Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A413G21 Lonicera japonica HOM05D006898 ORTHO05D008506 1.4e-243 845.9 432 100.0
Lj8C418G2 Lonicera japonica HOM05D006898 ORTHO05D008506 6.6e-161 571.2 295 96.9
Hma1.2p1_0214F.1_g090725 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 4.6e-154 548.5 424 68.2
vmacro05087 Vaccinium macrocarpon HOM05D006898 ORTHO05D008506 3.2e-147 525.8 451 63.2
Rhsim07G0174000 Rhododendron simsii HOM05D006898 ORTHO05D008506 1.3e-145 520.4 423 66.0
Actinidia03566 Actinidia chinensis HOM05D006898 ORTHO05D008506 2.6e-141 506.1 423 64.5
DCAR_004547 Daucus carota HOM05D006898 ORTHO05D008506 3.4e-141 505.8 418 63.4
QL12p024620 Quercus lobata HOM05D006898 ORTHO05D008506 1.6e-138 496.9 422 62.6
ECA246G1941 Erigeron canadensis HOM05D006898 ORTHO05D008506 9.5e-136 487.6 418 61.0
CiPaw.07G215200 Carya illinoinensis HOM05D006898 ORTHO05D008506 2.8e-135 486.1 424 62.0
Dinv09447 Davidia involucrata HOM05D006898 ORTHO05D008506 3.6e-135 485.7 395 67.6
HanXRQChr17g0538631 Helianthus annuus HOM05D006898 ORTHO05D008506 8.1e-135 484.6 430 60.5
Prupe.1G463000 Prunus persica HOM05D006898 ORTHO05D008506 1.1e-134 484.2 422 63.0
AUR62028029 Chenopodium quinoa HOM05D006898 ORTHO05D008506 6.8e-134 481.5 426 61.3
Haze_21680 Corylus avellana HOM05D006898 ORTHO05D008506 1.1e-131 474.2 450 58.7
EL10Ac2g03651 Beta vulgaris HOM05D006898 ORTHO05D008506 6.0e-130 468.4 423 60.0
RcHm_v2.0_Chr6g0312281 Rosa chinensis HOM05D006898 ORTHO05D008506 6.0e-130 468.4 423 61.2
Sc06g0001380 Simmondsia chinensis HOM05D006898 ORTHO05D008506 2.3e-129 466.5 426 60.3
FAN15G2927 Fragaria x ananassa HOM05D006898 ORTHO05D008506 3.9e-129 465.7 418 61.2
Hund19373 Selenicereus undatus HOM05D006898 ORTHO05D008506 3.9e-129 465.7 427 60.7
SGA_v2.0_scaffold27G11702 Striga asiatica HOM05D006898 ORTHO05D008506 8.7e-129 464.5 426 59.4
Ah.10g033620 Amaranthus hybridus HOM05D006898 ORTHO05D008506 2.5e-128 463.0 419 59.2
Potri.005G179700 Populus trichocarpa HOM05D006898 ORTHO05D008506 2.5e-128 463.0 421 60.8
FAN24G1534 Fragaria x ananassa HOM05D006898 ORTHO05D008506 3.3e-128 462.6 420 60.0
PGSC0003DMG400003978 Solanum tuberosum HOM05D006898 ORTHO05D008506 5.6e-128 461.8 426 61.0
FvH4_2g30630 Fragaria vesca HOM05D006898 ORTHO05D008506 7.3e-128 461.5 420 60.0
Migut.A00518 Erythranthe guttata HOM05D006898 ORTHO05D008506 6.2e-127 458.4 428 59.1
Peaxi162Scf00025g02821 Petunia axillaris HOM05D006898 ORTHO05D008506 1.4e-126 457.2 427 60.0
Atru.chr7.2715 Acer truncatum HOM05D006898 ORTHO05D008506 2.4e-126 456.4 398 61.6
GSVIVG01035599001 Vitis vinifera HOM05D006898 ORTHO05D008506 2.4e-126 456.4 407 61.4
CAN.G476.10 Capsicum annuum HOM05D006898 ORTHO05D008506 3.1e-126 456.1 426 59.4
PGR142G0710 Punica granatum HOM05D006898 ORTHO05D008506 3.1e-126 456.1 423 59.6
Nitab4.5_0001582g0070 Nicotiana tabacum HOM05D006898 ORTHO05D008506 4.4e-125 452.2 427 59.0
Sopen11g001550 Solanum pennellii HOM05D006898 ORTHO05D008506 5.8e-125 451.8 426 59.2
Nitab4.5_0002138g0020 Nicotiana tabacum HOM05D006898 ORTHO05D008506 9.9e-125 451.1 423 59.1
Sed0005742 Sechium edule HOM05D006898 ORTHO05D008506 1.7e-124 450.3 417 59.2
Solyc11g005580.1 Solanum lycopersicum HOM05D006898 ORTHO05D008506 1.7e-124 450.3 426 58.7
Lalb_Chr22g0361311 Lupinus albus HOM05D006898 ORTHO05D008506 6.4e-124 448.4 425 58.6
Lsat_1_v5_gn_3_25521 Lactuca sativa HOM05D006898 ORTHO05D008506 4.2e-123 445.7 387 62.3
CDE06G0577 Ceratophyllum demersum HOM05D006898 ORTHO05D008506 5.4e-123 445.3 429 55.7
CsaV3_3G046900 Cucumis sativus L. HOM05D006898 ORTHO05D008506 5.4e-123 445.3 420 59.3
MELO3C003647.2 Cucumis melo HOM05D006898 ORTHO05D008506 2.7e-122 443.0 420 58.8
Ca_12885_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 4.6e-122 442.2 422 57.1
VMungo0647G2166 Vigna mungo HOM05D006898 ORTHO05D008506 4.6e-122 442.2 425 57.4
Sabra05G0135900 Salix brachista HOM05D006898 ORTHO05D008506 6.0e-122 441.8 414 58.9
ClCG05G017390 Citrullus lanatus HOM05D006898 ORTHO05D008506 1.3e-121 440.7 422 59.0
SalBow4G3225 Salvia bowleyana HOM05D006898 ORTHO05D008506 2.3e-121 439.9 429 59.2
AUR62020696 Chenopodium quinoa HOM05D006898 ORTHO05D008506 3.0e-121 439.5 434 56.7
COL.COLO4_18635 Corchorus olitorius HOM05D006898 ORTHO05D008506 3.9e-121 439.1 418 59.3
PSO170G2692 Papaver somniferum HOM05D006898 ORTHO05D008506 6.6e-121 438.3 433 58.9
Psat6g031720 Pisum sativum HOM05D006898 ORTHO05D008506 6.6e-121 438.3 423 56.7
unitig_748.g8163 Utricularia gibba HOM05D006898 ORTHO05D008506 1.1e-120 437.6 425 56.7
Glyma.14G132300 Glycine max HOM05D006898 ORTHO05D008506 4.3e-120 435.6 425 56.7
Oeu007490.1 Olea europaea HOM05D006898 ORTHO05D008506 4.3e-120 435.6 392 61.0
MD15G1110800 Malus domestica HOM05D006898 ORTHO05D008506 7.3e-120 434.9 393 61.1
Phvul.001G057500 Phaseolus vulgaris HOM05D006898 ORTHO05D008506 7.3e-120 434.9 424 56.8
PSO017G3342 Papaver somniferum HOM05D006898 ORTHO05D008506 1.3e-119 434.1 433 58.0
Aqoxy7G02535 Aquilegia oxysepala HOM05D006898 ORTHO05D008506 1.6e-119 433.7 397 59.2
Ciclev10008259m.g Citrus clementina HOM05D006898 ORTHO05D008506 1.6e-119 433.7 408 57.8
arahy.Tifrunner.gnm1.ann1.TJ47BC Arachis hypogaea HOM05D006898 ORTHO05D008506 4.8e-119 432.2 408 57.1
arahy.Tifrunner.gnm1.ann1.UC5PKR Arachis hypogaea HOM05D006898 ORTHO05D008506 1.8e-118 430.3 408 56.9
Glyma.11G174910 Glycine max HOM05D006898 ORTHO05D008506 1.8e-118 430.3 426 56.6
Medtr1g010070 Medicago truncatula HOM05D006898 ORTHO05D008506 6.9e-118 428.3 423 55.8
Gohir.D07G001300 Gossypium hirsutum HOM05D006898 ORTHO05D008506 3.4e-117 426.0 431 56.4
CANSAT21G1714 Cannabis sativa HOM05D006898 ORTHO05D008506 9.9e-117 424.5 319 69.9
ATR0626G384 Amborella trichopoda HOM05D006898 ORTHO05D008506 1.7e-116 423.7 430 54.2
Eucgr.C02146 Eucalyptus grandis HOM05D006898 ORTHO05D008506 1.7e-116 423.7 382 58.9
Thhalv10013596m.g Eutrema salsugineum HOM05D006898 ORTHO05D008506 2.9e-116 422.9 421 56.1
Gorai.001G001000 Gossypium raimondii HOM05D006898 ORTHO05D008506 2.9e-116 422.9 431 56.1
Duzib168G1571 Durio zibethinus HOM05D006898 ORTHO05D008506 4.9e-116 422.2 432 56.0
Sp6g32580 Schrenkiella parvula HOM05D006898 ORTHO05D008506 6.4e-116 421.8 421 55.6
CARHR202380 Cardamine hirsuta HOM05D006898 ORTHO05D008506 1.1e-115 421.0 423 54.8
TPR.G12020 Trifolium pratense HOM05D006898 ORTHO05D008506 1.4e-115 420.6 424 55.7
C09p65920 Brassica napus HOM05D006898 ORTHO05D008506 5.4e-115 418.7 421 56.3
BcaC04g19278 Brassica carinata HOM05D006898 ORTHO05D008506 7.1e-115 418.3 398 57.5
Carub.0006s0940 Capsella rubella HOM05D006898 ORTHO05D008506 7.1e-115 418.3 428 55.6
Gohir.A07G000900 Gossypium hirsutum HOM05D006898 ORTHO05D008506 7.1e-115 418.3 399 57.6
AL6G21470 Arabidopsis lyrata HOM05D006898 ORTHO05D008506 9.3e-115 417.9 421 54.9
AT5G10910 Arabidopsis thaliana HOM05D006898 ORTHO05D008506 1.6e-114 417.2 421 54.9
BolC9t59415H Brassica oleracea HOM05D006898 ORTHO05D008506 1.6e-114 417.2 398 58.3
A10p26780 Brassica napus HOM05D006898 ORTHO05D008506 2.1e-114 416.8 431 55.0
Lj5g0012927 Lotus japonicus HOM05D006898 ORTHO05D008506 3.5e-114 416.0 421 55.3
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 5.1e-113 412.1 417 55.6
THA.LOC104824957 Tarenaya hassleriana HOM05D006898 ORTHO05D008506 5.1e-113 412.1 417 54.7
FAN20G2020 Fragaria x ananassa HOM05D006898 ORTHO05D008506 3.3e-112 409.5 392 58.9
HPP92_018581 Vanilla planifolia HOM05D006898 ORTHO05D008506 1.3e-111 407.5 417 53.5
Thecc.09G001800 Theobroma cacao HOM05D006898 ORTHO05D008506 8.1e-111 404.8 399 57.1
Manes.02G165600 Manihot esculenta HOM05D006898 ORTHO05D008506 1.8e-110 403.7 423 56.0
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 4.0e-110 402.5 391 55.8
Os02g0137600 Oryza sativa ssp. japonica HOM05D006898 ORTHO05D008506 4.0e-110 402.5 439 54.0
TWI31G0903 Tripterygium wilfordii HOM05D006898 ORTHO05D008506 1.2e-109 401.0 417 54.7
HPP92_018578 Vanilla planifolia HOM05D006898 ORTHO05D008506 1.1e-104 384.4 390 53.8
CSS0039012 Camellia sinensis var. sinensis HOM05D006898 ORTHO05D008506 2.2e-100 370.2 425 51.3
Nn5g26940 Nelumbo nucifera HOM05D006898 ORTHO05D008506 9.0e-94 348.2 430 49.3
MD08G1133300 Malus domestica HOM05D006898 ORTHO05D008506 2.7e-90 336.7 245 71.4
Mapoly0071s0027 Marchantia polymorpha HOM05D006898 ORTHO05D008506 1.2e-85 321.2 439 43.3
Glyma.17G200800 Glycine max HOM05D006898 ORTHO05D008506 4.5e-85 319.3 246 65.9
TAR383G0625 Trochodendron aralioides HOM05D006898 ORTHO05D008506 5.9e-85 318.9 250 70.0
Pp3c15_22340 Physcomitrium patens HOM05D006898 ORTHO05D008506 8.8e-81 305.1 410 44.9
FAN20G0784 Fragaria x ananassa HOM05D006898 ORTHO05D008506 8.2e-79 298.5 217 72.8
Cpa.g.sc117.17 Carica papaya HOM05D006898 ORTHO05D008506 1.5e-72 277.7 214 69.6
Cc03_g11200 Coffea canephora HOM05D006898 ORTHO05D008506 2.0e-72 277.3 206 69.9
Cre13.g568150 Chlamydomonas reinhardtii HOM05D006898 ORTHO05D008506 1.1e-59 235.0 396 38.9
SMO119G0345 Selaginella moellendorffii HOM05D006898 ORTHO05D008506 9.4e-59 231.9 427 37.0
MCO14G201 Micromonas commoda HOM05D006898 ORTHO05D008506 1.8e-54 217.6 396 34.6
PRCOL_00004989 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 2.9e-52 210.3 398 35.9
AagrBONN_evm.TU.Sc2ySwM_362.1618 Anthoceros agrestis HOM05D006898 ORTHO05D008506 1.5e-51 208.0 268 44.0
Cc03_g11180 Coffea canephora HOM05D006898 ORTHO05D008506 4.1e-46 189.9 220 50.5
QL07p037905 Quercus lobata HOM05D006898 ORTHO05D008506 3.7e-31 140.2 76 89.5
Hma1.2p1_2279F.1_g318700 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 2.1e-29 134.4 100 66.0
Zm00001eb231840 Zea mays HOM05D006898 ORTHO05D008506 2.5e-27 127.5 230 38.3
Ca_29432_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 6.8e-25 119.4 169 40.8
Cc00_g34780 Coffea canephora HOM05D006898 ORTHO05D008506 3.4e-24 117.1 102 59.8
AagrBONN_evm.TU.Sc2ySwM_228.2079 Anthoceros agrestis HOM05D006898 ORTHO05D008506 3.6e-18 97.1 101 51.5
CBR_g40185 Chara braunii HOM05D000019 ORTHO05D001702 1.4e-17 95.1 144 43.8
VMungo1309G1975 Vigna mungo HOM05D006898 ORTHO05D008506 4.4e-16 90.1 121 44.6
Actinidia29335 Actinidia chinensis HOM05D006898 ORTHO05D008506 7.8e-13 79.3 173 34.1
MCO07G214 Micromonas commoda HOM05D006898 ORTHO05D008506 1.6e-10 71.6 160 30.6
PRCOL_00003584 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 9.0e-09 65.9 246 29.3
HanXRQChr08g0214621 Helianthus annuus HOM05D006898 ORTHO05D008506 3.2e-06 57.4 36 69.4


User provided reference genes

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