Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.1e-85 318.9 154 100.0
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.7e-82 309.3 152 98.0
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 2.2e-82 308.9 154 96.8
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 2.8e-82 308.5 153 95.4
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 2.5e-78 295.4 152 94.1
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 6.3e-74 280.8 146 94.5
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 1.3e-71 273.1 146 90.4
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 3.2e-57 225.3 147 68.7
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 3.2e-57 225.3 147 68.7
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 1.6e-56 223.0 147 72.8
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 5.9e-56 221.1 146 70.5
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 1.0e-55 220.3 148 69.6
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 1.3e-55 219.9 147 68.7
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 3.9e-55 218.4 147 68.7
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 6.6e-55 217.6 144 70.1
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 8.6e-55 217.2 144 68.1
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 4.7e-53 211.5 144 68.1
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 4.7e-53 211.5 144 68.1
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 6.1e-53 211.1 146 63.7
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 1.4e-52 209.9 144 64.6
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 1.4e-52 209.9 144 66.7
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 1.8e-52 209.5 150 64.7
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.8e-52 209.5 147 63.9
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 2.3e-52 209.1 147 63.3
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 2.3e-52 209.1 152 64.5
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 2.3e-52 209.1 144 65.3
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 3.1e-52 208.8 146 63.7
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 4.0e-52 208.4 146 65.1
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 6.8e-52 207.6 144 66.7
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.2e-51 206.8 151 60.9
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 1.2e-51 206.8 147 63.9
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 1.5e-51 206.5 150 63.3
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.5e-51 206.5 144 66.0
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 2.6e-51 205.7 152 61.8
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 2.6e-51 205.7 150 63.3
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 2.6e-51 205.7 150 63.3
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 3.4e-51 205.3 150 63.3
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 5.8e-51 204.5 145 64.1
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 7.5e-51 204.1 149 63.8
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 9.8e-51 203.8 150 63.3
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.7e-50 203.0 150 62.0
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.9e-50 202.2 149 61.1
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 4.9e-50 201.4 149 60.4
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 1.1e-49 200.3 147 63.9
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 4.1e-49 198.4 145 62.1
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 7.0e-49 197.6 143 63.6
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 7.0e-49 197.6 143 63.6
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 9.2e-49 197.2 144 66.0
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 1.6e-48 196.4 146 61.0
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 2.7e-48 195.7 149 60.4
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 4.6e-48 194.9 144 63.2
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 7.8e-48 194.1 149 57.7
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 7.8e-48 194.1 147 61.9
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 6.6e-47 191.0 144 59.7
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 4.3e-46 188.3 144 58.3
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 4.3e-46 188.3 144 57.6
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 7.3e-46 187.6 144 58.3
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 9.5e-46 187.2 144 58.3
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 9.5e-46 187.2 144 58.3
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 9.5e-46 187.2 146 57.5
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.2e-45 186.8 144 56.2
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 1.2e-45 186.8 150 56.0
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.6e-45 186.4 147 55.1
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.1e-45 186.0 144 56.9
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 2.8e-45 185.7 144 62.5
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 4.7e-45 184.9 146 59.6
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 6.2e-45 184.5 146 56.2
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 6.2e-45 184.5 149 55.0
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 8.1e-45 184.1 144 57.6
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 8.1e-45 184.1 147 59.2
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 1.1e-44 183.7 144 56.2
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 1.1e-44 183.7 144 56.2
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 5.2e-44 181.4 146 56.2
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 5.2e-44 181.4 146 56.2
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 1.5e-43 179.9 142 55.6
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 1.5e-43 179.9 147 58.5
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 2.6e-43 179.1 149 57.0
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 4.4e-43 178.3 118 68.6
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 2.2e-42 176.0 146 54.8
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 4.9e-42 174.9 126 61.9
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 4.1e-41 171.8 152 52.0
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 5.4e-41 171.4 144 53.5
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 1.2e-40 170.2 145 51.0
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.5e-40 168.7 146 51.4
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 3.9e-39 165.2 147 51.7
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 6.6e-39 164.5 145 51.7
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 1.9e-38 162.9 144 52.8
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.9e-38 162.9 149 49.7
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 2.5e-38 162.5 132 57.6
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 4.3e-38 161.8 144 52.8
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.6e-37 159.8 146 50.0
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 2.1e-37 159.5 149 48.3
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 1.4e-36 156.8 110 60.9
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 2.3e-36 156.0 146 47.3
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 2.3e-36 156.0 146 49.3
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 2.3e-36 156.0 146 47.9
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 3.1e-36 155.6 154 47.4
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 1.7e-34 149.8 148 46.6
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 4.9e-34 148.3 148 44.6
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 6.4e-34 147.9 148 45.9
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 5.4e-33 144.8 147 44.2
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.2e-32 143.7 147 47.6
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 2.1e-32 142.9 148 42.6
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 2.7e-32 142.5 148 43.9
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 3.5e-32 142.1 93 71.0
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 6.0e-32 141.4 145 44.1
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 6.0e-32 141.4 117 51.3
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 1.3e-31 140.2 146 44.5
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 1.7e-31 139.8 148 42.6
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 6.6e-31 137.9 154 53.2
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 8.6e-31 137.5 147 44.2
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.9e-30 136.3 146 45.9
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 4.3e-30 135.2 144 45.1
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 7.3e-30 134.4 93 62.4
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 9.6e-30 134.0 148 43.2
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 1.6e-29 133.3 152 42.8
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 6.2e-29 131.3 121 50.4
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 6.2e-29 131.3 152 41.4
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 8.1e-29 131.0 144 44.4
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 8.1e-29 131.0 144 45.1
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 1.1e-28 130.6 75 81.3
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 1.4e-28 130.2 154 44.2
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.8e-28 129.8 149 42.3
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 4.0e-28 128.6 147 40.8
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 6.8e-28 127.9 144 41.0
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 2.6e-27 125.9 143 37.8
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 3.4e-27 125.6 145 42.1
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.4e-27 125.6 145 42.1
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 2.2e-26 122.9 146 43.2
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 6.4e-26 121.3 135 44.4
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 2.4e-25 119.4 150 35.3
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 3.2e-25 119.0 148 39.9
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 3.2e-25 119.0 127 46.5
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 3.5e-24 115.5 147 33.3
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 4.6e-24 115.2 146 39.7
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 7.8e-24 114.4 147 42.2
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 7.8e-24 114.4 148 38.5
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.0e-23 114.0 145 38.6
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 3.9e-23 112.1 100 49.0
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 2.5e-22 109.4 144 36.8
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 9.6e-22 107.5 147 34.0
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 1.6e-21 106.7 109 45.9
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 2.1e-21 106.3 93 49.5
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 3.6e-21 105.5 147 36.1
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 1.5e-19 100.1 117 43.6
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 7.6e-19 97.8 94 43.6
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.4e-17 93.6 118 42.4
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 4.6e-16 88.6 143 30.8
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 3.0e-15 85.9 82 54.9
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 2.1e-13 79.7 128 34.4
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 3.1e-12 75.9 52 63.5
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 6.9e-12 74.7 74 54.1
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 1.3e-10 70.5 121 33.1
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 2.4e-09 66.2 65 52.3
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 1.0e-07 60.8 55 43.6
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.8e-07 60.1 34 70.6


User provided reference genes

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