1_v5_gn_6_70980 Lactuca sativa HOM05D000917 ORTHO05D016080 1.2e-06 59.7 44 65.9
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.2e-06 59.7 75 49.3
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.2e-06 59.7 75 49.3


User provided reference genes

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