Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 3.4e-186 654.8 325 100.0
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 7.9e-167 590.5 329 91.5
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.7e-127 459.1 300 80.7
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 5.2e-126 454.9 297 79.5
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 8.8e-126 454.1 298 79.5
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.4e-125 451.8 298 78.5
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 4.8e-124 448.4 298 80.2
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 7.0e-123 444.5 297 76.8
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 5.9e-122 441.4 297 77.1
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 4.2e-120 435.3 302 74.2
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 1.2e-119 433.7 297 73.1
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 1.4e-118 430.3 292 74.0
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 1.8e-118 429.9 297 74.1
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 3.0e-118 429.1 298 75.5
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 3.0e-118 429.1 297 74.7
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 4.0e-118 428.7 306 71.9
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 2.6e-117 426.0 295 73.2
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 5.7e-117 424.9 297 75.4
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 1.3e-116 423.7 312 72.8
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.7e-116 423.3 300 73.3
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.7e-116 423.3 299 74.2
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 2.2e-116 422.9 299 72.9
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 2.8e-116 422.5 291 74.6
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 1.1e-115 420.6 297 73.1
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 1.4e-115 420.2 300 71.3
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 1.8e-115 419.9 299 72.9
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.8e-115 419.9 304 74.3
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.8e-115 419.9 304 74.3
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 3.1e-115 419.1 293 72.0
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 4.1e-115 418.7 287 73.2
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 5.4e-115 418.3 299 71.9
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 1.3e-113 413.7 297 72.7
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 1.7e-113 413.3 292 72.9
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 6.5e-113 411.4 297 70.4
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 6.5e-113 411.4 301 71.1
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 5.5e-112 408.3 291 72.5
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 5.5e-112 408.3 293 72.4
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 9.4e-112 407.5 301 70.4
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 1.2e-111 407.1 299 71.6
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 2.1e-111 406.4 284 73.2
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 3.6e-111 405.6 282 73.8
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 8.0e-111 404.4 293 71.0
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.0e-110 404.1 283 72.4
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 1.8e-110 403.3 306 68.6
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 2.3e-110 402.9 297 69.7
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 3.0e-110 402.5 294 69.0
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 4.0e-110 402.1 298 72.1
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 6.8e-110 401.4 303 68.6
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 8.8e-110 401.0 298 70.8
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 1.2e-109 400.6 279 72.4
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 1.2e-109 400.6 298 72.1
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 1.5e-109 400.2 301 67.8
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 1.5e-109 400.2 298 71.8
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 2.0e-109 399.8 293 69.3
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 2.0e-109 399.8 311 69.1
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 2.6e-109 399.4 301 67.8
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 2.6e-109 399.4 307 69.7
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 3.4e-109 399.1 301 68.4
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 3.4e-109 399.1 298 71.1
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 9.8e-109 397.5 298 69.5
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 1.3e-108 397.1 288 70.5
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.3e-108 397.1 298 70.8
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 1.7e-108 396.7 284 71.8
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.7e-108 396.7 307 69.1
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 1.7e-108 396.7 283 72.4
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 1.7e-108 396.7 294 69.0
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 1.7e-108 396.7 300 69.0
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 2.8e-108 396.0 296 68.2
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 8.3e-108 394.4 280 71.1
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 3.1e-107 392.5 280 72.1
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 9.2e-107 391.0 296 68.9
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.2e-106 390.6 292 68.5
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 1.0e-105 387.5 299 67.9
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.0e-105 387.5 296 68.2
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 6.6e-105 384.8 296 67.6
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 8.6e-105 384.4 300 67.0
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 1.9e-104 383.3 298 67.1
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 3.3e-104 382.5 280 70.7
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 4.3e-104 382.1 297 69.7
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 4.3e-104 382.1 296 69.9
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 7.3e-104 381.3 299 68.2
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 9.5e-104 380.9 301 66.8
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.2e-103 380.6 297 67.7
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 1.2e-103 380.6 287 68.6
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 1.2e-103 380.6 296 69.6
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 2.1e-103 379.8 299 67.2
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.2e-101 374.0 292 68.2
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 1.2e-101 374.0 293 67.2
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 1.2e-101 374.0 296 65.5
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 1.5e-101 373.6 259 72.2
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 4.9e-100 368.6 221 84.6
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 1.1e-99 367.5 297 64.3
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 2.4e-99 366.3 296 64.2
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 3.2e-99 365.9 283 68.9
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 3.2e-99 365.9 274 69.7
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 3.2e-99 365.9 296 64.2
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 5.4e-99 365.2 285 67.4
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 9.2e-99 364.4 296 63.9
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 9.2e-99 364.4 287 64.8
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 1.6e-98 363.6 293 65.9
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 2.0e-98 363.2 280 66.8
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 4.6e-98 362.1 290 64.8
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 1.7e-97 360.1 287 65.5
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 2.5e-96 356.3 300 63.3
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 7.3e-96 354.8 242 73.6
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 6.8e-94 348.2 260 70.8
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 3.7e-92 342.4 293 61.8
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 8.3e-92 341.3 283 64.7
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 3.2e-91 339.3 294 62.2
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 2.0e-90 336.7 298 63.8
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 7.8e-90 334.7 299 62.9
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 7.8e-90 334.7 297 63.0
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.7e-89 333.6 242 69.8
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 3.0e-89 332.8 284 60.9
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 5.6e-88 328.6 279 61.3
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 1.8e-86 323.6 200 77.0
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 4.0e-86 322.4 233 71.2
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.9e-84 316.2 237 71.7
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 2.7e-82 309.7 187 79.1
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 9.5e-80 301.2 307 57.7
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 3.4e-77 292.7 290 57.6
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 5.4e-75 285.4 300 51.3
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 6.0e-74 282.0 233 63.1
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.8e-71 273.1 214 69.2
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 3.6e-71 272.7 274 55.8
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.1e-70 271.2 221 66.1
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 1.4e-70 270.8 271 55.0
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.4e-70 270.8 218 67.0
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.4e-70 270.8 218 67.0
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.3e-68 264.2 208 67.3
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 4.3e-64 249.2 219 57.1
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.3e-63 247.7 225 60.4
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 4.8e-63 245.7 193 69.4
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.0e-61 240.4 223 59.2
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 2.4e-59 233.4 218 59.2
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 7.1e-59 231.9 140 79.3
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 5.1e-57 225.7 139 71.9
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 4.3e-56 222.6 203 56.7
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 3.6e-55 219.5 251 52.6
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 1.8e-54 217.2 197 65.5
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 2.2e-52 210.3 145 71.7
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 2.4e-51 206.8 247 50.6
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 4.2e-51 206.1 126 74.6
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 6.0e-50 202.2 194 53.6
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 2.6e-37 160.2 225 44.0
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 3.9e-33 146.4 118 55.1
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.1e-32 144.8 172 57.0
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 5.7e-32 142.5 179 47.5
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 5.7e-32 142.5 179 47.5
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 2.2e-31 140.6 193 45.1
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 2.8e-31 140.2 188 50.5
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 3.7e-31 139.8 232 36.6
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 4.8e-31 139.4 279 41.2
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 6.9e-30 135.6 84 76.2
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 1.2e-29 134.8 82 75.6
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 3.2e-27 126.7 128 60.2
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 5.5e-27 125.9 81 70.4
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 7.4e-24 115.5 125 57.6
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 1.3e-23 114.8 107 55.1
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.8e-22 110.9 123 48.0
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.5e-21 107.8 80 66.2
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 2.2e-20 104.0 129 43.4
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 9.4e-19 98.6 65 67.7
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 4.4e-16 89.7 80 56.2
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.8e-14 84.3 79 67.1
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 4.1e-14 83.2 176 38.1
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 2.5e-11 73.9 37 78.4
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 1.0e-09 68.6 64 51.6
Sc23g0002180 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.4e-09 68.2 96 46.9
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 1.8e-09 67.8 93 53.8
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 5.2e-09 66.2 35 71.4
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 1.2e-08 65.1 104 48.1
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 3.3e-08 63.5 110 37.3
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 9.7e-08 62.0 79 43.0
Cc02_g39210 Coffea canephora HOM05D003601 ORTHO05D004896 2.2e-07 60.8 90 46.7
Sabra17G0123400 Salix brachista HOM05D000390 ORTHO05D001192 2.8e-07 60.5 153 32.0
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 6.3e-07 59.3 39 56.4
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.4e-06 58.2 43 60.5
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.4e-06 58.2 43 60.5
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 2.4e-06 57.4 70 42.9
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 5.3e-06 56.2 71 43.7


User provided reference genes

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