Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 3.8e-304 1047.3 519 100.0
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 6.5e-280 966.8 519 90.4
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.2e-278 962.6 519 90.8
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 3.5e-278 961.1 518 91.3
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 4.6e-278 960.7 519 90.9
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.8e-277 958.7 519 91.1
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 5.1e-277 957.2 522 90.0
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 1.5e-276 955.7 520 90.2
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 1.9e-276 955.3 519 89.4
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.6e-275 952.2 521 89.1
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 3.7e-275 951.0 525 88.8
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 1.1e-274 949.5 521 89.3
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 1.1e-274 949.5 524 89.5
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 5.3e-274 947.2 526 88.6
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 5.3e-274 947.2 531 88.1
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 9.0e-274 946.4 509 90.4
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 1.5e-273 945.7 524 88.2
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 2.6e-273 944.9 514 90.3
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 1.7e-272 942.2 521 88.5
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 2.2e-272 941.8 519 88.8
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 3.8e-272 941.0 514 89.7
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 3.8e-272 941.0 522 88.5
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 3.8e-272 941.0 524 88.7
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 5.0e-272 940.6 521 88.3
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.1e-271 939.5 519 89.0
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.1e-271 939.5 524 88.7
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.1e-271 939.5 524 88.7
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 1.1e-271 939.5 514 89.5
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 1.1e-271 939.5 512 89.1
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.4e-271 939.1 522 88.3
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.9e-271 938.7 521 87.9
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.9e-271 938.7 525 87.8
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 2.5e-271 938.3 518 88.8
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 2.5e-271 938.3 525 87.6
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 2.5e-271 938.3 520 87.5
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 4.2e-271 937.6 554 84.3
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 4.2e-271 937.6 526 87.6
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 9.3e-271 936.4 521 88.1
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 9.3e-271 936.4 519 87.5
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 1.2e-270 936.0 515 89.9
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.6e-270 935.6 522 88.1
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 1.6e-270 935.6 498 91.4
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 4.6e-270 934.1 517 88.4
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 7.9e-270 933.3 521 87.5
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 1.3e-269 932.6 526 86.9
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 1.8e-269 932.2 520 86.9
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 3.9e-269 931.0 514 89.5
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 3.9e-269 931.0 527 86.7
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 3.9e-269 931.0 520 86.7
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 3.9e-269 931.0 520 86.7
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 1.1e-268 929.5 498 90.8
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.1e-268 929.5 526 86.9
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 1.5e-268 929.1 503 88.9
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 1.9e-268 928.7 518 86.9
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 7.4e-268 926.8 565 82.5
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.3e-267 926.0 522 85.8
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 1.1e-266 922.9 513 88.1
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 1.4e-266 922.5 528 86.0
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 1.8e-266 922.2 505 88.7
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 3.1e-266 921.4 524 85.9
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 9.0e-266 919.8 528 85.6
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 1.2e-265 919.5 519 86.3
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 2.0e-265 918.7 529 85.3
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 2.6e-265 918.3 528 85.8
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 4.5e-265 917.5 524 85.1
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 4.5e-265 917.5 524 85.1
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 7.7e-265 916.8 519 87.3
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.7e-264 915.6 524 85.1
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 2.2e-264 915.2 528 85.0
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 2.9e-264 914.8 526 85.4
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 3.8e-264 914.4 524 84.9
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 3.8e-264 914.4 515 87.8
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 5.0e-264 914.1 524 84.9
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 5.0e-264 914.1 523 86.0
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 6.5e-264 913.7 527 84.4
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 8.5e-264 913.3 528 84.8
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 8.5e-264 913.3 498 89.4
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.1e-263 912.9 519 85.4
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 1.1e-263 912.9 498 88.6
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.5e-263 911.8 523 85.7
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 4.2e-263 911.0 524 84.5
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 4.2e-263 911.0 524 84.5
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 4.2e-263 911.0 546 82.1
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 5.5e-263 910.6 525 84.8
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 9.4e-263 909.8 521 85.8
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 1.2e-262 909.4 528 84.3
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 2.7e-262 908.3 532 84.6
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 4.6e-262 907.5 523 85.5
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 1.0e-261 906.4 523 85.5
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 1.8e-261 905.6 521 84.1
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 8.8e-261 903.3 525 85.5
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 1.7e-259 899.0 530 83.2
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 3.7e-259 897.9 519 85.0
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 8.2e-259 896.7 522 84.7
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 1.5e-257 892.5 522 82.4
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 1.3e-256 889.4 522 83.5
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 1.4e-255 885.9 522 81.6
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 3.6e-254 881.3 511 82.8
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.4e-253 879.4 516 81.6
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 3.9e-253 877.9 522 81.4
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 6.7e-253 877.1 516 81.0
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 6.7e-253 877.1 520 82.5
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 6.7e-253 877.1 520 82.5
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 8.8e-253 876.7 507 83.0
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 2.5e-247 858.6 528 78.2
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 1.6e-246 855.9 520 81.9
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 3.3e-244 848.2 521 80.2
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 8.2e-243 843.6 564 75.2
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 3.8e-240 834.7 528 76.7
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 2.4e-234 815.5 523 75.5
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 2.1e-230 802.4 521 75.2
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 3.0e-229 798.5 473 85.2
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 5.7e-228 794.3 499 76.2
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.7e-227 792.7 506 73.9
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 4.2e-223 778.1 514 71.0
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 7.2e-223 777.3 514 71.6
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 4.0e-221 771.5 514 70.6
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 4.1e-218 761.5 519 69.4
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 2.1e-214 749.2 512 71.1
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.8e-213 746.1 524 73.5
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 9.8e-212 740.3 525 72.6
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.4e-210 736.5 419 85.4
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 7.8e-209 730.7 397 90.4
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 5.8e-204 714.5 491 68.2
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 5.8e-204 714.5 522 71.5
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 1.6e-198 696.4 379 90.8
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 5.4e-186 654.8 526 60.1
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 6.6e-184 647.9 504 63.5
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 1.6e-182 643.3 419 79.2
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 4.9e-179 631.7 344 90.4
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 4.2e-178 628.6 346 90.2
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 2.1e-161 573.2 522 58.0
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 3.2e-154 549.3 355 77.7
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 4.2e-154 548.9 491 54.4
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 1.5e-151 540.4 290 88.6
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 3.3e-151 539.3 287 88.2
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 2.0e-140 503.4 275 92.0
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.4e-136 490.7 356 71.6
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 1.4e-136 490.7 510 51.0
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 1.1e-127 461.1 502 48.8
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 1.2e-121 441.0 285 79.3
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 2.7e-100 370.2 192 91.7
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 6.8e-80 302.4 409 39.9
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 2.6e-63 247.3 325 45.5
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 3.4e-63 246.9 362 43.1
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.5e-45 187.6 120 73.3
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 1.0e-38 165.6 93 86.0
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 2.6e-31 141.0 79 81.0
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 7.9e-28 129.4 93 64.5
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 1.2e-23 115.5 92 59.8
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 6.5e-22 109.8 76 69.7
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 7.7e-15 86.3 72 59.7
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 1.9e-13 81.6 125 43.2
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 8.0e-12 76.3 48 68.8
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 1.1e-08 65.9 35 82.9


User provided reference genes

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