Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 3.5e-194 681.4 333 100.0
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 2.8e-167 592.0 329 91.5
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.4e-118 430.3 300 77.3
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 1.8e-118 429.9 297 76.4
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 3.4e-117 425.6 298 76.2
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.7e-116 423.3 298 75.2
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 5.5e-115 418.3 298 76.5
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 1.1e-112 410.6 297 72.7
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 5.7e-112 408.3 297 73.1
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 2.8e-111 406.0 302 70.9
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 4.8e-111 405.2 297 69.7
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 3.1e-110 402.5 292 70.9
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.6e-109 399.4 306 68.6
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 4.5e-109 398.7 299 70.2
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 7.7e-109 397.9 295 70.2
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 7.7e-109 397.9 297 70.4
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 1.3e-108 397.1 297 71.0
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 1.7e-108 396.7 298 71.8
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 2.9e-108 396.0 297 72.1
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 5.0e-108 395.2 312 69.6
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 8.5e-108 394.4 300 70.0
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 8.5e-108 394.4 299 70.9
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 1.1e-107 394.0 299 69.2
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 1.4e-107 393.7 291 71.1
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 4.2e-107 392.1 300 68.3
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 4.2e-107 392.1 304 71.1
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 4.2e-107 392.1 304 71.1
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 5.5e-107 391.7 297 69.7
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 7.2e-107 391.3 293 68.9
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 9.4e-107 391.0 299 69.6
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 2.7e-106 389.4 287 69.7
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 3.9e-105 385.6 292 69.9
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 2.6e-104 382.9 297 67.0
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 2.6e-104 382.9 301 67.8
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 2.6e-104 382.9 297 69.4
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 1.3e-103 380.6 299 68.9
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.7e-103 380.2 291 69.4
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 4.8e-103 378.6 297 66.7
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 8.2e-103 377.9 282 70.6
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 1.8e-102 376.7 293 67.9
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.8e-102 376.7 283 69.3
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 3.1e-102 375.9 306 65.7
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 3.1e-102 375.9 293 68.6
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 4.1e-102 375.6 301 66.8
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 7.0e-102 374.8 294 66.0
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 7.0e-102 374.8 303 66.0
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 9.1e-102 374.4 284 69.4
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 9.1e-102 374.4 298 69.1
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 1.5e-101 373.6 298 69.1
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 2.0e-101 373.2 301 64.8
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 2.6e-101 372.9 279 69.2
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 2.6e-101 372.9 298 69.1
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 3.5e-101 372.5 311 66.2
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 4.5e-101 372.1 298 67.4
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 4.5e-101 372.1 298 68.5
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 5.9e-101 371.7 293 66.2
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 5.9e-101 371.7 307 66.8
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 7.7e-101 371.3 301 64.8
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.0e-100 370.9 301 65.4
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 1.3e-100 370.5 298 66.8
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.3e-100 370.5 298 68.1
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 3.8e-100 369.0 284 68.7
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 3.8e-100 369.0 307 66.1
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 3.8e-100 369.0 294 66.0
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 5.0e-100 368.6 283 69.3
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 5.0e-100 368.6 300 66.0
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 8.5e-100 367.9 296 65.2
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 1.9e-99 366.7 288 67.0
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 1.9e-99 366.7 280 67.9
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 7.2e-99 364.8 280 68.9
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 1.0e-97 360.9 299 65.2
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.0e-97 360.9 292 64.7
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 1.4e-97 360.5 296 64.5
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.9e-97 359.0 296 65.2
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 4.4e-96 355.5 296 64.5
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 4.4e-96 355.5 280 67.5
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 7.4e-96 354.8 299 65.6
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 7.4e-96 354.8 296 66.2
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.3e-95 354.0 301 63.5
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 3.7e-95 352.4 300 63.3
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 4.8e-95 352.1 287 65.2
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 4.8e-95 352.1 299 64.2
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 6.3e-95 351.7 297 64.3
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 8.2e-95 351.3 298 63.4
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 2.4e-94 349.7 296 62.5
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 7.0e-94 348.2 296 65.9
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 9.1e-94 347.8 297 65.7
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 2.6e-93 346.3 293 64.2
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 3.5e-93 345.9 292 65.1
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 2.2e-92 343.2 297 61.3
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 5.0e-92 342.0 296 61.1
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 5.0e-92 342.0 259 68.0
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 6.5e-92 341.7 296 61.1
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.9e-91 340.1 221 80.1
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.9e-91 340.1 296 60.8
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.9e-91 340.1 287 61.7
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 4.2e-91 339.0 283 66.1
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 8.0e-90 334.7 285 63.5
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 1.0e-89 334.3 280 63.2
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 1.8e-89 333.6 274 65.7
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 2.3e-89 333.2 290 61.4
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 6.8e-89 331.6 293 62.1
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 2.6e-88 329.7 287 62.0
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 4.4e-88 328.9 300 60.3
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 1.1e-86 324.3 260 68.1
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 1.4e-86 323.9 242 69.4
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 2.7e-85 319.7 294 60.2
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 4.2e-83 312.4 283 61.1
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 4.7e-82 308.9 298 60.7
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 1.0e-81 307.8 293 57.7
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 4.0e-81 305.8 284 57.7
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 6.8e-81 305.1 299 59.5
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.2e-80 304.3 242 65.7
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 9.8e-80 301.2 297 59.3
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 8.3e-79 298.1 279 57.3
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 7.0e-78 295.0 233 67.4
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 7.7e-77 291.6 200 71.5
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.9e-76 289.7 237 67.5
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 5.0e-76 288.9 187 74.9
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 3.2e-70 269.6 307 54.1
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.1e-67 261.2 290 53.8
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 4.3e-67 259.2 233 59.7
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 4.3e-67 259.2 300 48.7
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 9.5e-67 258.1 270 53.7
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.4e-65 254.2 274 53.6
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 8.3e-63 245.0 218 62.8
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 8.3e-63 245.0 218 62.8
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.1e-62 244.6 221 61.5
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.4e-62 244.2 214 64.5
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.2e-61 241.1 222 59.5
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 2.3e-60 236.9 208 63.0
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.6e-58 230.7 225 57.3
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 4.4e-56 222.6 219 53.4
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 1.6e-53 214.2 193 63.7
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 3.0e-52 209.9 218 55.5
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.3e-51 206.5 120 76.7
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 9.5e-51 204.9 250 51.2
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 2.1e-50 203.8 140 72.9
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 5.2e-49 199.1 203 53.7
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 8.9e-49 198.4 151 62.9
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 2.0e-48 197.2 193 51.8
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 1.2e-45 188.0 246 48.4
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 3.0e-44 183.3 197 59.9
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 3.9e-44 183.0 151 63.6
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 1.4e-38 164.5 224 44.6
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 3.1e-33 146.7 118 55.1
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 2.0e-32 144.1 278 41.7
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 4.4e-32 142.9 231 36.8
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 3.8e-31 139.8 187 50.3
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 4.9e-31 139.4 178 47.2
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 4.9e-31 139.4 178 47.2
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 1.9e-30 137.5 192 44.8
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 4.2e-30 136.3 120 69.2
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 7.1e-30 135.6 84 76.2
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 1.2e-29 134.8 82 75.6
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 3.3e-27 126.7 128 60.2
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 5.6e-27 125.9 81 70.4
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 7.6e-24 115.5 125 57.6
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 1.3e-23 114.8 107 55.1
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 4.9e-23 112.8 124 48.4
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.6e-21 107.8 80 66.2
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 3.9e-20 103.2 127 43.3
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 7.4e-19 99.0 65 67.7
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 4.5e-16 89.7 80 56.2
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.9e-14 84.3 79 67.1
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 3.2e-14 83.6 176 38.1
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 2.5e-11 73.9 37 78.4
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 1.1e-09 68.6 64 51.6
Sc23g0002180 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.4e-09 68.2 96 46.9
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 1.8e-09 67.8 93 53.8
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 5.3e-09 66.2 35 71.4
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 1.2e-08 65.1 104 48.1
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 3.4e-08 63.5 110 37.3
Sabra17G0123400 Salix brachista HOM05D000390 ORTHO05D001192 7.6e-08 62.4 152 32.9
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 1.3e-07 61.6 79 43.0
Cc02_g39210 Coffea canephora HOM05D003601 ORTHO05D004896 2.2e-07 60.8 90 46.7
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 6.5e-07 59.3 39 56.4
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.4e-06 58.2 43 60.5
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.4e-06 58.2 43 60.5


User provided reference genes

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