Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 0.0e+00 3575.0 1811 100.0
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 0.0e+00 2181.4 1956 61.8
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 0.0e+00 2016.1 1936 56.9
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 0.0e+00 1989.2 1967 57.2
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 0.0e+00 1971.1 1936 56.6
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 0.0e+00 1946.0 1935 56.8
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1939.1 1937 56.1
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 0.0e+00 1935.6 1937 56.5
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 0.0e+00 1916.0 1943 55.5
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 0.0e+00 1915.6 1939 54.9
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 0.0e+00 1903.6 2143 51.2
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 0.0e+00 1890.2 1935 54.8
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 0.0e+00 1882.8 1937 54.3
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 0.0e+00 1875.9 1962 54.9
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 0.0e+00 1870.1 1940 53.8
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 0.0e+00 1868.6 1936 54.3
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 0.0e+00 1865.5 1730 58.7
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 0.0e+00 1861.3 1982 52.9
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 0.0e+00 1849.7 1935 54.0
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 0.0e+00 1822.0 1948 52.7
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 0.0e+00 1805.8 1917 53.4
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 0.0e+00 1805.0 1941 52.4
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1801.2 1927 53.2
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1796.2 1927 53.0
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 0.0e+00 1784.2 1762 56.1
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 0.0e+00 1777.7 1877 54.3
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 0.0e+00 1773.1 1824 55.8
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 0.0e+00 1771.1 1919 51.5
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 0.0e+00 1769.6 1913 52.4
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1760.7 1942 51.8
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 0.0e+00 1757.3 1939 51.8
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1756.1 1892 52.4
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 0.0e+00 1740.7 1943 51.6
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 0.0e+00 1738.8 1941 50.8
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1738.8 1941 51.3
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 0.0e+00 1735.7 1942 50.9
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 0.0e+00 1725.3 1936 50.6
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 0.0e+00 1724.5 1933 51.1
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 0.0e+00 1724.1 1931 51.1
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 0.0e+00 1716.8 1934 50.8
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 0.0e+00 1715.7 1932 50.8
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 0.0e+00 1715.3 1902 52.1
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1704.1 1913 50.9
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 0.0e+00 1689.1 1909 50.5
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1682.5 1907 50.9
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 0.0e+00 1672.9 1926 50.1
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 0.0e+00 1669.4 1949 49.8
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 0.0e+00 1665.6 1934 50.3
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1665.6 1926 50.8
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 0.0e+00 1658.3 1930 50.6
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 0.0e+00 1657.5 1934 50.1
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 0.0e+00 1654.8 1551 59.3
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1651.0 1585 56.7
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1649.4 1925 50.1
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 0.0e+00 1648.3 1926 50.1
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 0.0e+00 1643.2 1612 55.4
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 0.0e+00 1641.7 1935 49.4
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 0.0e+00 1635.9 1933 49.2
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 0.0e+00 1632.5 1938 49.7
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1631.7 1931 49.8
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1624.4 1629 56.0
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1622.1 1930 49.8
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1618.6 1938 49.4
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 0.0e+00 1614.0 1932 49.8
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 0.0e+00 1605.5 1960 48.8
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 1601.3 1984 48.3
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 0.0e+00 1561.6 1918 48.6
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1559.7 1916 48.6
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1554.3 1941 47.6
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 0.0e+00 1520.0 1748 51.3
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1470.3 1769 48.3
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 0.0e+00 1440.6 1913 45.0
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 0.0e+00 1374.8 1136 64.1
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 0.0e+00 1321.2 1929 42.1
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 0.0e+00 1239.9 1522 48.3
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 0.0e+00 1232.6 1528 47.5
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 0.0e+00 1231.1 1523 47.3
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 0.0e+00 1198.3 1421 48.8
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1119.0 1689 40.9
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 0.0e+00 1117.8 1106 55.7
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 0.0e+00 1110.9 1054 57.3
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 0.0e+00 1098.6 1381 48.0
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.7e-298 1029.2 1037 55.4
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 4.7e-293 1012.3 1432 43.5
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.3e-290 1004.2 992 55.4
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 1.8e-268 930.6 831 60.4
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 6.2e-261 905.6 802 62.1
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 2.2e-258 897.1 1998 32.8
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 3.9e-199 700.3 955 44.6
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 2.0e-195 688.0 767 54.2
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 2.3e-183 647.9 512 68.0
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 1.6e-155 555.4 1569 29.6
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 4.3e-153 547.4 386 73.6
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 1.2e-144 519.2 405 66.4
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 3.7e-141 507.7 405 65.7
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 1.6e-131 475.7 478 56.5
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 6.0e-131 473.8 431 62.4
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.3e-122 446.0 331 69.8
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 8.4e-117 426.8 391 58.8
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.0e-114 418.3 606 41.9
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 7.3e-113 413.7 312 69.6
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 8.4e-109 400.2 570 41.9
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 1.2e-107 396.4 582 40.4
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 2.9e-101 375.2 343 58.0
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 8.4e-101 373.6 534 41.9
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 7.4e-97 360.5 266 69.2
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 2.5e-89 335.5 502 40.0
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 3.7e-88 331.6 526 43.5
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 3.7e-88 331.6 383 49.6
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 5.7e-81 307.8 646 33.4
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 2.4e-79 302.4 307 56.7
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 4.7e-75 288.1 178 80.3
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 1.4e-74 286.6 214 65.4
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 3.7e-72 278.5 178 76.4
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 2.2e-69 269.2 430 40.5
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 3.6e-67 261.9 524 35.9
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 2.3e-66 259.2 403 40.0
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 1.7e-61 243.0 562 31.0
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 5.2e-58 231.5 178 62.9
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.3e-56 226.9 411 38.9
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 2.2e-56 226.1 429 34.7
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 2.4e-55 222.6 852 27.1
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 9.1e-55 220.7 428 34.8
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 2.0e-54 219.5 167 66.5
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 1.5e-49 203.4 437 33.0
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 6.3e-48 198.0 143 68.5
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 1.4e-47 196.8 108 86.1
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 7.0e-47 194.5 112 85.7
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 5.6e-44 184.9 734 26.2
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.2e-40 172.9 181 54.1
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 2.4e-39 169.5 349 36.1
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 7.0e-39 167.9 161 55.9
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 9.2e-39 167.5 149 53.7
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 2.7e-38 166.0 207 43.5
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 3.1e-34 152.5 168 51.8
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 2.9e-32 146.0 151 45.7
Cpa.g.sc98.30 Carica papaya HOM05D003893 ORTHO05D005167 4.1e-31 142.1 133 57.1
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 4.3e-28 132.1 154 51.9
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 5.6e-28 131.7 187 44.4
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 5.6e-28 131.7 133 56.4
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 2.1e-27 129.8 90 68.9
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 2.1e-27 129.8 90 70.0
Os10g0142900 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 4.0e-26 125.6 181 43.1
Gohir.D02G139050 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.3e-24 120.6 79 70.9
Gorai.005G158100 Gossypium raimondii HOM05D003893 ORTHO05D005167 1.7e-24 120.2 85 68.2
Gohir.D11G202680 Gossypium hirsutum HOM05D003893 ORTHO05D005167 6.4e-24 118.2 85 67.1
ATR0665G236 Amborella trichopoda HOM05D003893 ORTHO05D005167 9.2e-23 114.4 156 41.0
arahy.Tifrunner.gnm1.ann1.9S00H1 Arachis hypogaea HOM05D003893 ORTHO05D005167 5.1e-21 108.6 74 70.3
Gohir.A11G196650 Gossypium hirsutum HOM05D003893 ORTHO05D005167 7.3e-20 104.8 85 61.2
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 9.5e-20 104.4 55 90.9
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.2e-19 104.0 105 53.3
Ah.07g199150 Amaranthus hybridus HOM05D003893 ORTHO05D017260 4.7e-19 102.1 96 53.1
arahy.Tifrunner.gnm1.ann1.T8TVPL Arachis hypogaea HOM05D000826 ORTHO05D006448 1.9e-15 90.1 71 64.8
Gorai.002G189000 Gossypium raimondii HOM05D003893 ORTHO05D047700 1.6e-14 87.0 63 63.5
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.6e-14 87.0 211 28.4
CSS0024237 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 2.1e-14 86.7 140 41.4
arahy.Tifrunner.gnm1.ann1.QNR9EZ Arachis hypogaea HOM05D000826 ORTHO05D006448 3.5e-14 85.9 71 63.4
arahy.Tifrunner.gnm1.ann1.UB4SVV Arachis hypogaea HOM05D003893 ORTHO05D005167 7.8e-14 84.7 127 42.5
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 8.6e-13 81.3 183 32.2
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 2.5e-12 79.7 175 33.7
arahy.Tifrunner.gnm1.ann1.BV66IC Arachis hypogaea HOM05D000826 ORTHO05D006448 3.3e-12 79.3 50 76.0
arahy.Tifrunner.gnm1.ann1.V6RYFZ Arachis hypogaea HOM05D000826 ORTHO05D006448 3.3e-12 79.3 50 76.0
arahy.Tifrunner.gnm1.ann1.T26UD0 Arachis hypogaea HOM05D000826 ORTHO05D006448 9.6e-12 77.8 49 75.5
Gohir.D01G152650 Gossypium hirsutum HOM05D003893 ORTHO05D047700 2.1e-11 76.6 63 57.1
arahy.Tifrunner.gnm1.ann1.AZ80GT Arachis hypogaea HOM05D000826 ORTHO05D006448 4.7e-11 75.5 49 73.5
A01p25860 Brassica napus HOM05D003893 ORTHO05D017260 1.8e-10 73.6 81 51.9
BcaC09g49809 Brassica carinata HOM05D003893 ORTHO05D017260 3.1e-10 72.8 81 50.6
C01p32750 Brassica napus HOM05D003893 ORTHO05D017260 3.1e-10 72.8 81 50.6
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 1.2e-09 70.9 168 30.4
BolC4t23418H Brassica oleracea HOM05D003893 ORTHO05D021800 1.7e-08 67.0 171 31.6
TAR369G0820 Trochodendron aralioides HOM05D049058 ORTHO05D005167 1.7e-08 67.0 66 53.0
SEGI_26572 Sequoiadendron giganteum HOM05D003893 ORTHO05D011582 2.9e-08 66.2 193 30.1
BcaB04g18068 Brassica carinata HOM05D003893 ORTHO05D017260 4.9e-08 65.5 79 50.6
BolC1t03210H Brassica oleracea HOM05D003893 ORTHO05D017260 6.4e-08 65.1 75 49.3
TAR369G0648 Trochodendron aralioides HOM05D049058 ORTHO05D005167 6.4e-08 65.1 43 69.8
BolC6t38634H Brassica oleracea HOM05D003893 ORTHO05D021800 8.4e-08 64.7 161 31.7
BcaB07g32633 Brassica carinata HOM05D003893 ORTHO05D017260 1.4e-07 63.9 79 49.4


User provided reference genes

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