Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 2.7e-55 218.4 108 100.0
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 1.7e-28 129.4 99 70.7
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 1.4e-27 126.3 98 69.4
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 5.9e-26 120.9 99 64.6
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 1.0e-25 120.2 94 68.1
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 1.3e-25 119.8 91 71.4
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 3.8e-25 118.2 94 68.1
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 1.9e-24 115.9 94 67.0
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 2.5e-24 115.5 97 62.9
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 4.2e-24 114.8 91 68.1
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 1.3e-20 103.2 92 59.8
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 1.1e-19 100.1 98 59.2
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 1.2e-18 96.7 98 57.1
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 4.5e-18 94.7 103 54.4
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 4.5e-18 94.7 93 58.1
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 4.5e-18 94.7 94 58.5
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 7.7e-18 94.0 98 56.1
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 1.7e-17 92.8 98 54.1
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 3.2e-16 88.6 96 55.2
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 7.2e-16 87.4 93 54.8
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 3.6e-15 85.1 45 91.1
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 3.6e-15 85.1 71 66.2
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 8.0e-15 84.0 45 88.9
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 1.0e-14 83.6 45 88.9
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 1.0e-14 83.6 45 88.9
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 1.0e-14 83.6 45 88.9
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 1.0e-14 83.6 45 88.9
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 1.4e-14 83.2 45 86.7
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 1.4e-14 83.2 45 86.7
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 1.4e-14 83.2 45 86.7
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 1.4e-14 83.2 45 86.7
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 3.0e-14 82.0 45 84.4
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 3.0e-14 82.0 45 84.4
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 3.0e-14 82.0 45 86.7
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 3.0e-14 82.0 45 86.7
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 3.9e-14 81.6 45 86.7
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 3.9e-14 81.6 45 86.7
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 5.2e-14 81.3 45 86.7
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 5.2e-14 81.3 45 86.7
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 5.2e-14 81.3 45 86.7
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 5.2e-14 81.3 45 86.7
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 5.2e-14 81.3 45 86.7
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 5.2e-14 81.3 45 86.7
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 5.2e-14 81.3 45 86.7
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 5.2e-14 81.3 45 86.7
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 6.7e-14 80.9 45 84.4
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 6.7e-14 80.9 97 49.5
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 6.7e-14 80.9 45 84.4
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 8.8e-14 80.5 45 84.4
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 1.1e-13 80.1 45 84.4
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 1.1e-13 80.1 45 84.4
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 1.1e-13 80.1 45 84.4
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 1.1e-13 80.1 93 50.5
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 1.1e-13 80.1 45 84.4
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 1.5e-13 79.7 45 84.4
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 1.5e-13 79.7 45 84.4
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 1.5e-13 79.7 45 84.4
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 2.0e-13 79.3 45 84.4
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 2.0e-13 79.3 43 86.0
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 2.6e-13 79.0 43 86.0
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 2.6e-13 79.0 45 82.2
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 2.6e-13 79.0 44 86.4
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 3.3e-13 78.6 45 82.2
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 3.3e-13 78.6 45 82.2
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 3.3e-13 78.6 45 84.4
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 4.4e-13 78.2 45 82.2
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 4.4e-13 78.2 45 80.0
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 4.4e-13 78.2 45 82.2
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 4.4e-13 78.2 45 82.2
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 4.4e-13 78.2 45 82.2
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 4.4e-13 78.2 45 82.2
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 4.4e-13 78.2 45 82.2
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 4.4e-13 78.2 45 82.2
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 4.4e-13 78.2 45 80.0
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 5.7e-13 77.8 43 86.0
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 5.7e-13 77.8 44 84.1
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 5.7e-13 77.8 45 82.2
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 7.4e-13 77.4 43 81.4
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 7.4e-13 77.4 45 80.0
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 9.7e-13 77.0 45 82.2
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 9.7e-13 77.0 45 80.0
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 1.3e-12 76.6 45 77.8
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 1.3e-12 76.6 45 77.8
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 1.3e-12 76.6 43 86.0
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 2.8e-12 75.5 43 81.4
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 3.7e-12 75.1 43 81.4
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 8.2e-12 73.9 43 79.1
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 8.2e-12 73.9 43 79.1
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 8.2e-12 73.9 43 79.1
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 8.2e-12 73.9 43 79.1
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 8.2e-12 73.9 43 79.1
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 8.2e-12 73.9 43 79.1
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 8.2e-12 73.9 73 56.2
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 1.1e-11 73.6 43 76.7
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 2.4e-11 72.4 43 74.4
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 3.1e-11 72.0 43 72.1
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 3.1e-11 72.0 43 76.7
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 4.1e-11 71.6 90 50.0
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 5.3e-11 71.2 97 44.3
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.7e-09 66.2 32 100.0
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 2.5e-08 62.4 95 40.0
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 3.2e-08 62.0 32 90.6
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 3.6e-07 58.5 31 87.1
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 4.7e-07 58.2 29 96.6


User provided reference genes

Program Settings