Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1857.4 929 100.0
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1564.3 989 79.8
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1563.9 935 83.0
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1552.0 989 79.5
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1551.6 989 79.5
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1545.8 985 79.6
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1542.7 998 78.8
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1542.3 989 79.0
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1541.2 989 78.4
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1536.9 989 78.1
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1533.5 986 78.6
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1530.4 989 78.1
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1529.6 990 78.6
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1529.2 989 78.8
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1528.8 988 77.7
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1520.8 989 77.9
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1518.4 990 77.8
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1517.3 989 77.4
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1516.9 997 77.9
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1515.7 989 77.1
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1515.7 989 77.2
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1515.4 997 77.5
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1514.2 989 77.2
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1513.0 985 78.0
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1512.3 989 77.7
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1512.3 989 77.4
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1511.9 995 77.1
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1511.9 989 77.2
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1509.2 990 76.9
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1506.9 990 78.1
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1506.1 1029 75.4
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1504.2 1013 75.3
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1503.8 989 77.0
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1502.3 989 76.7
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1501.9 1013 75.3
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1500.7 990 76.7
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1499.6 982 78.7
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1497.3 989 76.5
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1495.7 989 76.4
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1495.3 989 76.1
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1492.6 989 75.9
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1492.2 989 77.6
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1490.3 1013 74.7
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1490.3 987 76.5
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1488.8 984 77.0
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1488.4 992 76.4
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1479.9 1015 75.3
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1479.5 989 76.2
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1479.2 975 76.5
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1477.6 987 75.9
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1477.2 982 75.9
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1475.3 991 75.0
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1474.1 987 75.1
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1473.0 991 75.7
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1472.2 989 75.2
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1469.5 993 75.4
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1468.4 1005 74.5
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1464.1 1084 70.0
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1460.7 991 75.1
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1457.6 990 74.4
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1457.6 986 74.4
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1456.4 992 74.3
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1455.3 1081 70.9
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1453.7 990 74.5
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1451.8 991 74.2
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1451.0 990 74.0
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1451.0 986 73.8
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1450.3 992 74.2
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1446.0 983 75.1
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1442.6 991 73.5
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1442.6 1040 70.8
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1441.4 1004 72.9
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1441.0 990 73.5
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1439.1 1007 72.4
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1437.9 995 73.5
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1436.4 990 73.9
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1436.4 992 73.6
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1432.2 995 73.7
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1431.0 990 73.1
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1424.5 989 73.9
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1422.1 1007 71.8
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1422.1 1009 71.7
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1420.6 1017 71.6
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1414.1 932 76.8
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1404.0 937 75.7
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1375.5 995 69.6
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1374.0 1027 69.9
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1365.1 989 71.8
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1359.4 837 80.4
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1336.6 837 79.3
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1323.9 927 73.5
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1300.4 785 81.9
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1300.0 831 78.7
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1290.4 993 66.4
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1268.4 795 79.9
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1266.5 995 66.3
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1238.0 817 77.8
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1203.0 984 67.4
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1199.1 780 78.2
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1189.5 789 77.4
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1174.1 951 64.2
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1163.7 763 77.6
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1161.7 763 77.5
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1154.8 770 77.0
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1096.3 986 57.2
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1085.1 759 75.4
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1084.7 986 57.1
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1075.5 786 71.1
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.7e-281 972.2 613 79.3
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 5.7e-279 964.5 790 60.8
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 1.3e-278 963.4 978 50.2
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 7.2e-274 947.6 644 75.2
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 7.8e-252 874.4 664 68.5
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 3.3e-250 869.0 559 80.1
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 1.2e-247 860.5 605 69.9
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 7.1e-245 851.3 575 75.1
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 2.4e-232 809.7 519 77.3
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 4.5e-215 752.3 517 75.8
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 3.9e-187 659.4 418 76.6
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 3.0e-155 553.5 336 81.8
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 9.9e-122 442.2 337 69.1
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 1.7e-118 431.4 251 84.5
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 4.0e-115 420.2 227 90.3
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 9.0e-115 419.1 940 32.0
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 1.8e-102 378.3 267 74.5
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 1.1e-101 375.6 205 88.3
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 2.5e-101 374.4 991 28.6
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 7.6e-98 362.8 206 83.0
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 4.6e-95 353.6 206 82.0
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 1.0e-94 352.4 206 81.1
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 1.9e-88 331.6 1134 26.5
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 2.8e-84 317.8 178 83.7
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 4.5e-82 310.5 206 73.8
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 4.8e-68 263.8 153 80.4
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 6.5e-65 253.4 180 70.6
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 1.0e-62 246.1 441 36.1
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 1.0e-62 246.1 153 77.8
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 1.6e-58 232.3 127 83.5
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.4e-43 182.6 198 51.0
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.3e-41 175.3 211 46.9
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 6.6e-41 173.7 163 58.3
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 7.3e-40 170.2 174 58.0
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.5e-34 151.4 94 76.6
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.6e-31 141.4 87 81.6
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 2.2e-28 132.1 234 41.9
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 4.9e-28 131.0 127 60.6
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 1.1e-27 129.8 102 63.7
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.0e-25 123.2 81 69.1
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 5.0e-25 120.9 98 61.2
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 1.9e-24 119.0 74 79.7
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 1.2e-23 116.3 75 74.7
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.8e-23 115.2 108 60.2
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 6.2e-23 114.0 91 68.1
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.3e-22 112.1 80 78.8
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 1.1e-19 103.2 83 60.2
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 7.8e-18 97.1 88 53.4
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 5.6e-16 90.9 54 77.8
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 7.3e-16 90.5 52 78.8
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 1.2e-15 89.7 100 50.0
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.2e-15 89.7 98 44.9
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.1e-15 89.0 52 78.8
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.1e-15 89.0 52 78.8
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.2e-12 79.0 48 66.7
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 1.4e-11 76.3 180 31.7
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 2.1e-07 62.4 47 68.1
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 2.8e-07 62.0 51 60.8
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 8.1e-07 60.5 50 58.0


User provided reference genes

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