Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 0.0e+00 2053.5 1320 100.0
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 2.9e-50 205.3 587 34.6
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 9.3e-49 200.3 604 35.1
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 3.9e-47 194.9 602 32.9
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 5.5e-41 174.5 318 43.1
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 7.1e-41 174.1 344 41.0
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 9.3e-41 173.7 334 39.8
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 6.0e-40 171.0 339 38.6
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 5.1e-39 167.9 325 39.1
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 7.4e-38 164.1 330 39.7
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.3e-37 163.3 632 32.0
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 1.6e-37 162.9 317 39.7
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 1.8e-36 159.5 341 39.6
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 1.2e-35 156.8 306 41.2
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 1.2e-35 156.8 312 39.1
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 1.5e-35 156.4 308 38.6
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.0e-35 156.0 321 37.1
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.0e-35 156.0 338 36.1
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 4.5e-35 154.8 339 35.7
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.7e-34 152.9 338 39.1
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 1.7e-34 152.9 320 40.3
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 2.2e-34 152.5 328 39.0
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 5.0e-34 151.4 624 31.4
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 5.0e-34 151.4 386 36.3
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.1e-33 150.2 338 38.8
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 9.3e-33 147.1 353 37.4
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 2.1e-32 146.0 286 40.6
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 3.9e-31 141.7 671 32.6
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 3.9e-31 141.7 321 37.4
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 8.7e-31 140.6 664 32.1
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 7.4e-30 137.5 291 36.4
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.4e-30 137.5 617 27.7
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.7e-29 136.3 329 34.3
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 2.2e-29 136.0 1104 25.9
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.1e-28 133.7 329 34.3
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.8e-28 132.9 326 34.0
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 3.1e-28 132.1 341 36.1
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 4.1e-28 131.7 281 38.4
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 2.0e-27 129.4 631 32.3
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 4.5e-27 128.3 334 34.1
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.3e-26 126.7 316 38.6
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.1e-25 123.6 304 35.9
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 3.2e-25 122.1 339 33.9
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 3.2e-25 122.1 305 35.7
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 4.2e-25 121.7 361 32.7
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 3.0e-23 115.5 416 32.0
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 3.0e-23 115.5 376 30.3
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 5.7e-22 111.3 679 27.0
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 9.7e-22 110.5 298 33.9
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 2.8e-21 109.0 325 33.5
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 2.8e-21 109.0 312 33.7
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 4.8e-21 108.2 224 40.2
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.8e-20 106.3 299 32.8
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.1e-20 105.5 280 32.1
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 6.9e-20 104.4 273 32.6
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 1.2e-19 103.6 365 32.6
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.5e-19 103.2 616 27.3
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 2.0e-19 102.8 178 41.6
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 2.0e-19 102.8 168 42.9
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 2.6e-19 102.4 156 45.5
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 4.5e-19 101.7 376 31.1
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.9e-19 101.3 308 32.5
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 5.9e-19 101.3 295 35.3
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 1.3e-18 100.1 329 33.4
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.2e-18 99.4 350 29.4
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 2.2e-18 99.4 324 32.1
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 1.4e-17 96.7 388 29.6
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.9e-17 96.3 332 32.8
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.5e-17 95.9 332 31.0
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 2.5e-17 95.9 307 32.9
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 3.2e-17 95.5 355 29.6
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 3.2e-17 95.5 352 30.7
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 5.5e-17 94.7 416 28.6
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 2.1e-16 92.8 610 26.7
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 3.6e-16 92.0 153 43.1
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 8.0e-16 90.9 352 30.1
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 8.0e-16 90.9 648 23.9
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 3.0e-15 89.0 300 30.3
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 5.2e-15 88.2 333 31.8
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 5.2e-15 88.2 333 31.8
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 5.2e-15 88.2 302 32.1
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 6.7e-15 87.8 367 31.1
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 1.1e-14 87.0 344 32.0
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.0e-14 86.3 276 33.3
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.0e-14 86.3 183 37.7
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 2.6e-14 85.9 151 43.0
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 5.7e-14 84.7 293 33.1
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 7.4e-14 84.3 269 34.9
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 9.7e-14 84.0 288 30.6
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 1.7e-13 83.2 292 32.2
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 2.2e-13 82.8 320 28.8
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.8e-13 82.4 354 28.8
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 2.8e-13 82.4 403 29.0
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 3.7e-13 82.0 184 37.5
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 3.7e-13 82.0 300 30.0
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.1e-12 80.5 317 29.3
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.8e-12 79.7 156 39.1
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 1.8e-12 79.7 305 31.8
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 1.8e-12 79.7 290 34.5
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 3.1e-12 79.0 187 36.9
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 3.1e-12 79.0 294 31.3
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 3.1e-12 79.0 596 26.0
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 7.0e-12 77.8 147 38.8
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 2.6e-11 75.9 321 28.3
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 4.5e-11 75.1 309 30.1
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.2e-10 72.8 330 28.5
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 2.2e-10 72.8 292 27.1
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 2.9e-10 72.4 185 37.3
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 3.8e-10 72.0 352 28.1
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 3.8e-10 72.0 321 27.4
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 3.8e-10 72.0 264 32.2
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 6.5e-10 71.2 293 30.4
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 1.5e-09 70.1 327 30.3
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 1.9e-09 69.7 290 31.4
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 4.2e-09 68.6 364 27.2
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 5.5e-09 68.2 345 30.1
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 5.5e-09 68.2 316 29.7
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 7.2e-09 67.8 198 34.3
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 1.6e-08 66.6 234 29.5
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 1.6e-08 66.6 234 29.5
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 3.6e-08 65.5 291 28.2
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 4.7e-08 65.1 137 35.8
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 6.1e-08 64.7 356 27.5
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.7e-07 61.2 87 48.3
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 1.2e-06 60.5 239 29.3
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 2.0e-06 59.7 346 26.0


User provided reference genes

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